View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5742_high_39 (Length: 232)
Name: NF5742_high_39
Description: NF5742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5742_high_39 |
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| [»] scaffold0689 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 218
Target Start/End: Original strand, 9231760 - 9231966
Alignment:
| Q |
12 |
acatcatctgtgactttaatttgagatactcatggttcttcccttctgaatcatccattgcagtaagaacatacttaagaaaatcataattacaggacct |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
9231760 |
acatcatctgtgactttaatttgagatactcatggttcttcccttctgaatcatcaattccagtaagaacatacttaagaaaatcataattacaggacct |
9231859 |
T |
|
| Q |
112 |
taccgcatattgattattaaagaattgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcaggggattccgccaattc |
211 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
9231860 |
taccgcatattgattattaaagaatcgaagtcgatgtgcttttaaaaaagaggatatcaacgaacttctatgaaatggtttcagcggattccgccaattc |
9231959 |
T |
|
| Q |
212 |
tcttgat |
218 |
Q |
| |
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||||||| |
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|
| T |
9231960 |
tcttgat |
9231966 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 218
Target Start/End: Complemental strand, 18351006 - 18350800
Alignment:
| Q |
12 |
acatcatctgtgactttaatttgagatactcatggttcttcccttctgaatcatccattgcagtaagaacatacttaagaaaatcataattacaggacct |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
18351006 |
acatcatctgtgactttaatttgagatactcatggttcttcccttctgaatcatcaattccagtaagaacatacttaagaaaatcataattacaggacct |
18350907 |
T |
|
| Q |
112 |
taccgcatattgattattaaagaattgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcaggggattccgccaattc |
211 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
18350906 |
taccgcatattgattattaaagaatcgaagtcgatgtgcttttaaaaaagaggatatcaacgaacttctatgaaatggtttcagcggattccgccaattc |
18350807 |
T |
|
| Q |
212 |
tcttgat |
218 |
Q |
| |
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||||||| |
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| T |
18350806 |
tcttgat |
18350800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 12 - 218
Target Start/End: Complemental strand, 16902408 - 16902202
Alignment:
| Q |
12 |
acatcatctgtgactttaatttgagatactcatggttcttcccttctgaatcatccattgcagtaagaacatacttaagaaaatcataattacaggacct |
111 |
Q |
| |
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||||||||||||| | ||||||||||||||| |||||| ||||||||||||||| || || |||||| ||||||| ||||||||||||||||||||| |
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| T |
16902408 |
acatcatctgtgagtataatttgagatactcggggttctccccttctgaatcatcacttctaggaagaacctacttaaaaaaatcataattacaggacct |
16902309 |
T |
|
| Q |
112 |
taccgcatattgattattaaagaattgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcaggggattccgccaattc |
211 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
16902308 |
caccgcttattgattattaaagaatcgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaggtggtttcagcagattccgccaattc |
16902209 |
T |
|
| Q |
212 |
tcttgat |
218 |
Q |
| |
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||||||| |
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| T |
16902208 |
tcttgat |
16902202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 12 - 218
Target Start/End: Complemental strand, 2914212 - 2914006
Alignment:
| Q |
12 |
acatcatctgtgactttaatttgagatactcatggttcttcccttctgaatcatccattgcagtaagaacatacttaagaaaatcataattacaggacct |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
2914212 |
acatcatctgtgactttaatttgagatactcatggttcttcccttatgaatcattaattccagtaaaaacatacttaagaaaatcataattacaggacct |
2914113 |
T |
|
| Q |
112 |
taccgcatattgattattaaagaattgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcaggggattccgccaattc |
211 |
Q |
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|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2914112 |
taccgcatattgattattaaagaatcgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcaggggattccgccaattc |
2914013 |
T |
|
| Q |
212 |
tcttgat |
218 |
Q |
| |
|
||||||| |
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|
| T |
2914012 |
tcttgat |
2914006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 12 - 218
Target Start/End: Original strand, 17650033 - 17650239
Alignment:
| Q |
12 |
acatcatctgtgactttaatttgagatactcatggttcttcccttctgaatcatccattgcagtaagaacatacttaagaaaatcataattacaggacct |
111 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||| ||||| |
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| T |
17650033 |
acatcatctgtgactttaatctgagatactcatggttcttcccttctgaatcatcaattccagtaagaacatacttaagaaaatcatagttacatgacct |
17650132 |
T |
|
| Q |
112 |
taccgcatattgattattaaagaattgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcaggggattccgccaattc |
211 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17650133 |
taccgcatattgattattaaagaatcgaagttgatgtgcttttagaaaagaggatatcaatgaacttctatgaaatggtttcaggggattccgccaattc |
17650232 |
T |
|
| Q |
212 |
tcttgat |
218 |
Q |
| |
|
||||||| |
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| T |
17650233 |
tcttgat |
17650239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 20635581 - 20635723
Alignment:
| Q |
24 |
actttaatttgagatactcatggttcttcccttctgaatcatccattgcagtaagaacatacttaagaaaatcataattacaggaccttaccgcatattg |
123 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
20635581 |
actttaatttgagatactcatggttcttcccttctgaatcatcaatttcagtaagaacatatttaagaaaatcataattacatgaccttaccgcatattg |
20635680 |
T |
|
| Q |
124 |
attattaaagaattgaagtcgatgtgcttttaaaaaagaggat |
166 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20635681 |
attattaaagaatcgaagtcgatgtgcttttaaaaaagaggat |
20635723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 12 - 218
Target Start/End: Complemental strand, 6488695 - 6488489
Alignment:
| Q |
12 |
acatcatctgtgactttaatttgagatactcatggttcttcccttctgaatcatccattgcagtaagaacatacttaagaaaatcataattacaggacct |
111 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
6488695 |
acatcatatgtgactttaatttgagatactcatggttcttccattctgaatcatcaattctagtaagaacatacttaagaaaatcataagtacaggacct |
6488596 |
T |
|
| Q |
112 |
taccgcatattgattattaaagaattgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcaggggattccgccaattc |
211 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6488595 |
taccgcatattgattattaaagaatcgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcaggggattccgccaattt |
6488496 |
T |
|
| Q |
212 |
tcttgat |
218 |
Q |
| |
|
||||||| |
|
|
| T |
6488495 |
tcttgat |
6488489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0689 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0689
Description:
Target: scaffold0689; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 1096 - 1001
Alignment:
| Q |
123 |
gattattaaagaattgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcaggggattccgccaattctcttgat |
218 |
Q |
| |
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||||||| |||||| ||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||| |
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| T |
1096 |
gattattcaagaatcgaagtcgatttgctttataaaaagaagatatcaatgaacttctatgaaatggtttcacgggattcagccaattgtcttgat |
1001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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