View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5740_low_26 (Length: 234)
Name: NF5740_low_26
Description: NF5740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5740_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 38260974 - 38260748
Alignment:
| Q |
1 |
gctgtggattcttccatcattaatattttcatttctcttcttcttctttctcatatcgttcttgttaacatccccaacatcagcaactgaaatattaatt |
100 |
Q |
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| T |
38260974 |
gctgtggattcttccatcattaatattttcatttctcttcttcttctttctcatatcgttcttgttaacatccc-aacatcagcaactgaaatattaatt |
38260876 |
T |
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| Q |
101 |
gtttgagaaggcagttcttgtgattgtgatgataagcctacatggagatcaagatgagaagaagcagcaacataagtattcattgtcatcatcatgttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38260875 |
gtttgagaaggcagttcttgtgattgtgatgataagcctacatggagatcaagatgagaagaagcagcaacataagtattcattgtcatcatcatgttgt |
38260776 |
T |
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| Q |
201 |
tgttcttgttgttattgatgatgatgtc |
228 |
Q |
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| T |
38260775 |
tattcttgttgttattgatgatgatgtc |
38260748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 38244674 - 38244467
Alignment:
| Q |
1 |
gctgtggattcttccatcattaatattttcatttctcttcttcttctttctcatatcgttcttgttaacatccccaacatcagcaactgaaatattaatt |
100 |
Q |
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|||||| ||| | ||||||| ||||||||||| |||||||||||||| || |||| |||||||||| ||||| |||||||| ||| | | ||| || |
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| T |
38244674 |
gctgtgaattttaccatcatcgatattttcattgctcttcttcttcttccttttatcattcttgttaatatccctaacatcagtaacaaataaattgata |
38244575 |
T |
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| Q |
101 |
gtttgagaaggcagttcttgtgattgtgatgataagcctacatggagatcaagatgagaagaagcagcaacataagtattcattgtcatcatcatgttgt |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| || | ||||||||||| |||||||| |||||| |
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| T |
38244574 |
gtttgagaaggcagttcttgtagttgtgatgataagcctacatgaagatcaagatgagaagaagtag---tagaagtattcattttcatcatcttgttgt |
38244478 |
T |
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| Q |
201 |
tgttcttgttg |
211 |
Q |
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|||| |||||| |
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| T |
38244477 |
tgttgttgttg |
38244467 |
T |
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