View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5740_low_27 (Length: 228)
Name: NF5740_low_27
Description: NF5740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5740_low_27 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 100 - 228
Target Start/End: Original strand, 5980174 - 5980302
Alignment:
| Q |
100 |
catccatatctcaaagcacaaagaagatcataaaaatgtgtgaatatacaatttaagtggcgattttgataagactgactataagcattacaagttgaat |
199 |
Q |
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| T |
5980174 |
catccatatctcaaagcacaaagaagatcataaaaatgtgtgattatacaatttaagtggcgattttgataagactgactataagcattacaagttgaat |
5980273 |
T |
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| Q |
200 |
taaactgtaattgatttttcttatcctca |
228 |
Q |
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|||| |||||||||||||||||||||||| |
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| T |
5980274 |
taaattgtaattgatttttcttatcctca |
5980302 |
T |
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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 5980075 - 5980103
Alignment:
| Q |
1 |
aaaggtacttcaactatttcaataaaaac |
29 |
Q |
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| T |
5980075 |
aaaggtacttcaactatttcaataaaaac |
5980103 |
T |
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