View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5742_low_13 (Length: 358)

Name: NF5742_low_13
Description: NF5742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5742_low_13
NF5742_low_13
[»] chr5 (23 HSPs)
chr5 (1-350)||(30748859-30749208)
chr5 (1-350)||(30677706-30678055)
chr5 (1-346)||(29871402-29871747)
chr5 (1-346)||(30482620-30482965)
chr5 (1-341)||(30242919-30243259)
chr5 (1-350)||(30713960-30714321)
chr5 (1-350)||(30435038-30435387)
chr5 (1-346)||(30339067-30339412)
chr5 (1-346)||(30059573-30059930)
chr5 (1-331)||(30399281-30399623)
chr5 (1-233)||(17418824-17419056)
chr5 (56-228)||(29852570-29852742)
chr5 (257-350)||(29852783-29852876)
chr5 (52-130)||(4380925-4381003)
chr5 (268-350)||(30206008-30206090)
chr5 (262-350)||(17418695-17418783)
chr5 (187-231)||(30474774-30474818)
chr5 (54-228)||(30205782-30205956)
chr5 (258-328)||(17982400-17982470)
chr5 (187-220)||(30522299-30522332)
chr5 (187-220)||(30562639-30562672)
chr5 (190-223)||(30430351-30430384)
chr5 (258-335)||(30474854-30474931)
[»] chr4 (3 HSPs)
chr4 (1-350)||(20297129-20297490)
chr4 (258-350)||(13616084-13616176)
chr4 (258-302)||(52351439-52351483)
[»] chr7 (2 HSPs)
chr7 (1-214)||(26706548-26706761)
chr7 (257-334)||(26706816-26706893)
[»] chr1 (4 HSPs)
chr1 (258-350)||(7098897-7098989)
chr1 (258-335)||(7582272-7582349)
chr1 (187-224)||(7582395-7582432)
chr1 (187-235)||(7098814-7098862)


Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 30748859 - 30749208
Alignment:
Q  1 tcatcatccaagtatttcagattatacatataagataatctcagnnnnnnnagagatggtagtttaccaagtgacggaagccgcacaacttttttgcaaa 100  Q
    ||||||||||||||||||||||||| ||||  | ||||||| ||       ||||||||||||||||||||| ||||||||||||||| ||| |||||||    
T  30748859 tcatcatccaagtatttcagattattcataccatataatcttagtttttttagagatggtagtttaccaagtaacggaagccgcacaattttgttgcaaa 30748958  T
Q  101 aactaagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgagtg 200  Q
        |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  30748959 tctcaagttcaagagaaattaaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtg 30749058  T
Q  201 aggttgaagcacttcaagtacttgctcagcactgaccgtagattccttcttgtatccccatgacaagcataattcatgaaggtcttttttacccatcaaa 300  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30749059 aggttgaagcacttcaagtacttgctcagcactaaccgtagattcctccttgtatacccatgacaagcataattcatgaaggtcttttttacccatcaaa 30749158  T
Q  301 ttagccgcttcagcttcagataaactaccaacattgtttaatcctttgat 350  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30749159 ttagccgcttcagcttcagataaactgccaacattgtttaatcctttgat 30749208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 30678055 - 30677706
Alignment:
Q  1 tcatcatccaagtatttcagattatacatataagataatctcagnnnnnnnagagatggtagtttaccaagtgacggaagccgcacaacttttttgcaaa 100  Q
    ||||||||||||||||||||||||| ||||  ||||||||||||       |||||||||||||||||| || ||||||||||||||| ||| |||||      
T  30678055 tcatcatccaagtatttcagattattcatacgagataatctcagtctttttagagatggtagtttaccacgtaacggaagccgcacaattttgttgcatt 30677956  T
Q  101 aactaagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgagtg 200  Q
        |||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||    
T  30677955 cctcaagttcaagagaaattaaattactaagaataattatccaacttggtaacgataatctttcatagtaatttattgtcaagcatttgagatttgagtg 30677856  T
Q  201 aggttgaagcacttcaagtacttgctcagcactgaccgtagattccttcttgtatccccatgacaagcataattcatgaaggtcttttttacccatcaaa 300  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  30677855 aggtttaagcacttcaagtacttgctcagcactaaccgtagattcctccttgtatccccatgacaagcataattcatgaaggtcttttttatccatcaat 30677756  T
