View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5742_high_1 (Length: 795)

Name: NF5742_high_1
Description: NF5742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5742_high_1
NF5742_high_1
[»] chr2 (1 HSPs)
chr2 (8-787)||(36605795-36606574)


Alignment Details
Target: chr2 (Bit Score: 703; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 703; E-Value: 0
Query Start/End: Original strand, 8 - 787
Target Start/End: Original strand, 36605795 - 36606574
Alignment:
Q  8 gacatcatcaaaagctgggggaagatggccagaagcaggcctttctgttgctagattctgtaaaaccattcccttctcttcttctaaaactttctggctt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36605795 gacatcatcaaaagctgggggaagatggccagaagcaggcctttctgttgctagattctgtaaaaccattcccttctcttcttctaaaactttctggctt 36605894  T
Q  108 gaaattttagtagatatattcagaggtgcaatttcagccactgaggacactctttccctcaccatgaacttgtcatcaccagttgagatgtacataagct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36605895 gaaattttagtagatatattcagaggtgcaatttcagccactgaggacactctttccctcaccatgaacttgtcatcaccagttgagatgtacataagct 36605994  T
Q  208 ttggctggctaactttatgaggcctattagttggcaagcttgctggactaacttcacaaacagacttttttccagaaatggaaagtgaatgtttgagaga 307  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36605995 ttggctggctaactttatgaggcctattatttggcaagcttactggactaacttcacaaacagacttttttccagaaatggaaagtgaatgtttgagaga 36606094  T
Q  308 attgatcgaagccatttccttacaaatatcttgaaggtttttgatttcttgtgtgactttggcagacggaacatcaaactcaacggcatcagatgtagtt 407  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  36606095 attgattgaagccatttccttacaaatatcttgaaggtttttgatttcttgtgtgactttggcagacggaacatcacactcaacgacatcagatgtagtt 36606194  T
Q  408 gtttgatttataagaaaactatcatacattactgagtgatccagagttaacctgggacttactttctcattacaagtaatggtattttgaaaagttggtg 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  36606195 gtttgatttataagaaaactatcatacattactgagtgatccagagttaacctgggacttactttctcattacgagtaatggtattctgaaaagttggtg 36606294  T
Q  508 taaacggagaggattcaccagaaatattttcatcaggaccatcactgttggcacgtgatcccacaatttcagtgtgattaaaactcccatgttcaggggg 607  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36606295 taaactgagaggattcaccagaaatattttcatcaggaccaccactgttggcacgtgatcccacaatttcagtgtgattaaaactcccatgttcaggggg 36606394  T
Q  608 tgttggttcactcaagtcaataaaagtgtttgcgaagtcaaaaagttcaaatccttgaatggagactgaagatgaaacagaattgttgctggttgcttgc 707  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||   ||||||||||||||||    
T  36606395 tgttggttcactcaagtcaataaaagtgtttgcaaagtcaaaaagttcaaatccttgaatagagactgaagatgaaacaga---gttgctggttgcttgc 36606491  T
Q  708 attcctttggtactactttcaaaagccttcaaaggctctctagaaacatgtggcagatga---ttaggtaaccgatgatgtcc 787  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||   ||||| ||||||||||||||    
T  36606492 attcctttggtactactttcaaaagccttcaaaggctctttagaaacatgtggcagatgaccgttaggcaaccgatgatgtcc 36606574  T

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