View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5741_low_1 (Length: 296)
Name: NF5741_low_1
Description: NF5741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5741_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 280
Target Start/End: Complemental strand, 26609166 - 26608899
Alignment:
| Q |
13 |
aatatctaaaactattatagatattcagaaccttagtttatggtcacgatagggaagctttgtttaaaatcatggttataataaaacaagtgtttgtcta |
112 |
Q |
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| T |
26609166 |
aatatctaaaactattatagatattcagaaccttagtttatggtcacgatagggaagctttgtttaaaatcatggttataataaaacaagtgtttgtcta |
26609067 |
T |
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| Q |
113 |
aatattaagatcaggttatgaatgtagtcatattccctctttaggtnnnnnnnnnncttctaaatgtcaccaaattaagaggagataaaactggaaaatg |
212 |
Q |
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| T |
26609066 |
aatattaagatcagcttatgaatgtagtcatatttcctctttaggtaaaaaaaaaacttctaaatgtcaccaagttaagaggagataaaactggaaaatg |
26608967 |
T |
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| Q |
213 |
agtttataaatgagagacattcgtgattctattagtcgatttggatttaatgagttagacatgtaatt |
280 |
Q |
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| T |
26608966 |
agtttataaatgagagacattcgtgattctattaatcgatttggtattaatgagttagacatgtaatt |
26608899 |
T |
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