View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5740_low_25 (Length: 238)
Name: NF5740_low_25
Description: NF5740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5740_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 29900339 - 29900562
Alignment:
| Q |
1 |
tttattgttttatgtggttgtccaaatagaaaatgcatcaattcaaaaggcataaaaggactgcagagagctgatgcatcaactcggggttgccactgtt |
100 |
Q |
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| T |
29900339 |
tttattgttttatgtggttgtccaaatagaaaatgcatcaattcaaaaggcataaaaagactgcagagagctgatgcatcaactcggggatgccactgtt |
29900438 |
T |
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| Q |
101 |
actcatatcagaaggaaactgaactctgatgtcacaacgttgtggactagagttgtcgtttctacnnnnnnnnntatattcaagaactctctctatccaa |
200 |
Q |
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| T |
29900439 |
actcatatcagaaggaaactgaactctgatgtcacaaccttgtggacttgagttgtcgtttctacaaaaaaaaaaatattcaagaactctctctatccaa |
29900538 |
T |
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| Q |
201 |
gtgcactttttctgtatttaattt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
29900539 |
gtgcactttttctgtatttaattt |
29900562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 29886115 - 29886281
Alignment:
| Q |
1 |
tttattgttttatgtggttgtccaaatagaaaat-gcatcaattcaaaaggcataaaaggactgcagagagctgatgcatcaactcggggt-tgccactg |
98 |
Q |
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| T |
29886115 |
tttatggttttaggttattgtccaaattgaaaattgcatcaattccaaaggcataaaaggactgcagagagctgatacatcaaccgggggggtgcccctg |
29886214 |
T |
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| Q |
99 |
ttactcatatcagaaggaaactgaactctgatgtcacaacgttgtggactagagttgtcgtttctac |
165 |
Q |
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| T |
29886215 |
ttactcatatcagaaggaagctaaactatgatctcacaaccttgtggacttgagttgtcatttctac |
29886281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 29886307 - 29886356
Alignment:
| Q |
175 |
tatattcaagaactctctctatccaagtgcactttttctgtatttaattt |
224 |
Q |
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| T |
29886307 |
tatattcaagaactctctctatccaagtgcactttttctgtatttaattt |
29886356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 165
Target Start/End: Complemental strand, 4366018 - 4365938
Alignment:
| Q |
86 |
ggggttgccactgttactcatatcagaaggaaactgaactctgatgt-cacaacgttgtggactagagttgtcgtttctac |
165 |
Q |
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|||| ||||||| | |||||||| |||||||| |||||||||||||| |||||| ||||||||| ||||| || ||||||| |
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| T |
4366018 |
ggggatgccactatcactcatataagaaggaatctgaactctgatgtacacaaccttgtggacttgagttttcatttctac |
4365938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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