View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5742_high_27 (Length: 263)
Name: NF5742_high_27
Description: NF5742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5742_high_27 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0380 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 263
Target Start/End: Original strand, 18176796 - 18177042
Alignment:
| Q |
17 |
cagtagctaggtatggataaggaggcatagcatacatatggtgagctacaataatgggcaaagagcctaacatagctaggttaatagctaattgagcatg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
18176796 |
cagtagctaggtatggataaggaggcatagcatacatatggtgagctacaataatggtcaaagagcctaacatagctaggttaatagataattgagcatg |
18176895 |
T |
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| Q |
117 |
ccatgacgttgttaggatctcatatagacctttatgaccttggcctgtaaatggacctttatgggcctctaaaatatctcttataccatgaccaataccc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18176896 |
ccatgacgttgttaggatctcatatagacctttatgaccttggcctgtaaatggacctttatgggcctctaaaatatctcttataccatgaccaataccc |
18176995 |
T |
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| Q |
217 |
caattagttctatacatatgaccggcaatgagaaaaagaattgcaat |
263 |
Q |
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| T |
18176996 |
caattagttctatacatatgaccggcaatgagaaaaagaattgcaat |
18177042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 13217298 - 13217052
Alignment:
| Q |
17 |
cagtagctaggtatggataaggaggcatagcatacatatggtgagctacaataatgggcaaagagcctaacatagctaggttaatagctaattgagcatg |
116 |
Q |
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| T |
13217298 |
cagtagctaggtatggataaggaggcatagcatacatatggtgagctacaataatggtcaaagagcttaacatagctaggttaatagataattgagcatg |
13217199 |
T |
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| Q |
117 |
ccatgacgttgttaggatctcatatagacctttatgaccttggcctgtaaatggacctttatgggcctctaaaatatctcttataccatgaccaataccc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
13217198 |
ccatgacgttgttaggatctcatatagacctttatgaccttggcctgtaaatggacctttatgggcctctaaaatatctcttataccatgaccaatagcc |
13217099 |
T |
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| Q |
217 |
caattagttctatacatatgaccggcaatgagaaaaagaattgcaat |
263 |
Q |
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| T |
13217098 |
caattagttctatacatatgaccggcaatgagaaaaagaattgcaat |
13217052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 263
Target Start/End: Complemental strand, 13219355 - 13219276
Alignment:
| Q |
184 |
tctaaaatatctcttataccatgaccaataccccaattagttctatacatatgaccggcaatgagaaaaagaattgcaat |
263 |
Q |
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|||||||||||| |||||| || |||||||| | |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
13219355 |
tctaaaatatcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaat |
13219276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 32 - 263
Target Start/End: Original strand, 14541167 - 14541398
Alignment:
| Q |
32 |
gataaggaggcatagcatacatatggtgagctacaataatgggcaaagagcctaacatagctaggttaatagctaattgagcatgccatgacgttgttag |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||| |||||||||||||| |
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| T |
14541167 |
gataaggaggcatagcatacatatggtgagctacaataatggtgaaagagcctaacatagttaggttaatagataattgagcatgtcatgacgttgttag |
14541266 |
T |
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| Q |
132 |
gatctcatatagacctttatgaccttggcctgtaaatggacctttatgggcctctaaaatatctcttataccatgaccaataccccaattagttctatac |
231 |
Q |
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| T |
14541267 |
gatctcatataaacctttatgaccatggcctgtgaatggatctttatgggcctctgaaatatcttttataccatgaccaatatcccagttagttttatac |
14541366 |
T |
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| Q |
232 |
atatgaccggcaatgagaaaaagaattgcaat |
263 |
Q |
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||||||||| |||||||||||||||||||||| |
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| T |
14541367 |
atatgaccgacaatgagaaaaagaattgcaat |
14541398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 3700086 - 3700034
Alignment:
| Q |
19 |
gtagctaggtatggataaggaggcatagcatacatatggtgagctacaataat |
71 |
Q |
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|||||||||||||||||||||| |||| |||| ||||||||||||||| |||| |
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| T |
3700086 |
gtagctaggtatggataaggagacatatcataaatatggtgagctacagtaat |
3700034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 17 - 263
Target Start/End: Original strand, 240411 - 240657
Alignment:
| Q |
17 |
cagtagctaggtatggataaggaggcatagcatacatatggtgagctacaataatgggcaaagagcctaacatagctaggttaatagctaattgagcatg |
116 |
Q |
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||||||||||||||||||| |||||||||| ||||||||| |||||||||| ||||| |||||||| |||||||||||||| || |||||||||||| |
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| T |
240411 |
cagtagctaggtatggatagggaggcatagaatacatatgatgagctacaacaatggttgtagagcctagcatagctaggttaagagataattgagcatg |
240510 |
T |
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| Q |
117 |
ccatgacgttgttaggatctcatatagacctttatgaccttggcctgtaaatggacctttatgggcctctaaaatatctcttataccatgaccaataccc |
216 |
Q |
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|||||||||||||| ||| ||||| ||||| ||||| ||||| ||||||||||| || || || ||||| ||||||||| | | ||||| ||||||||| |
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| T |
240511 |
ccatgacgttgttaagatttcataaagacccttatggccttgtcctgtaaatgggcccttgtgagcctccaaaatatctttaagtccatggccaataccc |
240610 |
T |
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| Q |
217 |
caattagttctatacatatgaccggcaatgagaaaaagaattgcaat |
263 |
Q |
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|| || || |||||||||||||| || || || |||||||| ||||| |
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| T |
240611 |
cagttggtcctatacatatgacctgcgattaggaaaagaatagcaat |
240657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 151 - 263
Target Start/End: Complemental strand, 39048070 - 39047958
Alignment:
| Q |
151 |
tgaccttggcctgtaaatggacctttatgggcctctaaaatatctcttataccatgaccaataccccaattagttctatacatatgaccggcaatgagaa |
250 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
39048070 |
tgaccttggcctgtaaatggacctttatgggcctctaaaatatctcttataccatgaccaatatcccaattagttctatacatatgaccggtaatgagaa |
39047971 |
T |
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| Q |
251 |
aaagaattgcaat |
263 |
Q |
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||||||||||||| |
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| T |
39047970 |
aaagaattgcaat |
39047958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0380
Description:
Target: scaffold0380; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 15727 - 15680
Alignment:
| Q |
216 |
ccaattagttctatacatatgaccggcaatgagaaaaagaattgcaat |
263 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
15727 |
ccaattagttctatacatatgactggcaatgtgaaaaagaattgcaat |
15680 |
T |
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