View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5742_high_47 (Length: 204)
Name: NF5742_high_47
Description: NF5742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5742_high_47 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 42529556 - 42529436
Alignment:
| Q |
9 |
acatcatcaaattttacaacaaaagactctgactgaaaaagatcaaaaccggcatccggcttggccctccttatgtattcaatacttgttgatctgtatt |
108 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42529556 |
acatcatcaaattttacaacaaaagaatctgactgaaaaagatcaaaaccggcatccggcttggccctccttgtgtattcaatacttgttgatctgtatt |
42529457 |
T |
|
| Q |
109 |
tccaagaactgagattcccat |
129 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
42529456 |
tccaagaactgagattcccat |
42529436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 42535278 - 42535179
Alignment:
| Q |
9 |
acatcatcaaattttacaacaaaagactctgactgaaaaagatcaaaaccggcatccggcttggccctccttatgtattcaatacttgttgatctgtatt |
108 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||| |
|
|
| T |
42535278 |
acatcatcaaatttcacaacaaaagactctgactgaaaaagatcaaaaccggcatccggcttggccctccttatgtcttcaatgcgtgttgatctgtatt |
42535179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 42535149 - 42535104
Alignment:
| Q |
147 |
gtaataaggcagtcattgttcttgttgtagaagaggctcttgatga |
192 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
42535149 |
gtaataagtgagtcattgttcttgttgtagaagagtctcctgatga |
42535104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 184
Target Start/End: Complemental strand, 27821993 - 27821896
Alignment:
| Q |
87 |
tcaatacttgttgatctgtatttccaagaactgagattcccatgaccgtaatcagacagcgtaataaggcagtcattgttcttgttgtagaagaggct |
184 |
Q |
| |
|
||||| |||||||||||| | ||| ||||||||| |||| || | | ||| |||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27821993 |
tcaatccttgttgatctgcacttcaaagaactgaaattctcagaagcataaacagacactgtaataagtgagtcattgttcttgttgtagaagaggct |
27821896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 27822138 - 27822082
Alignment:
| Q |
30 |
aaagactctgactgaaaaagatcaaaaccggcatccggcttggccctccttatgtat |
86 |
Q |
| |
|
|||||||| ||||| |||||| |||||| |||||||||||||||||| |||||||| |
|
|
| T |
27822138 |
aaagactcggactggaaaagaggaaaaccagcatccggcttggccctctttatgtat |
27822082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University