View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5742_high_5 (Length: 446)
Name: NF5742_high_5
Description: NF5742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5742_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 10 - 435
Target Start/End: Complemental strand, 45482556 - 45482127
Alignment:
| Q |
10 |
catcatcaatcgcttgagatactttgtagggtgtagagctggaagaaaagcctctttcaaaagaatctcctgtcagttacttattatgtact----atgc |
105 |
Q |
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| T |
45482556 |
catcatcaatcgcttgagatactttgtagggtgtagagctggaagaaaagcctctttcaaaagaatctcctgtcagttacttattatgtacttcaaatgc |
45482457 |
T |
|
| Q |
106 |
tgttggaattactcacaccgacaaattaataccacaacatttgcccactcctgcccttttgtaatgcttttgagttaaccattttatttttgcccagaag |
205 |
Q |
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| T |
45482456 |
tgttggaattactcacaccgacagattaataccacaacatttgcccactcctgcccttttgtaatgcttttgagttaaccattttatttttgcccagaag |
45482357 |
T |
|
| Q |
206 |
gcattgtgaagtgattcttgagaaaaaggatctagggtatgaaccctcaacctgtacgaatgcaagcacctcattctagtattagttacagaaaaaattg |
305 |
Q |
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| T |
45482356 |
gcattgtgaagtgattcttgagaaaaaggatctagggtatgaaccctcaacctgtacgaatgcaagcacctcattctagtattagttacagaaaaaattg |
45482257 |
T |
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| Q |
306 |
tgatctctgtgcatatgtagtactaaagtacctatcaaccatccagtatgcacaaagaagttggcaggtttagtgccaatgaactagttcaagttgctta |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45482256 |
tgatctctgtgcatatgtagtactaaagtacctatcaaccatccagtatgcacaaagaagttggcaggtttagtgccaatgaactagttcaagttgctta |
45482157 |
T |
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| Q |
406 |
aattaccccgatactgcccagtgtttgatg |
435 |
Q |
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| T |
45482156 |
aattaccccgatactgcccagtgtttgatg |
45482127 |
T |
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