View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5742_low_10 (Length: 400)
Name: NF5742_low_10
Description: NF5742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5742_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 868434 - 868816
Alignment:
| Q |
1 |
ttaaaatttcaaaattgtaggactttgaaatccacaatgccataattttgccaacggtgttagtggattttcgtttagttannnnnnnnnnnnn----ca |
96 |
Q |
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| T |
868434 |
ttaaaatttcaaaattgtaggactttgaaatccacaatgccataattttgccaacggtgttagtggattttcgtttagttattttttttatgggttttca |
868533 |
T |
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| Q |
97 |
tatgagatgatcgtgcgagtttaagatggagaagactataaacatagagaatttatagatgtatttatacttatctctcttcaataacactagtgatgtt |
196 |
Q |
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| T |
868534 |
tatgagatgatcgtgcgagtttaagatggagaagactataaacatagagaatttatagatgtatttatacttatctctcttcaataacactagtgatgtt |
868633 |
T |
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| Q |
197 |
tgaactcgaacgaccatatcgttacaaattcatcacttaattatttagtgaccgatttctttacatatttcacacatcttgtatctcgaag--nnnnnnn |
294 |
Q |
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| T |
868634 |
tgaactcgaacga-catatcgttacaaattcatcactgaattatttagtgaccgatttctttacatatttcgcacattttgtatctcgaagttttttttt |
868732 |
T |
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| Q |
295 |
nctttcttcaaagagactaatgtttgtgattcacgcattttaaacattgaaaaatgaagaatctgagattagaacttcggctcc |
378 |
Q |
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| T |
868733 |
tctttcttcaaagagactaatgtttgtgattcacacattttaaacattgaaaaatgaataatttgagattagaacttcggctcc |
868816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 110 - 282
Target Start/End: Original strand, 840483 - 840656
Alignment:
| Q |
110 |
tgcgagtttaagatggagaagactataaacatagagaatttatagatgtatttatacttatctctcttcaataacactagtgatgtttgaactcgaacga |
209 |
Q |
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| T |
840483 |
tgcgagtttaaggtagagaagactttagacatagacgatttacaaatatatttatatttatctctttttaataatactaacgatgtttgaactcggacga |
840582 |
T |
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| Q |
210 |
ccatatcgttacaaattcat-cacttaattatttagtgaccga-tttctttacatatttcacacatcttgtatct |
282 |
Q |
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| T |
840583 |
ccatatc-ttacaaattcgtccactaaatgatttagtggccaattttcttttaatatttggcacatcttgtatct |
840656 |
T |
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