View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5742_high_21 (Length: 312)

Name: NF5742_high_21
Description: NF5742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5742_high_21
NF5742_high_21
[»] chr3 (1 HSPs)
chr3 (9-304)||(46441770-46442065)


Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 9 - 304
Target Start/End: Original strand, 46441770 - 46442065
Alignment:
Q  9 agcataggcgagctttggggagttttgcttgggcttcagatggtgattgatcgaggattcaaggcggtggagactggagttgtgtattgattcccaagca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46441770 agcataggcgagctttggggagttttgcttgggcttcagatggtgattgatcgaggattcaaggcggtggagactggagttgtgtattgattcccaagca 46441869  T
Q  109 gttatcatgattcatgagtattaagaaagggtgtgttagtgccaatggttggagaccagtgcagaaaattcggcaactaatggagcgtgagcgggaaata 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46441870 gttatcatgattcatgagtattaagaaagggtgtgttagtgccaatggttggagaccagtgcagaaaattcggcaactaatggagcgtgagcgggaaata 46441969  T
Q  209 acgataagtcattcttatcgggaagcgaacatgtgtgcagatggacttgctaatattggatgtcgtagtagcacaaatttaatagtttatgatgat 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46441970 acgataagtcattcttatcgggaagcgaacatgtgtgcagatggacttgctaatattggatgtcgtagtagcacaaatttaatagtttatgatgat 46442065  T

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