View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5741_low_2 (Length: 254)
Name: NF5741_low_2
Description: NF5741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5741_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 62 - 220
Target Start/End: Original strand, 48513999 - 48514157
Alignment:
| Q |
62 |
atactcagcatttattcagtggcaaatcatgaattagctaggtttggtaggttgagttgggtttgaatctttggttctgaattaatgcaacagaacagtt |
161 |
Q |
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| T |
48513999 |
atactcagcattcattcagtggcaaatcatgaattagctaggtttggtaggttgagttgggtttgaatctttggttctgaattaatgcaacagaacagtt |
48514098 |
T |
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| Q |
162 |
ttataatctcaacttgagaactggttcctagggaattcaccaaccatattcttcgacat |
220 |
Q |
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| T |
48514099 |
ttataatctcaacttgagaactggttcctagggaattcaccaaccatatttttggacat |
48514157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 48508891 - 48508957
Alignment:
| Q |
1 |
ataacttgtaatactgaagatttatatggataaggaattttcacgtgactagagtaggtgtatactc |
67 |
Q |
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| T |
48508891 |
ataacttgtaatactgaagatttatatgtataaggaattttcacatgactagagtaggtgtatactc |
48508957 |
T |
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