View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5742_high_12 (Length: 354)
Name: NF5742_high_12
Description: NF5742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5742_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 11 - 345
Target Start/End: Complemental strand, 17701394 - 17701060
Alignment:
| Q |
11 |
catcatgaacaaacactattcttcaccttcttctcaccattcctttgataaacccaaaaacagccatgattatgatcaccaacaatctcttgaaaatgat |
110 |
Q |
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| T |
17701394 |
catcatgaacaaacactattcttcaccttcttctcaccattcgtttgataaacccaaaaacagccatgatcatgatcaccaacaatctcttgaaaatgat |
17701295 |
T |
|
| Q |
111 |
aagaaaaacccaggttcaagaatctacagttgtgagttctgtcacaaaacattcacctctagtaaatcacttggtggccacaaaaccattcaccgcttct |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
17701294 |
aagaaaaacccaggttcaagaatctacagttgtgagttttgtcacaaaacattcacctctagtaaatcacttggtggccacaaaaccattcaccgctcct |
17701195 |
T |
|
| Q |
211 |
ctaagattcttgttcaacctgaaacaaacaaacagatccacgatcatgatgtgaataatggcggcaccttgaagaagactacaaaaattagttgtgtttt |
310 |
Q |
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| T |
17701194 |
cgaagattcttgttcaacctgaaacaaacaaacagatccatgatcatgatgtgaataacggcggcaccttgaagaagactataaaaattacttgtgtttt |
17701095 |
T |
|
| Q |
311 |
ttcttcttctcttcacaaccatgatcatgatgatg |
345 |
Q |
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| T |
17701094 |
ttcttcttctcttcacaaccatgatcatgatgatg |
17701060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 11 - 344
Target Start/End: Original strand, 17662685 - 17663018
Alignment:
| Q |
11 |
catcatgaacaaacactattcttcaccttcttctcaccattcctttgataaacccaaaaacagccatgattatgatcaccaacaatctcttgaaaatgat |
110 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
17662685 |
catcatgaacaaaccctattcttcaccttcttctcaccattcgtttcataaacccaaaaacagccatgatcatgatcaccaacaatctcttgaaaatgat |
17662784 |
T |
|
| Q |
111 |
aagaaaaacccaggttcaagaatctacagttgtgagttctgtcacaaaacattcacctctagtaaatcacttggtggccacaaaaccattcaccgcttct |
210 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
17662785 |
aagaaaaacccaggttcaagaatctacaattgtgagttttgtcacaaaacattcacctctagtaaatcacttggtggccacaaaaccattcaccgctcct |
17662884 |
T |
|
| Q |
211 |
ctaagattcttgttcaacctgaaacaaacaaacagatccacgatcatgatgtgaataatggcggcaccttgaagaagactacaaaaattagttgtgtttt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17662885 |
ctaagattcttgttcaacctgaaacaaacaaacagatccgtgatcatgatgtgaataacggcggcaccttgaagaagactacaaaaattacttgtgtttt |
17662984 |
T |
|
| Q |
311 |
ttcttcttctcttcacaaccatgatcatgatgat |
344 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
17662985 |
ttcttcttctcttcacaaccatgatcatgatgat |
17663018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 22667820 - 22667771
Alignment:
| Q |
17 |
gaacaaacactattcttcaccttcttctcaccattcctttgataaaccca |
66 |
Q |
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| T |
22667820 |
gaacaaacactattcttcaccttcttctcattattcgtttgataaaccca |
22667771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 344
Target Start/End: Complemental strand, 21900125 - 21900087
Alignment:
| Q |
306 |
gttttttcttcttctcttcacaaccatgatcatgatgat |
344 |
Q |
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| T |
21900125 |
gttttttcttcttctcttcacaatcataatcatgatgat |
21900087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 22667110 - 22667050
Alignment:
| Q |
58 |
ataaacccaaaaacagccatgattatgatcaccaacaatctcttgaaaatgataagaaaaa |
118 |
Q |
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|||||||||| |||||||||||| | ||||||||| | ||||||||| ||||| |||||| |
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| T |
22667110 |
ataaacccaacaacagccatgatcaagatcaccaagagactcttgaaactgatatgaaaaa |
22667050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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