View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5742_high_8 (Length: 385)
Name: NF5742_high_8
Description: NF5742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5742_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 2906373 - 2905996
Alignment:
| Q |
1 |
attatggtaatactggtgcaatttggacaccaaaatctccacaaacagctgctactgctgttagaagccctcgtggtacaaaatccccttctcattcccc |
100 |
Q |
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| T |
2906373 |
attatggtaatactggtgcaatttggacaccaaaatctccacaaacagctgctactgctgttagaagccctcgtggtacaaaatccccttctcattcccc |
2906274 |
T |
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| Q |
101 |
tattggtggtggcggtggagagcgtcgcgttcaattcggcacagttgtggaggtgggagatgaatttggtggcggcagcgaggaagaacaccaccataat |
200 |
Q |
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| T |
2906273 |
tgttggtggcggcggtggagagcgtcgtgttcaattcggcacagttgtggaggtgggagatgaatttggtggcggcagcgaggaagaacaccaccataat |
2906174 |
T |
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| Q |
201 |
gatgattttgttgagcatcatgagtccaaaaaagaacaagacataccacaaacattgataacggttgaacattagtctagataaagtgaaattccgttgt |
300 |
Q |
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| T |
2906173 |
gatgattttgttgagcatcatgagtccaaaaaagaacaagacataccacaaacattgataacggttgaacactagtctagataaagtgaaattccgttgt |
2906074 |
T |
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| Q |
301 |
aaatgtcttaatggattgaatgcacatggtgatatgtatatgatattggagtctaatacacacaagtgatgatgatgt |
378 |
Q |
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| T |
2906073 |
aaatgtcttaatggattgaatgcacatggtgatatgtatatgatattggagtctaatacacacaagtgatgatgatgt |
2905996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 2854345 - 2853968
Alignment:
| Q |
1 |
attatggtaatactggtgcaatttggacaccaaaatctccacaaacagctgctactgctgttagaagccctcgtggtacaaaatccccttctcattcccc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2854345 |
attatggtaatactggtgcaatttggacaccaaaatctccacaaacagctgctactgctgttagaagccctcgtggtacaaaatccccttctcattcccc |
2854246 |
T |
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| Q |
101 |
tattggtggtggcggtggagagcgtcgcgttcaattcggcacagttgtggaggtgggagatgaatttggtggcggcagcgaggaagaacaccaccataat |
200 |
Q |
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| ||||||||||||||| ||| |||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2854245 |
tgttggtggtggcggtgaggagtgtcgggttcaatttggcacagttgtggagatgggagatgaatttggtggcggcagcgaggaagaacaccaccataat |
2854146 |
T |
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| Q |
201 |
gatgattttgttgagcatcatgagtccaaaaaagaacaagacataccacaaacattgataacggttgaacattagtctagataaagtgaaattccgttgt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2854145 |
gatgattttgttgagcatcatgagtccaaaaaagaacaagacataccacaaacattgataacggttgaacactagtctagataaagtgaaattccgttgt |
2854046 |
T |
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| Q |
301 |
aaatgtcttaatggattgaatgcacatggtgatatgtatatgatattggagtctaatacacacaagtgatgatgatgt |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2854045 |
aaatgtcttaatggattgaatgcacatggtgatatgtatatgatattggagtctaatacacacaagtgatgatgatgt |
2853968 |
T |
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