View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5742_high_14 (Length: 350)

Name: NF5742_high_14
Description: NF5742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5742_high_14
NF5742_high_14
[»] chr8 (1 HSPs)
chr8 (41-333)||(39370780-39371077)


Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 41 - 333
Target Start/End: Original strand, 39370780 - 39371077
Alignment:
Q  41 gtgaatcaaatgacaaaccaaaccctgtaaatcacgtgaagtttgcacacatgaagtttgccaaaagatccgcgcaaatatttgcttctctataactgtg 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39370780 gtgaatcaaatgacaaaccaaaccctgtaaatcacgtgaagtttgcacacatgaagtttgccaaaagatccgcgcaaatatttgcttctctataactgtg 39370879  T
Q  141 acaaatgcaaacctctcactcaagctgcatgagtgtatgaactttgtgcaaaagagttctcgcagccatggaagaagccccaaaccgtgaatttcctcaa 240  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39370880 acaaatgcaaacctctcgctcaagctgcatgagtgtatgaactttgtgcaaaagagttctcgcagccatggaagaagccccaaaccgtgaatttcctcaa 39370979  T
Q  241 caataatggatgatcccacagtaatctatacttcttgtatttggattctagga-----tagttttccaattgacagcatgaactttcctactattctc 333  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||    
T  39370980 caataatggatgaacccacagtaatctctacttcttgtatttggattctaggatagtttagttttccaattgacagcatgaactttcctactattctc 39371077  T

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