View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5742_high_26 (Length: 271)

Name: NF5742_high_26
Description: NF5742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5742_high_26
NF5742_high_26
[»] chr3 (3 HSPs)
chr3 (9-266)||(11897148-11897405)
chr3 (9-267)||(26432588-26432846)
chr3 (110-194)||(23424570-23424654)
[»] chr8 (3 HSPs)
chr8 (9-266)||(23132475-23132732)
chr8 (110-259)||(26587231-26587380)
chr8 (14-172)||(14760016-14760174)
[»] chr1 (3 HSPs)
chr1 (9-266)||(20284849-20285106)
chr1 (101-268)||(50236550-50236717)
chr1 (113-194)||(50451967-50452048)
[»] chr2 (11 HSPs)
chr2 (9-266)||(14653570-14653827)
chr2 (113-259)||(26791325-26791471)
chr2 (56-189)||(35135159-35135292)
chr2 (56-189)||(40328252-40328385)
chr2 (101-210)||(16322502-16322611)
chr2 (113-189)||(573266-573342)
chr2 (116-189)||(3779048-3779121)
chr2 (113-164)||(35062956-35063007)
chr2 (108-194)||(42403209-42403295)
chr2 (113-258)||(177504-177649)
chr2 (128-189)||(19265490-19265551)
[»] scaffold0036 (1 HSPs)
scaffold0036 (98-203)||(75967-76072)
[»] chr4 (3 HSPs)
chr4 (116-267)||(54477407-54477558)
chr4 (113-194)||(3881787-3881868)
chr4 (110-213)||(46784469-46784572)
[»] chr5 (2 HSPs)
chr5 (113-219)||(32874457-32874563)
chr5 (113-267)||(7817131-7817285)
[»] chr6 (4 HSPs)
chr6 (110-210)||(24990660-24990760)
chr6 (110-267)||(24893833-24893990)
chr6 (97-210)||(13599639-13599752)
chr6 (113-220)||(27852952-27853059)
[»] chr7 (2 HSPs)
chr7 (97-210)||(16769946-16770059)
chr7 (97-210)||(27781614-27781727)


Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 9 - 266
Target Start/End: Complemental strand, 11897405 - 11897148
Alignment:
Q  9 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  11897405 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggacgactgctgagttgatagtagc 11897306  T
Q  109 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccgttc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11897305 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 11897206  T
Q  209 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatgatgatgt 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11897205 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgt 11897148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 9 - 267
Target Start/End: Original strand, 26432588 - 26432846
Alignment:
Q  9 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc 108  Q
    ||||||||| |||||| ||||| ||||||||||||||||||||||| |||||||| || ||| ||||||||||||||| ||| || ||||||||||||||    
T  26432588 ggacatcatttgcaaaaaggaggtgggataaatgcggccccgtaggagtgatttgaatcggttcccatcttccttgggtgacggcggagttgatagcagc 26432687  T
Q  109 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccgttc 208  Q
     || |||||||||||||||| |||||| |||||||||||||| ||||||||||||||||| ||||| ||||| ||||||| ||||||||||||||| |||    
T  26432688 ggatagcttttccatgcaaatgatgaagagataaggggacaatggatcaccttgtcggagaccatgagaaggtttgaaagacggcaacttgttcccattc 26432787  T
Q  209 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatgatgatgtc 267  Q
    ||||||||||||||  | |  ||||  || |||||||||||||| |||||| |||||||    
T  26432788 caaagtatagagtagtttgatgaagagacacaatgcatgatgagtttgatggtgatgtc 26432846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 23424654 - 23424570
Alignment:
Q  110 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggca 194  Q
    ||||||||||||||||| || |||||||||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||    
T  23424654 gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggca 23424570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 9 - 266
Target Start/End: Original strand, 23132475 - 23132732
Alignment:
Q  9 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc 108  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23132475 ggacatcatctgcaaataggagatgggataaatggggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc 23132574  T