Q  301 ttagccgcttcagcttcagataaactaccaacattgtttaatcctttgat 350  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30677755 ttagccgcttcagcttcagataaactagcaacattgtttaatcctttgat 30677706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 29871402 - 29871747
Alignment:
Q  1 tcatcatccaagtatttcagattatacatataagataatctcagnnnnnnnagagatggtagtttaccaagtgacggaagccgcacaacttttttgcaaa 100  Q
    ||||||||||||||||||||||||| |||||||||||||  |||       ||||||||||||||||||||| |||||||||||||||  || ||||||     
T  29871402 tcatcatccaagtatttcagattatccatataagataattccagtttttttagagatggtagtttaccaagtaacggaagccgcacaatcttgttgcaat 29871501  T
Q  101 aactaagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgagtg 200  Q
        ||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  29871502 cctcaagtttaagagaaattaaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtg 29871601  T
Q  201 aggttgaagcacttcaagtacttgctcagcactgaccgtagattccttcttgtatccccatgacaagcataattcatgaaggtcttttttacccatcaaa 300  Q
    |||||||||| |||| ||||||||||||||||| |   |||||||||  |   ||  ||||||||||||||||| |||||||||||||||||||||||||    
T  29871602 aggttgaagctcttcgagtacttgctcagcactaattatagattcctgttgcgatatccatgacaagcataattgatgaaggtcttttttacccatcaaa 29871701  T
Q  301 ttagccgcttcagcttcagataaactaccaacattgtttaatcctt 346  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  29871702 ttagccgcttcagcttcagataaactgccaacattgtttaatcctt 29871747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 30482620 - 30482965
Alignment:
Q  1 tcatcatccaagtatttcagattatacatataagataatctcagnnnnnnnagagatggtagtttaccaagtgacggaagccgcacaacttttttgcaaa 100  Q
    ||||||||||||||||||||||||| |||||||||||||  |||       ||||||||||||||||||||| ||||||||||||||| ||| ||||||     
T  30482620 tcatcatccaagtatttcagattatccatataagataattccagtttttttagagatggtagtttaccaagtaacggaagccgcacaattttgttgcaat 30482719  T
Q  101 aactaagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgagtg 200  Q
      | |||||||| | ||||||||||||||||||   |||||||||||||||||||||| ||||||| || ||||||||||||| ||||||||||||||||    
T  30482720 tccgaagttcaagagaaattaaattactaagaaggcttatccaacttggtaacgataacccttcattgtaatttattgtcaagcatttgagatttgagtg 30482819  T
Q  201 aggttgaagcacttcaagtacttgctcagcactgaccgtagattccttcttgtatccccatgacaagcataattcatgaaggtcttttttacccatcaaa 300  Q
    |||||||||| |||||||||||||||||||||| |   |||||||||  | | ||  |||||||||||||||||||||||||||||||||||||||||||    
T  30482820 aggttgaagctcttcaagtacttgctcagcactaattatagattcctgttgggatatccatgacaagcataattcatgaaggtcttttttacccatcaaa 30482919  T
Q  301 ttagccgcttcagcttcagataaactaccaacattgtttaatcctt 346  Q
    ||||||||||||||||||||||| || |||||||||||||||||||    
T  30482920 ttagccgcttcagcttcagataacctgccaacattgtttaatcctt 30482965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 30243259 - 30242919
Alignment:
Q  1 tcatcatccaagtatttcagattatacatataagataatctcagnnnnnnnagagatggtagtttaccaagtgacggaagccgcacaacttttttgcaaa 100  Q
    ||||||||||||||||||||||||| ||| |   |||||  |||       ||| ||||||||||||||||| ||||||||||||||| ||| ||||||     
T  30243259 tcatcatccaagtatttcagattatccatttcgaataattccagtttttttagatatggtagtttaccaagtaacggaagccgcacaattttgttgcaat 30243160  T
Q  101 aactaagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgagtg 200  Q
      | |||||||| | |||||||||||||||||| |||||||||||||||||| |||||||| ||||||  | ||||| ||||| | ||||||||||||||    
T  30243159 tccgaagttcaagagaaattaaattactaagaagaattatccaacttggtaaggataatccctcatagaaacttattttcaagcacttgagatttgagtg 30243060  T
Q  201 aggttgaagcacttcaagtacttgctcagcactgaccgtagattccttcttgtatccccatgacaagcataattcatgaaggtcttttttacccatcaaa 300  Q
