View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5742_high_3 (Length: 557)

Name: NF5742_high_3
Description: NF5742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5742_high_3
NF5742_high_3
[»] chr4 (3 HSPs)
chr4 (6-441)||(2271847-2272282)
chr4 (469-550)||(2271763-2271841)
chr4 (387-499)||(32900416-32900528)
[»] scaffold0257 (1 HSPs)
scaffold0257 (23-515)||(22179-22676)
[»] chr7 (2 HSPs)
chr7 (307-485)||(41238400-41238578)
chr7 (178-487)||(23787248-23787557)
[»] chr5 (3 HSPs)
chr5 (387-501)||(12163090-12163204)
chr5 (142-317)||(12162860-12163034)
chr5 (398-477)||(40613957-40614036)
[»] chr3 (2 HSPs)
chr3 (360-477)||(30545748-30545865)
chr3 (441-489)||(9589706-9589754)
[»] chr1 (1 HSPs)
chr1 (453-504)||(27889087-27889138)
[»] chr2 (1 HSPs)
chr2 (386-482)||(10721711-10721807)


Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 6 - 441
Target Start/End: Complemental strand, 2272282 - 2271847
Alignment:
Q  6 gatggacatcatcaggcgtctctatttgtttggcgactactttggaacagatcaactaccaaaaataatttatacaggcgaatcattattcatccggatg 105  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2272282 gatggccatcatcaggcgtctctatttgtttggcgactactttggaacagatcaactaccaaaaataatttatacaggcgaatcattattcatccggatg 2272183  T
Q  106 ctcaattttgtgttgtgggttgccaccaacatgagcctgcagagtatctatttcttcagtgttctttgttaggttccttatggagcggcatttttgtgtg 205  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  2272182 ctcaattttgtgttgcgggttgccaccaacatgagtctgcagagtatctatttcttcagtgttctttgttaggttccttatggagcggcattttcttgtg 2272083  T
Q  206 gatcgattttcctacagtttctcctgagaatttaacagaccatttagctgagtttgggagtttagctagtttatcgaaatcaaagaaatctctccttaca 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |  |||||||||||||||||||||||||||||||    
T  2272082 gatcgattttcctacagtttctcctgagaatttaacagaccatttagctcagtttgggagtttagttgatttatcgaaatcaaagaaatctctccttaca 2271983  T
Q  306 atgatttggtgcgctactacgtggatcatctcgaaggaaaggaacaacataatttttcaaagcagagcctcctccgcctctaagcttctcgataatgtta 405  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||  |||||||||||||||||||||||||||||||    
T  2271982 atgatttggtgcgctactacgtggatcatctcgaagaaaaggaacaacataatttttcaaaagagagaatcctccgcctctaagcttctcgataatgtta 2271883  T
Q  406 aatttctttctttttagtggttaaagacaaattcca 441  Q
    ||||||||||||||||||||||||||||||||||||    
T  2271882 aatttctttctttttagtggttaaagacaaattcca 2271847  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 469 - 550
Target Start/End: Complemental strand, 2271841 - 2271763
Alignment:
Q  469 gatggcttagccctttgttatatatgggcataggttcatagtctcttatctttgatttatgctcttttgtaactgatgatgt 550  Q
    |||| ||||||||||||||||||||||||||||||   | ||||||||| |||| |||||||||||||||||| ||||||||    
T  2271841 gatgacttagccctttgttatatatgggcataggt---tggtctcttatatttggtttatgctcttttgtaaccgatgatgt 2271763  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 499
Target Start/End: Original strand, 32900416 - 32900528
Alignment:
Q  387 aagcttctcgataatgttaaatttctttctttttagtggttaaagacaaattccaaaattattgcttttgattaccataggggatggcttagccctttgt 486  Q
    |||||||| ||||||| |||  ||||||| || | ||||| |||  | || || |||| |||||||||||||||||||||| | |||||||||||||| |    
T  32900416 aagcttcttgataatggtaagcttctttcattctggtggtaaaaagctaactcaaaaaatattgcttttgattaccataggtggtggcttagccctttat 32900515  T
Q  487 tatatatgggcat 499  Q
     || |||||||||    
T  32900516 catgtatgggcat 32900528  T