Q  109 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccgttc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23132575 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacgtatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 23132674  T
Q  209 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatgatgatgt 266  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  23132675 caaagtatagagtaactaggagaagctacgcaatgcatgatgaacttgatggtgatgt 23132732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 259
Target Start/End: Complemental strand, 26587380 - 26587231
Alignment:
Q  110 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccgttcc 209  Q
    ||||| || ||||| ||||| ||||| || || || ||||| || |||||||||||||||||||| | ||||||||| || ||||| ||||| || || |    
T  26587380 gaaagtttctccatacaaagaatgaagaggtagggagacaatgggtcaccttgtcggaggccatgagtaggcttgaaggggggcaatttgttaccatttc 26587281  T
Q  210 aaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatg 259  Q
    |||| || | | |  |||  ||||  ||||||||||||||||| ||||||    
T  26587280 aaaggatggtgaaggtagatgaagtgacgcaatgcatgatgagtttgatg 26587231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 172
Target Start/End: Complemental strand, 14760174 - 14760016
Alignment:
Q  14 tcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaa 113  Q
    |||||||||||||| || || ||||  || |||||||||   |||||||| |  ||| |||| ||||||||   ||| ||||| || ||||||   || |    
T  14760174 tcatctgcaaatagtaggtgagatatctggggccccgtatttgtgatttgaaccggttcccaacttccttgattgaccgctgaatttatagcaatagaga 14760075  T
Q  114 gcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggcca 172  Q
    |||||||||| ||||| ||||| || || |||||||||||||| ||||| || ||||||    
T  14760074 gcttttccatacaaagaatgaagaggtatggggacaacggatctccttggcgaaggcca 14760016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 266
Target Start/End: Complemental strand, 20285106 - 20284849
Alignment:
Q  9 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20285106 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc 20285007  T
Q  109 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccgttc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||   |||||||||    
T  20285006 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcgcaggccatgagaaggctcgaaaggcggcaaccctttcccgttc 20284907  T
Q  209 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatgatgatgt 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20284906 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgt 20284849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 268
Target Start/End: Original strand, 50236550 - 50236717
Alignment:
Q  101 atagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgt 200  Q
    |||||| |||| || || ||||| || | ||||||||| |||||||| | ||||||||||| || ||||||||| | |||||||||||| |||| |||||    
T  50236550 atagcaactgatagtttctccatacacaagatgaaaaggtaaggggaaagcggatcaccttatctgaggccatgagtaggcttgaaagggggcatcttgt 50236649  T
Q  201 tcccgttccaaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatgatgatgtcc 268  Q
    |||||||||| |  ||||||||  | || || |  || |||||||||||||| ||| || ||||||||    
T  50236650 tcccgttccataagatagagtaggtgggtgaggagacacaatgcatgatgagtttggtggtgatgtcc 50236717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 50452048 - 50451967
Alignment:
Q  113 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggca 194  Q
    ||||| ||||| ||||| ||||| || ||||| || | |||||||||||||||||||||||| | ||| |||||| ||||||    
T  50452048 agcttctccatacaaagaatgaagaggtaaggagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggca 50451967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 266
Target Start/End: Original strand, 14653570 - 14653827
Alignment:
Q  9 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  14653570 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggagtgatttggatgggtgcccatcttccttgggcaactgctgagtttatagcagc 14653669  T