    ||||||||||||||||||||||||||||||||| |   ||||||| |  | | ||  |||||||||||||||||||||||||||||||||||||||||||    
T  30243059 aggttgaagcacttcaagtacttgctcagcactaattatagattcatgttgggatatccatgacaagcataattcatgaaggtcttttttacccatcaaa 30242960  T
Q  301 ttagccgcttcagcttcagataaactaccaacattgtttaa 341  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  30242959 ttagccgcttcagcttcagataaactgccaacattgtttaa 30242919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 30714321 - 30713960
Alignment:
Q  1 tcatcatccaagtatttcagattatacatataagataatctcagnnnnnnnagagatggtagtttaccaagtgacggaagccgcacaacttttttgcaaa 100  Q
    |||||||||||||||||||||||||  |||  | ||||||||||       ||||||||||||||||||||| ||||||||||||||| ||| ||||||     
T  30714321 tcatcatccaagtatttcagattattgataccatataatctcagtttttttagagatggtagtttaccaagtaacggaagccgcacaattttcttgcaat 30714222  T
Q  101 aactaagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgagtg 200  Q
        |||| ||| | ||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||    
T  30714221 ggagaagtacaagagaaactaaattactaagaataattatccaacttggtaatgataatccttcatagtaatttattgtcaagcatttgagatttgagtg 30714122  T
Q  201 aggttgaagcacttcaagtacttgctcagcactgaccgtag-----------attcctt-cttgtatccccatgacaagcataattcatgaaggtctttt 288  Q
    |||||||||| |||| ||||||||||||||||| ||   ||           |||||||  |||| |  |||||||||| ||||||||||||||||||||    
T  30714121 aggttgaagctcttcgagtacttgctcagcactaacaacaggggtctttggaattccttgtttgtctttccatgacaagtataattcatgaaggtctttt 30714022  T
Q  289 ttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatcctttgat 350  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  30714021 ttacccatcaaattagccgcttcagcttcaaataaactgccaacattgtttaatcctttgat 30713960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 30435038 - 30435387
Alignment:
Q  1 tcatcatccaagtatttcagattatacatataagataatctcagnnnnnnnagagatggtagtttaccaagtgacggaagccgcacaacttttttgcaaa 100  Q
    ||||||||||||||||||||||||| ||||  | ||| ||| ||       ||||||||||||||||||| | ||||||||||||||| ||| ||||||     
T  30435038 tcatcatccaagtatttcagattattcataccatatactctaagtttttttagagatggtagtttaccaaataacggaagccgcacaattttgttgcaat 30435137  T
Q  101 aactaagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgagtg 200  Q
      | ||||| || | |||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||   |||| | ||||||||||||||    
T  30435138 ccccaagtttaagagaaattaaattactaagaataattatccaacttggtaacgataatccgtcatagcaatttatatccaagcacttgagatttgagtg 30435237  T
Q  201 aggttgaagcacttcaagtacttgctcagcactgaccgtagattccttcttgtatccccatgacaagcataattcatgaaggtcttttttacccatcaaa 300  Q
    |||||||||| |||| |||| ||||||||  || |   |||||||||  |   ||  ||| ||||||||||||||||||||||||||||||||| |||||    
T  30435238 aggttgaagctcttcgagtaattgctcagatctaattatagattcctgttgcgatatccacgacaagcataattcatgaaggtcttttttacccttcaaa 30435337  T
Q  301 ttagccgcttcagcttcagataaactaccaacattgtttaatcctttgat 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30435338 ttagccgcttcagcttcagataaactaccaacattgtttaatcctttgat 30435387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 30339412 - 30339067
Alignment:
Q  1 tcatcatccaagtatttcagattatacatataagataatctcagnnnnnnnagagatggtagtttaccaagtgacggaagccgcacaacttttttgcaaa 100  Q
    ||||||||||||||||||||||||| ||||  | ||| ||| ||       ||||||||||||||||||||| || ||||| |||||| ||| ||||||     
T  30339412 tcatcatccaagtatttcagattattcatacgatatactctaagattttttagagatggtagtttaccaagtaactgaagcagcacaattttgttgcaat 30339313  T
Q  101 aactaagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgagtg 200  Q
      | ||| | || | ||||||||||||||||||   ||||||||||||||||||||||||||||||||  ||||| ||||||| | ||||||||||||||    
