View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5740_low_3 (Length: 563)
Name: NF5740_low_3
Description: NF5740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5740_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 157 - 542
Target Start/End: Original strand, 29172033 - 29172419
Alignment:
| Q |
157 |
catctattttgtttgattttttatatttgaaactggagtagtatttcacgattgatgtccttaattggatag-accagtaatgtacatattaatgctaaa |
255 |
Q |
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| T |
29172033 |
catctattttgtttgattttttatatttgaaactggagtagtatttcacgattgatgtccttaattggataggaccagtaatgtacatattaatgctaaa |
29172132 |
T |
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| Q |
256 |
attgtaaatatatgtatatatcttgcattattagtggtataattgttttgattaaagcattgcacaaatcagattaagatgttaaccataggtattcctc |
355 |
Q |
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| T |
29172133 |
attgtaaatatatgtatatatcttgcattattagtggtataattgttttgattaaagtattgcacaaatcagattaagatgttaaccataggtattcctc |
29172232 |
T |
|
| Q |
356 |
taaaa-aatgttaaccacaattattgcacgtctttatcacaattttaccataataaacaataaaggtctactatgtttctaaatcacatcctatttgtcg |
454 |
Q |
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| T |
29172233 |
taaaaaaatgttaaccacaattattgcacgtctttatcacaattttaccataataaacaataaaggtctactatgtttctaaatcacatcctatttgtcg |
29172332 |
T |
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| Q |
455 |
aaatgaattttgagcattttggataggaagccaattaatccatgtgaacttaacaagccaattaccaagatagaattctagagaagta |
542 |
Q |
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| T |
29172333 |
aaatgaattttgagcattttggatagcaagccaattaatccatgtgaacttaacaagcc-attaccaagacagaattctagagaagta |
29172419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 158 - 542
Target Start/End: Original strand, 29209025 - 29209397
Alignment:
| Q |
158 |
atctattttgtttgattttttatatttgaaactggagtagtatttcacgattgatgtccttaattggatagaccagtaatgtacatattaatgctaaaat |
257 |
Q |
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| T |
29209025 |
atctattttgtttgattttttatatttgaaactg------------acgatcgatgtccttaattggatagatcagtaatgtacatattaatgctaaaat |
29209112 |
T |
|
| Q |
258 |
tgtaaatatatgtatatatcttgcattattagtggtataattgttttgattaaagcattgcacaaatcagattaagatgttaaccataggtattcctcta |
357 |
Q |
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| T |
29209113 |
tgtaaatatatgtatatatcttgcattattagtgctataattgttttgattaaagcaatgcacaaatcagattaagatgttaaccataggtattcctcta |
29209212 |
T |
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| Q |
358 |
aaa-aatgttaaccacaattattgcacgtctttatcacaattttaccataataaacaataaaggtctactatgtttctaaatcacatcctatttgtcgaa |
456 |
Q |
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| T |
29209213 |
aaaaaatgttaaccacaattattgcacgtctttatcacaattttaccataataaacaataaaggtctactatgtttctaaatcacatcctatttgtcgaa |
29209312 |
T |
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| Q |
457 |
atgaattttgagcattttggataggaagccaattaatccatgtgaacttaacaagccaattaccaagatagaattctagagaagta |
542 |
Q |
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| T |
29209313 |
atgaattttgagcattttggatagcaagccaattaatccatgtgaacttaacaagcc-attaccaagacagaattctagagaagta |
29209397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 29171877 - 29171969
Alignment:
| Q |
1 |
acatcatttcatgttcatatcttagttaggaactttttcaatttagattatttatcattgtattatttaaattattaacacttcttctaatct |
93 |
Q |
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| T |
29171877 |
acatcatttcatgttcatatcttagttaggaactttttcaatttagattatttatcattgtattatttaaattattaacacttcttctaatct |
29171969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 29208867 - 29208959
Alignment:
| Q |
1 |
acatcatttcatgttcatatcttagttaggaactttttcaatttagattatttatcattgtattatttaaattattaacacttcttctaatct |
93 |
Q |
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| T |
29208867 |
acatcatttcatgttcatatcttagtttagcacttttccaatttagattatttatcattgtattatttaaattattaacacttcttcttatct |
29208959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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