Q  109 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccgttc 208  Q
     || ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||    
T  14653670 ggatagcttttccatgcaaaggatgaaaaaataaggggacaacggatcaccttgttggaggccatgagaaggcttgaaaggcggcaacttgttcccattc 14653769  T
Q  209 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatgatgatgt 266  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  14653770 caaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgt 14653827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 259
Target Start/End: Complemental strand, 26791471 - 26791325
Alignment:
Q  113 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccgttccaaa 212  Q
    ||||| ||||||||||| || ||||| || ||||| | ||||||||| || | ||||||||| | ||||| |||||| |||||| | || || |||||||    
T  26791471 agcttctccatgcaaagaataaaaaggtacggggaaagcggatcaccctgcctgaggccatgagtaggctcgaaaggaggcaacctatttccattccaaa 26791372  T
Q  213 gtatagagtaactaggagaagctacgcaatgcatgatgagcttgatg 259  Q
    | |||||| | || |  ||||  ||||||||||||||||||||||||    
T  26791371 gaatagagaagctggatgaagtaacgcaatgcatgatgagcttgatg 26791325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 189
Target Start/End: Original strand, 35135159 - 35135292
Alignment:
Q  56 gtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggat 155  Q
    |||||||| || ||| ||||||| ||||||  ||| || || ||||| ||| | || || |||||||| || ||||||||||||||||| |||||||| |    
T  35135159 gtgatttgtatcggttcccatctcccttggttgacagcggaattgattgcaacagagagtttttccatacataggatgaaaagataaggagacaacgggt 35135258  T
Q  156 caccttgtcggaggccatgcgaaggcttgaaagg 189  Q
    ||||||| || || ||||| | ||||||||||||    
T  35135259 caccttgacgaagtccatgagtaggcttgaaagg 35135292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 189
Target Start/End: Complemental strand, 40328385 - 40328252
Alignment:
Q  56 gtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggat 155  Q
    |||||||| || ||| ||||||| ||||||  ||| || || ||||| ||| | || || |||||||| || ||||||||||||||||| |||||||| |    
T  40328385 gtgatttgtatcggttcccatctcccttggttgacagcggaattgattgcaacagagagtttttccatacataggatgaaaagataaggagacaacgggt 40328286  T
Q  156 caccttgtcggaggccatgcgaaggcttgaaagg 189  Q
    ||||||| || || ||||| | ||||||||||||    
T  40328285 caccttgacgaagtccatgagtaggcttgaaagg 40328252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 210
Target Start/End: Complemental strand, 16322611 - 16322502
Alignment:
Q  101 atagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgt 200  Q
    |||||| | ||||| |||||||||||||| |||||||| || || || | ||| ||||||||||| |||||||| |  ||||||||||| |||| |||||    
T  16322611 atagcaacagaaagtttttccatgcaaagtatgaaaaggtacggagaaagcgggtcaccttgtcgaaggccatgagtgggcttgaaaggaggcatcttgt 16322512  T
Q  201 tcccgttcca 210  Q
    | || |||||    
T  16322511 ttccattcca 16322502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 573342 - 573266
Alignment:
Q  113 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaagg 189  Q
    ||||| ||||||||||||||||| || ||||| || | |||||||||||||| ||||||||| ||||| || |||||    
T  573342 agcttctccatgcaaaggatgaataggtaaggagagagcggatcaccttgtctgaggccatgggaaggtttaaaagg 573266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 3779048 - 3779121
Alignment:
Q  116 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaagg 189  Q
    |||||||| || ||||||||||||||||| |||| ||| |||||||| || || ||||| | ||||||||||||    
T  3779048 ttttccatacagaggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaagg 3779121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 164
Target Start/End: Original strand, 35062956 - 35063007
Alignment:
Q  113 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtc 164  Q
    ||||||||||| ||||||||||||||||| ||||| |  |||||||||||||    
T  35062956 agcttttccatacaaaggatgaaaagatagggggatagtggatcaccttgtc 35063007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 194
