View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5742_high_9 (Length: 378)
Name: NF5742_high_9
Description: NF5742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5742_high_9 |
 | |
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| [»] scaffold1079 (1 HSPs) |
| | |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 16899597 - 16899233
Alignment:
| Q |
1 |
atagatttatgaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcaggatcaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16899597 |
atagatttatgaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcaggatcaac |
16899498 |
T |
|
| Q |
101 |
taggacagaaataaaacattgggtcgaactcttttttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaatgcgacct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
16899497 |
taggacagaaataaaacattgggtcgaactcttttttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaatggtagaagaatgcgacct |
16899398 |
T |
|
| Q |
201 |
attatgggacatagaccgcattacaaacgtatgatcattacgcttcaaccgggttattctattccacctcttagaaaagaacttaactaaaaatacactt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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|
| T |
16899397 |
attatgggacatagaccgcattacaaacgtatgatcattacgcttcaaccgggttattctattctacctcttagaaaagaacttaaataaaaatacactt |
16899298 |
T |
|
| Q |
301 |
aatagcatggcgatacatttatacaaaacttctatcccgagcacccgcacacgaaatcgtttgat |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16899297 |
aatagcatggcgatacatttatacaaaacttctatcccgagcacccgcacacgaaatcgtttgat |
16899233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 18348112 - 18347748
Alignment:
| Q |
1 |
atagatttatgaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcaggatcaac |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18348112 |
atagatttatgaatggaataaaaaatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcaggatcaac |
18348013 |
T |
|
| Q |
101 |
taggacagaaataaaacattgggtcgaactcttttttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaatgcgacct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18348012 |
taggacagaaataaaacattgggtcgaactcttttttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaatgcgacct |
18347913 |
T |
|
| Q |
201 |
attatgggacatagaccgcattacaaacgtatgatcattacgcttcaaccgggttattctattccacctcttagaaaagaacttaactaaaaatacactt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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|
| T |
18347912 |
attatgggacatagaccgcattacaaacgtatgatcattacgcttcaaccgggttattctattctacctcttagaaaagaacttaaataaaaatacactt |
18347813 |
T |
|
| Q |
301 |
aatagcatggcgatacatttatacaaaacttctatcccgagcacccgcacacgaaatcgtttgat |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18347812 |
aatagcatggcgatacatttatacaaaacttctatcccgagcacccgcacacgaaatcgtttgat |
18347748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 13236379 - 13236743
Alignment:
| Q |
1 |
atagatttatgaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcaggatcaac |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13236379 |
atagatttatgaatggaataaaaaatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcaggatcaac |
13236478 |
T |
|
| Q |
101 |
taggacagaaataaaacattgggtcgaactcttttttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaatgcgacct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13236479 |
taggacagaaataaaacattgggtcgaactcttttttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaatgcgacct |
13236578 |
T |
|
| Q |
201 |
attatgggacatagaccgcattacaaacgtatgatcattacgcttcaaccgggttattctattccacctcttagaaaagaacttaactaaaaatacactt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13236579 |
attatgggacatagaccgcattacaaacgtatgatcattacgcttcaaccgggttattctattctacctcttagaaaagaacttaaataaaaatacactt |
13236678 |
T |
|
| Q |
301 |
aatagcatggcgatacatttatacaaaacttctatcccgagcacccgcacacgaaatcgtttgat |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13236679 |
aatagcatggcgatacatttatacaaaacttctatcccgagcacccgcacacgaaatcgtttgat |
13236743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1079 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: scaffold1079
Description:
Target: scaffold1079; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 604 - 254
Alignment:
| Q |
1 |
atagatttatgaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcaggatcaac |
100 |
Q |
| |
|
||||||||||| ||||||| |||||| | || ||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
604 |
atagatttatggatggaatcaaatatatagtagttacagacaaaagtattcggttagtggtgaaaaatcaatatacttctaatgtcgaatcaggatcaac |
505 |
T |
|
| Q |
101 |
taggacagaaataaaacattgggtcgaactcttttttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaatgcgacct |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
504 |
taggacagaaataaagcattgggtcgaactcttctttggtgtcaaggtaatagctatgaatagtcatcgactcccccgaaagggtagaagaatgggacct |
405 |
T |
|
| Q |
201 |
attatgggacatagaccgcattacaaacgtatgatcattacgcttcaaccgggttattctattccacctctta----gaaaagaacttaactaaaaatac |