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Target: scaffold0257 (Bit Score: 118; Significance: 6e-60; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 23 - 515
Target Start/End: Complemental strand, 22676 - 22179
Alignment:
Q  23 gtctctatttgtttggcgactactttggaacagatcaactaccaaaaataatttatacaggcgaatcattattcatccggatgctcaattttgtgttgtg 122  Q
    |||||| ||||||||| |||||||| | || ||||   |||| || || ||||||| || ||||   ||| |||||| |||||||||||||| ||| |||    
T  22676 gtctctgtttgtttggtgactacttcgaaatagattgcctacaaagaacaatttatgcaagcgaggaattcttcatcaggatgctcaattttatgtcgtg 22577  T
Q  123 ggttgccaccaacatgagcctgcagagtatctatttcttcagtgttctttgttaggttccttatggagcggcatttttgtgtggatcgattttcctacag 222  Q
    ||||||  ||||||  || ||||| || |||| ||| | ||  || ||||||| | || |||||||||||   |||| |||||||| |  |||  |||||    
T  22576 ggttgcggccaacaaaagtctgcaaagcatctttttttacaacgtcctttgttcgatttcttatggagcgatgttttggtgtggattggatttattacag 22477  T
Q  223 tttctcctgagaatttaacagaccatttagctgagtttgggagtttagctagtttatcgaaatcaaagaaatctctccttacaatgatttggtgcgctac 322  Q
    ||||||| ||||||  |||| | ||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||| ||| ||||| ||||||||||    
T  22476 tttctcccgagaatgcaacaaatcatttagctcagtttgggagtttagctagtatatcgaaatcaaagagatctctcctcacattgattcggtgcgctac 22377  T
Q  323 tacgtggatcatctcgaaggaaaggaacaacataatttttcaaagcagagcctcctccgcctctaagct-----tctcgataatgttaaatttctttctt 417  Q
    | | |||| ||| | |||||||||||| |||||||||||||||| || || |||||| | ||| | | |     | |  ||||||||||| |||||||||    
T  22376 tgcatggaccatttggaaggaaaggaataacataatttttcaaaacaaaggctcctctgtctcaatgttttttctttttataatgttaaacttctttctt 22277  T
Q  418 tttagtggttaaagacaaattccaaaattattgcttttgattaccataggggatggcttagccctttgttatatatgggcataggttcatagtctctt 515  Q
    ||| |||| ||||  ||||||||||||| ||  ||||||||||||| |  || ||||||||||||||||| | ||| || ||||||| ||||||||||    
T  22276 tttggtggctaaatgcaaattccaaaatcatgacttttgattaccaaatagggtggcttagccctttgttgtgtataggaataggttgatagtctctt 22179  T

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Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 307 - 485
Target Start/End: Complemental strand, 41238578 - 41238400
Alignment:
Q  307 tgatttggtgcgctactacgtggatcatctcgaaggaaaggaacaacataatttttcaaagcagagcctcctccgcctctaagcttctcgataatgttaa 406  Q
    |||||||||| |||  ||||||||  || | |||||||| |||||||||||| ||||||| || |||||||||||  ||||||||||| |||||||||||    
T  41238578 tgatttggtgtgcttgtacgtggactatttggaaggaaatgaacaacataatatttcaaaacaaagcctcctccgtttctaagcttctagataatgttaa 41238479  T
Q  407 atttctttctttttagtggttaaagacaaattccaaaattattgcttttgattaccataggggatggcttagccctttg 485  Q
    | |||||||||||| || ||||||| |||| | ||||||||||| ||||||||| |||||| | ||||  |||||||||    
T  41238478 acttctttctttttggtagttaaaggcaaaatacaaaattattgtttttgattatcataggtggtggccaagccctttg 41238400  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 178 - 487
Target Start/End: Complemental strand, 23787557 - 23787248
Alignment:
Q  178 gttccttatggagcggcatttttgtgtggatcgattttcctacagtttctcctgagaatttaacagaccatttagctgagtttgggagtttagctagttt 277  Q
    |||||||||||| ||| |||||||||||||| || |||| | ||||||||||  | |||||| |||| ||||||  | |||||| ||||||||||||| |    
T  23787557 gttccttatggaacggtatttttgtgtggattgactttctttcagtttctccaaataatttatcagatcatttaattcagtttgagagtttagctagtat 23787458  T
Q  278 atcgaaatcaaagaaatctctccttacaatgatttggtgcgctactacgtggatcatctcgaaggaaaggaacaacataatttttcaaagcagagcctcc 377  Q
    ||||||||||||   ||||||| | ||| ||||||| || |||  ||||||||  || | |||| ||| ||| |  | ||| ||||||| || || ||||    
T  23787457 atcgaaatcaaaacgatctctcttcacattgatttgatgtgcttgtacgtggactatttggaagaaaatgaatagtagaatatttcaaaacaaagtctcc 23787358  T
Q  378 tccgcctctaagcttctcgataatgttaaatttctttctttttagtggttaaagacaaattccaaaattattgcttttgattaccataggggatggctta 477  Q
     |||| || |||||||| |||||| | ||  ||||||||||||  ||||||||| |||| || ||||||| || |||||||||  ||||| |||||| ||    
T  23787357 cccgcttcaaagcttctagataatataaagcttctttctttttgatggttaaaggcaaaatctaaaattactgtttttgattattataggtgatggccta 23787258  T
Q  478 gccctttgtt 487  Q
     | |||||||    
T  23787257 actctttgtt 23787248  T