Target Start/End: Original strand, 42403209 - 42403295
Alignment:
Q  108 ctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggca 194  Q
    ||||||||||||||||||| || || || |||||||| || |  || |||||||| ||||||||||| |  ||||||||||| ||||    
T  42403209 ctgaaagcttttccatgcacagtataaatagataaggtgagagagggtcaccttgccggaggccatgagtgggcttgaaaggaggca 42403295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 258
Target Start/End: Complemental strand, 177649 - 177504
Alignment:
Q  113 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccgttccaaa 212  Q
    |||||||||||||| | |||||| || ||||| ||||| || ||||||||||  || ||||| | |||||||| ||| ||| | ||||| || |||||||    
T  177649 agcttttccatgcagatgatgaataggtaaggagacaaagggtcaccttgtcttagaccatgagtaggcttgataggaggccatttgtttccattccaaa 177550  T
Q  213 gtatagagtaactaggagaagctacgcaatgcatgatgagcttgat 258  Q
    | | |||| |  | | |||||  || |||||||||||||| |||||    
T  177549 gaacagagaatgttgaagaagtgacacaatgcatgatgagtttgat 177504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 19265551 - 19265490
Alignment:
Q  128 aggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaagg 189  Q
    ||||||||||||||||| |||| ||| |||||||| || || ||||| | ||||||||||||    
T  19265551 aggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaagg 19265490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 76072 - 75967
Alignment:
Q  98 ttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaact 197  Q
    ||||||||| | || ||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| ||||| | ||||||||| |  |||| ||    
T  76072 ttgatagcaacagagagcttttccatgcaaaggatgaaaagataaggggacaactggtcaccttgtctgagaccatgagtaggcttgaaggaaggcagct 75973  T
Q  198 tgttcc 203  Q
    ||||||    
T  75972 tgttcc 75967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 267
Target Start/End: Original strand, 54477407 - 54477558
Alignment:
Q  116 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccgttccaaagta 215  Q
    |||||||||||||| ||||| |||||||||||||| ||||||||||| || || ||||| | |||||||||||  || | |||||| || |||||||| |    
T  54477407 ttttccatgcaaagaatgaagagataaggggacaaaggatcaccttggcgcagaccatgtgtaggcttgaaagatggaagcttgtttccattccaaagga 54477506  T
Q  216 tagagtaactaggagaagctacgcaatgcatgatgagcttgatgatgatgtc 267  Q
    || ||||  | |  || |  || ||||||||||||||||||||| |||||||    
T  54477507 taaagtattttgatgatgaaacacaatgcatgatgagcttgatggtgatgtc 54477558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 3881868 - 3881787
Alignment:
Q  113 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggca 194  Q
    ||||||||||| ||||| ||||| || ||| | || | |||||||||||||||||||||||| | ||| |||||| ||||||    
T  3881868 agcttttccatacaaagaatgaagaggtaaagagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggca 3881787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 213
Target Start/End: Original strand, 46784469 - 46784572
Alignment:
Q  110 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccgttcc 209  Q
    ||||| |||| ||||||||||||||| || || || || |  |||||||||||||  |||||||| | ||| |||||||||||||| || || || ||||    
T  46784469 gaaagttttttcatgcaaaggatgaagaggtagggagatagaggatcaccttgtctaaggccatgagtaggtttgaaaggcggcaatttatttccattcc 46784568  T
Q  210 aaag 213  Q
    ||||    
T  46784569 aaag 46784572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 113 - 219
Target Start/End: Original strand, 32874457 - 32874563
Alignment:
Q  113 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccgttccaaa 212  Q
    |||||||||||||||| |||||| | ||| || || | ||| || ||||| ||||||||||| |||||||||||||| |||||||||||||| || ||||    
T  32874457 agcttttccatgcaaatgatgaataaatagggagagagcgggtctccttggcggaggccatgagaaggcttgaaaggaggcaacttgttcccatttcaaa 32874556  T
Q  213 gtataga 219  Q
    | |||||    
T  32874557 ggataga 32874563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 267