T  30339312 tccaaagattaagagaaattaaattactaagaaggcttatccaacttggtaacgataatccttcatagaaatttactgtcaaggaattgagatttgagtg 30339213  T
Q  201 aggttgaagcacttcaagtacttgctcagcactgaccgtagattccttcttgtatccccatgacaagcataattcatgaaggtcttttttacccatcaaa 300  Q
    |||||||||| |||| || |||||||||||||| |   |||||||||  |   ||  ||| ||||||||||||| |||||||||||||||||||||||||    
T  30339212 aggttgaagctcttcgagcacttgctcagcactaattatagattcctgttgcgatatccacgacaagcataattgatgaaggtcttttttacccatcaaa 30339113  T
Q  301 ttagccgcttcagcttcagataaactaccaacattgtttaatcctt 346  Q
    ||||||||||||||||||||||| || |||||||||||||||||||    
T  30339112 ttagccgcttcagcttcagataacctgccaacattgtttaatcctt 30339067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 30059573 - 30059930
Alignment:
Q  1 tcatcatccaagtatttcagattatacatataagataatctcagnnnnnnnagagatggtagtttaccaagtgacggaagccgcacaacttttttgcaaa 100  Q
    ||||||||||||||||||||||||| |||||||||||||  |||       | |||||||||| |||||||| || |||||||||||||||| || |||     
T  30059573 tcatcatccaagtatttcagattatccatataagataattccaggttttttaaagatggtagtataccaagtaactgaagccgcacaactttcttacaac 30059672  T
Q  101 aactaagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgagtg 200  Q
       |||||| || | ||| |||||||||||||||||||||||||||||| || |||||||| ||||||  | ||||| ||||| | ||||||||||||||    
T  30059673 gcttaagtttaagagaaactaaattactaagaataattatccaacttggcaaggataatccctcatagaaacttattttcaagcagttgagatttgagtg 30059772  T
Q  201 aggttgaagcacttcaagtacttgctcagcactgaccgtag-----------attcctt-cttgtatccccatgacaagcataattcatgaaggtctttt 288  Q
    ||||||||| |||||||||||||||||| |||| ||   ||           |||||||  |||| |  |||||||||| ||||||||||||||||||||    
T  30059773 aggttgaagaacttcaagtacttgctcaacactaacaacagggttctttggaattccttgtttgtctttccatgacaagtataattcatgaaggtctttt 30059872  T
Q  289 ttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatcctt 346  Q
    |||||||||||||||||||||||||||||| |||| || |||||||||||||||||||    
T  30059873 ttacccatcaaattagccgcttcagcttcaaataacctgccaacattgtttaatcctt 30059930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 30399281 - 30399623
Alignment:
Q  1 tcatcatccaagtatttcagattatacatataagataatctcagnnnnnnnagagatggtagtttaccaagtgacggaagccgcacaacttttttgcaaa 100  Q
    ||||||||||||||||||||||||| ||||| |||||||  |||       ||||| ||||||||||||| | || |||| ||||||||||| ||||||     
T  30399281 tcatcatccaagtatttcagattatccatatcagataattccagtttttttagagacggtagtttaccaattaactgaagtcgcacaactttcttgcaat 30399380  T
Q  101 aactaagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgagtg 200  Q
      | |||||||| | ||| ||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||| ||||| | ||||||||||||||    
T  30399381 tcccaagttcaagagaaactaaattactaagaataattatccaacttggtaatgataatccgtcatagtaatttattttcaagcacttgagatttgagtg 30399480  T
Q  201 aggttgaagcacttcaagtacttgctcagcactga------------ccgtagattccttcttgtatccccatgacaagcataattcatgaaggtctttt 288  Q
    ||||||||||||||| |||||||||| |||||| |              ||| || | |  |||  | ||||||||||||||||||||||||||||||||    
T  30399481 aggttgaagcacttcgagtacttgctgagcactaatagttgggggattggtaaatccatagttgctttcccatgacaagcataattcatgaaggtctttt 30399580  T
Q  289 ttacccatcaaattagccgcttcagcttcagataaactaccaa 331  Q
    ||||||||||||| |||||||| ||||| ||||||||| ||||    
T  30399581 ttacccatcaaatcagccgcttgagcttgagataaactgccaa 30399623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 17419056 - 17418824
Alignment:
Q  1 tcatcatccaagtatttcagattatacatataagataatctcagnnnnnnnagagatggtagtttaccaagtgacggaagccgcacaacttttttgcaaa 100  Q
    ||||||||||||||||||||||| | ||| |||||||||  |||       |||||| |||||||||||| ||||| ||||||||||   || |  |||     