296 |
Q |
| |
|
||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||| |
|
|
| T |
404 |
attatgggacatacaatgcattacaggcgtatgatcattacgcttcaaccgggttattctattccacctcttacaacgaaaagaacttaaatcaaaat-- |
307 |
T |
|
| Q |
297 |
acttaatagcatggcgatacatttatacaaaacttctatcccgagcacccgca |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |||| |||| |
|
|
| T |
306 |
acttaatagcatggcgatacatttatacaaaacttctaccccgggcacacgca |
254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 10404156 - 10403965
Alignment:
| Q |
1 |
atagatttatgaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaat----caggat |
96 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
10404156 |
atagatttatgaatggaataaaatatataatatttacaaacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaattaatcagtat |
10404057 |
T |
|
| Q |
97 |
caactaggacagaaataaaacattgggtcgaactcttttttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtaga |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10404056 |
caactaggacagaaataaaacattgggtcgaactcttatttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtaga |
10403965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 6352354 - 6352464
Alignment:
| Q |
1 |
atagatttatgaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcaggatcaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6352354 |
atagatttatgaatggaataaaatatgtaatatttacagacaaaagtattc-attattgggaaaaaatcaatatacttttaatgtcgaat-aggatcaac |
6352451 |
T |
|
| Q |
101 |
taggacagaaata |
113 |
Q |
| |
|
||||||||||||| |
|
|
| T |
6352452 |
taggacagaaata |
6352464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 42203291 - 42203482
Alignment:
| Q |
1 |
atagatttatgaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcaggatcaac |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
42203291 |
atagatttatgaatggaataatatatgcaatatttacagacaaaagtgttcggttattgt-aaaaattcaatatacttttaatgtcgaatcaggatcaac |
42203389 |
T |
|
| Q |
101 |
taggacagaaataaaacattgggtcgaactcttttttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaat |
193 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
42203390 |
taggatagaaataaaacattgggtcgaactcttctttgatgtcaaggtaatagctatgaatagtcatcgactcccaataaaggataaaagaat |
42203482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 4 - 267
Target Start/End: Original strand, 197865 - 198128
Alignment:
| Q |
4 |
gatttatgaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcaggatcaactag |
103 |
Q |
| |
|
|||||||| ||||||| ||||| ||| |||||||||| |||||| |||| ||||||||||| |||||||||||||||||||||||||| |||| |||| |
|
|
| T |
197865 |
gatttatggatggaatcaaatacgcagtatttacagaaaaaagtcttcgtttattgggaaagaatcaatatacttttaatgtcgaatcgggattcactaa |
197964 |
T |
|
| Q |
104 |
gacagaaataaaacattgggtcgaactcttttttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaatgcgacctatt |
203 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||| ||||| ||||| ||||||| |||||||| || ||| ||||||||||| |||||||| |
|
|
| T |
197965 |
gacagaaataaagcattgggtcgaactcttctttggtgttaaggtggtagctgtgaatagccatcgactacctggaaaaggtagaagaataggacctatt |
198064 |
T |
|
| Q |
204 |
atgggacatagaccgcattacaaacgtatgatcattacgcttcaaccgggttattctattccac |
267 |
Q |
| |
|
|||| |||| | |||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
198065 |
ctgggccatacaatgcattacagacgtatgatcattacccttcaaccgggttattctattccac |
198128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 12 - 267
Target Start/End: Original strand, 256308 - 256562
Alignment:
| Q |
12 |
aatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcaggatcaactaggacagaaa |
111 |
Q |
| |
|
|||||||| ||||| ||| |||||||||| |||||| |||| ||||||||||| |||||||||||||||||||||||||| |||| |||| |||||||| |
|
|
| T |
256308 |
aatggaatcaaatacgcagtatttacagaaaaaagtcttcgtttattgggaaagaatcaatatacttttaatgtcgaatcgggattcactaagacagaaa |
256407 |
T |
|
| Q |
112 |
taaaacattgggtcgaactcttttttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaatgcgacctattatgggaca |
211 |
Q |
| |
|
|||| |||||| || ||||||| ||||| | ||||| ||||| ||||||| |||||||| || ||| ||||||||||| |||||||| |||| | |
|
|
| T |
256408 |
taaagcattggttcaaactcttctttgg-attaaggtggtagctgtgaatagccatcgactacctggaaaaggtagaagaataggacctattctgggccg |
256506 |
T |
|
| Q |
212 |
tagaccgcattacaaacgtatgatcattacgcttcaaccgggttattctattccac |
267 |
Q |
| |
|
|| | |||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
256507 |
tacaatgcattacagacgtatgatcattacccttcaaccgggttattctattccac |
256562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 40230975 - 40231035
Alignment:
| Q |
33 |
tttacagacaaaagtattcggttattggg-aaaaaatcaatatacttttaatgtcgaatca |
92 |
Q |
| |
|
|||| ||||||||||||| |||||||||| |||||||||||| |||||||| ||||||||| |
|
|
| T |
40230975 |
tttatagacaaaagtatttggttattgggaaaaaaatcaatacacttttaacgtcgaatca |
40231035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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