Target Start/End: Complemental strand, 7817285 - 7817131
Alignment:
Q  113 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccgttccaaa 212  Q
    ||||||||||||||||| |||||||| ||||| || || || ||||| |||| ||| ||||| | |||||||||||  || |  |||||||| ||||| |    
T  7817285 agcttttccatgcaaagaatgaaaaggtaaggagataaagggtcaccctgtctgagaccatgagtaggcttgaaagaaggaagtttgttcccattccata 7817186  T
Q  213 gtatagagtaactaggagaagctacgcaatgcatgatgagcttgatgatgatgtc 267  Q
      ||||||||  | |  || | ||| ||||||||||||||||||||  |||||||    
T  7817185 aaatagagtagttggaggatgatacacaatgcatgatgagcttgattgtgatgtc 7817131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 210
Target Start/End: Original strand, 24990660 - 24990760
Alignment:
Q  110 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccgttcc 209  Q
    |||||||| ||||||||||| |||||||||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||  ||||| |||||||    
T  24990660 gaaagcttctccatgcaaagaatgaaaagataaggagagagcgggtcaccttgtctgagaccatgggtgggcttgaaagggggcattttgttaccgttcc 24990759  T
Q  210 a 210  Q
    |    
T  24990760 a 24990760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 267
Target Start/End: Original strand, 24893833 - 24893990
Alignment:
Q  110 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccgttcc 209  Q
    ||||||||||||||||| || |||||||||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||  ||||| || ||||    
T  24893833 gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggcattttgttaccattcc 24893932  T
Q  210 aaagtatagagtaactaggagaagct-acgcaatgcatgatgagcttgatgatgatgtc 267  Q
    | | ||| ||| ||   |||| || | || ||||||||||||||||||||| |||||||    
T  24893933 ataatatggag-aatgtggaggaggtgacacaatgcatgatgagcttgatggtgatgtc 24893990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 210
Target Start/End: Complemental strand, 13599752 - 13599639
Alignment:
Q  97 gttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaac 196  Q
    |||||| ||||||||||| |||||||| || | |||||| |||||||| || |  ||||||||||| |||||  |||| | |||||||||  |||| |||    
T  13599752 gttgatggcagctgaaagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgacggagatcatgagtaggcttgaattgcggaaac 13599653  T
Q  197 ttgttcccgttcca 210  Q
    ||||| || |||||    
T  13599652 ttgttaccattcca 13599639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 220
Target Start/End: Original strand, 27852952 - 27853059
Alignment:
Q  113 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccgttccaaa 212  Q
    ||||||||||| ||||||||||| |  ||||| || || || || |||||||  || ||||| |||||||||||||  ||||  ||||| ||||||||||    
T  27852952 agcttttccatacaaaggatgaataagtaaggagataaagggtccccttgtcttagaccatgagaaggcttgaaagaaggcattttgtttccgttccaaa 27853051  T
Q  213 gtatagag 220  Q
    | ||||||    
T  27853052 gaatagag 27853059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 210
Target Start/End: Original strand, 16769946 - 16770059
Alignment:
Q  97 gttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaac 196  Q
    |||||| || ||||| || |||||||| || | |||||| |||||||| || |  |||||||||||||| || ||||| | ||| |||||| |||||||     
T  16769946 gttgatggctgctgagagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgtcgaagaccatgagtaggtttgaaatgcggcaat 16770045  T
Q  197 ttgttcccgttcca 210  Q
    ||||| || |||||    
T  16770046 ttgttaccattcca 16770059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 210
Target Start/End: Original strand, 27781614 - 27781727
Alignment:
Q  97 gttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaac 196  Q
    |||||||||| |  ||||||| |||||||| |||||||| || ||||| || |  || |||||||||| ||||||||| |  ||||| || || ||||      
T  27781614 gttgatagcaaccaaaagcttctccatgcagaggatgaagaggtaaggtgaaagagggtcaccttgtctgaggccatgagttggcttaaatggaggcatt 27781713  T
Q  197 ttgttcccgttcca 210  Q
    ||||||||||||||    
T  27781714 ttgttcccgttcca 27781727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University