View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5740_low_9 (Length: 428)
Name: NF5740_low_9
Description: NF5740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5740_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 45 - 412
Target Start/End: Complemental strand, 3423624 - 3423256
Alignment:
| Q |
45 |
gaattacaaccatttagcttgcttggatagcaagtatatcaactaataagtcttaaccaacctgttacttgaaatccacataacagttagaaactaactc |
144 |
Q |
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| T |
3423624 |
gaattacactcatttagcttgcttgtatagcaagtatatcaactaataagtcttaaccaacctgttacttgaaatccacataacagttagaaactaactc |
3423525 |
T |
|
| Q |
145 |
aactaactctccaagttagttaactaataaactttaaccaagattgaattatcacataacaaatatgatacgatatcctatgcaattttatctagcacta |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3423524 |
aactaactctccaagttagttaactaataaactttaaccaagattgaattatcacataacaaatatgatacgatatcctatgcaattttatctagcacta |
3423425 |
T |
|
| Q |
245 |
gcattcgatccatgatatagcttccatggaagttaaaatttcattatgtataacgtgaaggtaaaaaacatactgaccttaaaaccagataagt-aataa |
343 |
Q |
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| T |
3423424 |
gcattcgatccatgatatagctttcatggaagttaaaatttcattatgtataacgtgaaggtaaaaaacatactgaccttaaaaccagataagtaaataa |
3423325 |
T |
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| Q |
344 |
tgtaagacacttgagtttgaattgaataaattttctaaggnnnnnnnggtttgaattgaataatagaat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3423324 |
tgtaagacacttgagtttgaattgaataaattttctaaggaaaaaaaggtttgaattgaataatagaat |
3423256 |
T |
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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 39 - 114
Target Start/End: Original strand, 109270 - 109345
Alignment:
| Q |
39 |
tacaatgaattacaaccatttagcttgcttggatagcaagtatatcaactaataagtcttaaccaacctgttactt |
114 |
Q |
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|||||||||||||||||||||| ||||||| |||||||||||||||||||| || |||||| |||| |||||||| |
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| T |
109270 |
tacaatgaattacaaccatttaacttgcttatatagcaagtatatcaactaacaaatcttaatcaacatgttactt |
109345 |
T |
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