View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5742_high_34 (Length: 237)

Name: NF5742_high_34
Description: NF5742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5742_high_34
NF5742_high_34
[»] chr3 (2 HSPs)
chr3 (1-229)||(24638997-24639225)
chr3 (5-229)||(48100115-48100340)
[»] chr1 (2 HSPs)
chr1 (5-229)||(44386707-44386932)
chr1 (5-229)||(9932833-9933058)
[»] chr6 (2 HSPs)
chr6 (11-226)||(21877413-21877629)
chr6 (5-62)||(22208149-22208206)
[»] chr8 (2 HSPs)
chr8 (5-62)||(23583548-23583605)
chr8 (110-229)||(23583380-23583500)


Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 24638997 - 24639225
Alignment:
Q  1 tgcgtggtgtcaactggagtagcagaaggtttgcatgaggccatgcctgctcgagcaataatgccactagcataaatactttgactgagtaagaacttgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24638997 tgcgtggtgtcaactggagtagcagaaggtttgcatgaggccatgcctgctcgagcaataatgccactagcataaatactttgactgagtaagaacttgc 24639096  T
Q  101 gagcatgtctggtcacaacaatgcccaagaagtaactcagtggaccataatccttcatagctaactcagaacaaggagtgtcatgatggatttctgaaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24639097 gagcatgtctggtcacaacaatgcccaagaagtaactcagtggaccataatccttcatagctaactcagaacaaggagtttcatgatggatttctgaaga 24639196  T
Q  201 tcgtgagaggaggtgatgaggatgatgtc 229  Q
    |||||||||||||||||||||||||||||    
T  24639197 tcgtgagaggaggtgatgaggatgatgtc 24639225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 48100115 - 48100340
Alignment:
Q  5 tggtgtcaactggagtagcagaaggtttgcatgaggccatgcctgctcgagcaataatgccactagcataaatactttgactgagtaagaacttgcgagc 104  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||  ||| | |||| ||||| ||||| || || | |   | | |    
T  48100115 tggtgtcaactggagtagcagaaggtttgcacgaggccatgcctgcgcgggcaatgatttcaccaacatagatactctgactaaggaaaatcccaccaac 48100214  T
Q  105 atgtctggtcacaacaatgcccaagaagtaactcagtggaccataatccttcatagctaactcagaa-caaggagtgtcatgatggatttctgaagatcg 203  Q
    |||||| |||||  |||||||||| || ||||||||||||||   |||||||||||| ||||||||  ||||||||| ||||||||||||  |||| ||     
T  48100215 atgtctagtcacggcaatgcccaaaaaataactcagtggacccagatccttcatagcaaactcagaggcaaggagtgccatgatggattttcgaagctca 48100314  T
Q  204 tgagaggaggtgatgaggatgatgtc 229  Q
    || |||||||||||||||||||||||    
T  48100315 tgggaggaggtgatgaggatgatgtc 48100340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 229
Target Start/End: Complemental strand, 44386932 - 44386707
Alignment:
Q  5 tggtgtcaactggagtagcagaaggtttgcatgaggccatgcctgctcgagcaataatgccactagcataaatactttgactgagtaagaacttgcgagc 104  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||  |||| || ||||| ||||     | | |    
T  44386932 tggtgtcaactggagtagcagaaggtttgcacgaggccatgcctgctcgagcaataatatcactagcataggtactctggctgaggaagagtccaccatc 44386833  T
Q  105 atgtctggtcacaacaatgcccaagaagtaactcagtggaccataatccttcatagctaactcaga-acaaggagtgtcatgatggatttctgaagatcg 203  Q
    |||| | |||||   ||||||||| || ||||||||||||||  ||||||| || || ||||||||  ||||||||||||||||||||||| |||||||     
T  44386832 atgtttagtcacggaaatgcccaaaaaataactcagtggacccaaatccttaatggcaaactcagatgcaaggagtgtcatgatggatttccgaagatca 44386733  T
Q  204 tgagaggaggtgatgaggatgatgtc 229  Q
    || ||||| |||||||||||||||||    