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Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 387 - 501
Target Start/End: Original strand, 12163090 - 12163204
Alignment:
Q  387 aagcttctcgataatgttaaatttctttctttttagtggttaaagacaaattccaaaattattgcttttgattaccataggggatggcttagccctttgt 486  Q
    |||||| | |||||||||||  |||||||||||| ||||||||||||||||| ||||||||||||||||||||||  |||| | |||||||| | |||||    
T  12163090 aagcttattgataatgttaagcttctttctttttggtggttaaagacaaatttcaaaattattgcttttgattactgtaggtggtggcttagtcttttgt 12163189  T
Q  487 tatatatgggcatag 501  Q
    ||| |||||||||||    
T  12163190 tatgtatgggcatag 12163204  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 142 - 317
Target Start/End: Original strand, 12162860 - 12163034
Alignment:
Q  142 ctgcagagtatctatttcttcagtgttctttgttaggttccttatggagcggcatttttgtgtggatcgattttcctacagtttctcctgagaatttaac 241  Q
    |||||||| |||| ||||| ||||||  |||||| ||||||||||||||||   |||| |||||||||   |||| |||| | ||| | |||||| ||||    
T  12162860 ctgcagagcatctttttctacagtgtcttttgtttggttccttatggagcgatgttttggtgtggatcagatttcttacaatatcttcggagaatgtaac 12162959  T
Q  242 agaccatttagctgagtttgggagtttagctagtttatcgaaatcaaagaaatctctccttacaatgatttggtgc 317  Q
    ||| ||| || || | |||| |||||||||| || || | ||||| |||| ||||||||| ||| |||||| ||||    
T  12162960 agatcatctaactcaatttgagagtttagctggtata-caaaatctaagagatctctcctcacattgatttagtgc 12163034  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 477
Target Start/End: Original strand, 40613957 - 40614036
Alignment:
Q  398 taatgttaaatttctttctttttagtggttaaagacaaattccaaaattattgcttttgattaccataggggatggctta 477  Q
    ||||||||| | ||||||||||| |||||||||| |||| |  |||||||||| | ||||||| |||||| | |||||||    
T  40613957 taatgttaagtgtctttctttttggtggttaaaggcaaaatttaaaattattgttcttgattatcataggtggtggctta 40614036  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 360 - 477
Target Start/End: Complemental strand, 30545865 - 30545748
Alignment:
Q  360 tttcaaagcagagcctcctccgcctctaagcttctcgataatgttaaatttctttctttttagtggttaaagacaaattccaaaattattgcttttgatt 459  Q
    ||||||| || ||||||||||  ||| |||| ||| |||||||||||  || ||||||||| ||||||||||  ||| || |||||||||| ||||||||    
T  30545865 tttcaaaacaaagcctcctccatctccaagcgtctagataatgttaatcttatttctttttggtggttaaagctaaaatctaaaattattgtttttgatt 30545766  T
Q  460 accataggggatggctta 477  Q
    | |||||| | |||||||    
T  30545765 atcataggtggtggctta 30545748  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 489
Target Start/End: Complemental strand, 9589754 - 9589706
Alignment:
Q  441 aaaattattgcttttgattaccataggggatggcttagccctttgttat 489  Q
    ||||||||| ||||||||||||||||| | || ||||||||||||||||    
T  9589754 aaaattattccttttgattaccataggtggtgtcttagccctttgttat 9589706  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 504
Target Start/End: Complemental strand, 27889138 - 27889087
Alignment:
Q  453 tttgattaccataggggatggcttagccctttgttatatatgggcataggtt 504  Q
    ||||||||||||||| |||| ||||||||||| || | ||||||||||||||    
T  27889138 tttgattaccataggtgatgacttagccctttattgtgtatgggcataggtt 27889087  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 386 - 482
Target Start/End: Original strand, 10721711 - 10721807
Alignment:
Q  386 taagcttctcgataatgttaaatttctttctttttagtggttaaagacaaattccaaaattattgcttttgattaccataggggatggcttagccct 482  Q
    ||||||| | ||||||||||| || |||||||| | ||||||||||||||| | || ||   |||||| ||| || |||||| | ||||||||||||    
T  10721711 taagcttttagataatgttaagttcctttctttctggtggttaaagacaaaattcacaaaccttgcttctgactatcataggtggtggcttagccct 10721807  T

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