View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5742-Insertion-2 (Length: 508)
Name: NF5742-Insertion-2
Description: NF5742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5742-Insertion-2 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 3e-80; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 357 - 508
Target Start/End: Original strand, 34900319 - 34900470
Alignment:
| Q |
357 |
tctcttatttattaagtgaactcggatttcaatatgaaaaactagtttaaggaattagggtggctaaacacatcactcagacaatcactattataaacaa |
456 |
Q |
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| T |
34900319 |
tctcttatttattaagtgaactcggatttcaatatgaaaaactagtttaaggaattagggtggctaaacacatcactcagacaatcactattataaacaa |
34900418 |
T |
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| Q |
457 |
aattcattgaataattgatttacggtataagagtagtccatatacattaata |
508 |
Q |
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| T |
34900419 |
aattcattgaataattgatttacggtataagagtagtccatatacattaata |
34900470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 136 - 262
Target Start/End: Original strand, 34900098 - 34900224
Alignment:
| Q |
136 |
atcatcttttacaatgtgacatattcatttatgacgtgtcgcgcttattagactccactaaaaatccatgttaaataaatatatgtttaataagcattga |
235 |
Q |
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| T |
34900098 |
atcatcttttacaatgtgacatattcatttatgacgtgtcgcgcttattagactccactaaaaatccatgttaaataaatatatgtttaataagcattga |
34900197 |
T |
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| Q |
236 |
cacaccataaatgattagacacatcat |
262 |
Q |
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| T |
34900198 |
cacaccataaatgattagacacatcat |
34900224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 34899970 - 34900029
Alignment:
| Q |
8 |
tgagatgtacttttggtccttgtactttataaaaataagttttgtttggccctcttattc |
67 |
Q |
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| T |
34899970 |
tgagatgtacttttggtccttgtactttataaaaataagttttgtttggccctcttattc |
34900029 |
T |
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