T  44386732 tgggaggatgtgatgaggatgatgtc 44386707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 9932833 - 9933058
Alignment:
Q  5 tggtgtcaactggagtagcagaaggtttgcatgaggccatgcctgctcgagcaataatgccactagcataaatactttgactgagtaagaacttgcgagc 104  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||  ||| |||||| ||||| ||||| || || | |   | | |    
T  9932833 tggtgtcaactggagtagcagaaggtttgcacgaggccatgcctgcgcgggcaatgatttcaccagcatagatactctgactaaggaaaatcccaccaac 9932932  T
Q  105 atgtctggtcacaacaatgcccaagaagtaactcagtggaccataatccttcatagctaactcagaa-caaggagtgtcatgatggatttctgaagatcg 203  Q
    |||||| |||||  |||||||||| || ||||||||||||||   |||||||||||| ||||||||  ||||||||| ||||||||||||  |||| ||     
T  9932933 atgtctagtcacggcaatgcccaaaaaataactcagtggacccagatccttcatagcaaactcagaggcaaggagtgccatgatggattttcgaagctca 9933032  T
Q  204 tgagaggaggtgatgaggatgatgtc 229  Q
    || |||||||||||||||||||||||    
T  9933033 tgggaggaggtgatgaggatgatgtc 9933058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 21877413 - 21877629
Alignment:
Q  11 caactggagtagcagaaggtttgcatgaggccatgcctgctcgagcaataatgccactagcataaatactttgactgagtaagaacttgcgagcatgtct 110  Q
    |||||||||||||||||||||||||  |||||||| || |||||||||||| | |||||||||||||||| |||||  | || | | | | |||||||||    
T  21877413 caactggagtagcagaaggtttgcacaaggccatgtctactcgagcaataaagtcactagcataaatactctgactagggaaaatcctaccagcatgtct 21877512  T
Q  111 ggtcacaacaatgcccaagaagtaactcagtggaccataatccttcatagctaactcagaa-caaggagtgtcatgatggatttctgaagatcgtgagag 209  Q
    |||||| | | |||||| ||||||||||| ||||||  ||||||||||||  ||||||||  |||| |||| |||||||||||| |||||||| || |||    
T  21877513 ggtcacgaaagtgcccaggaagtaactcaatggacccaaatccttcatagtaaactcagaggcaagtagtgccatgatggatttatgaagatcatgggag 21877612  T
Q  210 gaggtgatgaggatgat 226  Q
    |||||||||||||||||    
T  21877613 gaggtgatgaggatgat 21877629  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 22208149 - 22208206
Alignment:
Q  5 tggtgtcaactggagtagcagaaggtttgcatgaggccatgcctgctcgagcaataat 62  Q
    ||||||||| |||||||| |||||||||||| ||||| |||||||  || ||||||||    
T  22208149 tggtgtcaattggagtagtagaaggtttgcacgaggcgatgcctgtgcgggcaataat 22208206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 23583605 - 23583548
Alignment:
Q  5 tggtgtcaactggagtagcagaaggtttgcatgaggccatgcctgctcgagcaataat 62  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||    
T  23583605 tggtgtcaactggagtagtagaaggtttgcacgaggccatgcctgctcgggcaataat 23583548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 229
Target Start/End: Complemental strand, 23583500 - 23583380
Alignment:
Q  110 tggtcacaacaatgcccaagaagtaactcagtggaccataatccttcatagctaactcagaac-aaggagtgtcatgatggatttctgaagatcgtgaga 208  Q
    |||||||  ||||||| || || |||| || ||||||  ||||||||||||| ||||||||   |||||||| |||||| |||||  ||||||  || ||    
T  23583500 tggtcacggcaatgccaaaaaaataacacaatggacccaaatccttcatagcaaactcagaggtaaggagtgccatgatagattttcgaagataatggga 23583401  T
Q  209 ggaggtgatgaggatgatgtc 229  Q
    ||||||||| |||||||||||    
T  23583400 ggaggtgataaggatgatgtc 23583380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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