T  17419056 tcatcatccaagtatttcagatttttcatgtaagataattccagtaattttagagattgtagtttaccaaatgacgaaagccgcacacagttctcacaat 17418957  T
Q  101 aactaagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgagtg 200  Q
     ||||||| |||||  || |||||||||||||||| ||||||||||||||||| ||| ||| ||||||| | ||||| ||||| | ||||||||||||||    
T  17418956 tactaagtgcaacattaactaaattactaagaatacttatccaacttggtaacaatattccatcatagtaagttattttcaagcacttgagatttgagtg 17418857  T
Q  201 aggttgaagcacttcaagtacttgctcagcact 233  Q
    |||||||||||||||||||| ||||||||||||    
T  17418856 aggttgaagcacttcaagtagttgctcagcact 17418824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 56 - 228
Target Start/End: Original strand, 29852570 - 29852742
Alignment:
Q  56 atggtagtttaccaagtgacggaagccgcacaacttttttgcaaaaactaagttcaacaaaaattaaattactaagaataattatccaacttggtaacga 155  Q
    |||||||||||| |||| ||||||||||||||| ||| ||||||   | |||||||| | |||||||| |||||||||   |||||||||||||||||||    
T  29852570 atggtagtttacaaagtaacggaagccgcacaattttgttgcaattccgaagttcaagagaaattaaactactaagaaggcttatccaacttggtaacga 29852669  T
Q  156 taatccttcatagttatttattgtcaagtatttgagatttgagtgaggttgaagcacttcaagtacttgctca 228  Q
    |||||||||||||| ||||||   |||| | |||||||||||||||||||||||| |||| ||||||||||||    
T  29852670 taatccttcatagtaatttatgtccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctca 29852742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 257 - 350
Target Start/End: Original strand, 29852783 - 29852876
Alignment:
Q  257 cccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatcctttgat 350  Q
    |||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| || ||||  ||||| ||||||||    
T  29852783 cccatgacaaacataattcatgaatgtctgttttacccatcaaattagccgcttcagcttcagataaactgcccacatcttttaagcctttgat 29852876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 52 - 130
Target Start/End: Original strand, 4380925 - 4381003
Alignment:
Q  52 agagatggtagtttaccaagtgacggaagccgcacaacttttttgcaaaaactaagttcaacaaaaattaaattactaa 130  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||| || ||||| || | |||||||||||||||    
T  4380925 agagatgttagtttaccaagtgacggaagccgcacaactttgttgcaaacacaaagtttaagagaaattaaattactaa 4381003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 268 - 350
Target Start/End: Original strand, 30206008 - 30206090
Alignment:
Q  268 cataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatcctttgat 350  Q
    |||||||| || ||||||||||||||||||||||| || |||| ||||||||||||||||| |||||  ||||| ||||||||    
T  30206008 cataattcctggaggtcttttttacccatcaaattggctgcttgagcttcagataaactacaaacatcatttaaacctttgat 30206090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 262 - 350
Target Start/End: Complemental strand, 17418783 - 17418695
Alignment:
Q  262 gacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatcctttgat 350  Q
    |||||||||||||| || |||||||||||||| ||||| |||||  ||| ||||||||||||| |||||||||  ||||| ||||||||    
T  17418783 gacaagcataattcttggaggtcttttttacctatcaacttagcttcttgagcttcagataaattaccaacatcttttaagcctttgat 17418695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 30474774 - 30474818
Alignment:
Q  187 ttgagatttgagtgaggttgaagcacttcaagtacttgctcagca 231  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  30474774 ttgagatttgagtgaggttgaagcatttcaagtacttgctcagca 30474818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 228
Target Start/End: Original strand, 30205782 - 30205956
Alignment:
Q  54 agatggtagtttaccaagtgacggaagccgcacaacttttttgcaaaaactaagttcaacaaaaattaaattactaagaataattatccaacttggtaac 153  Q
    |||| |||||||||||| ||||||||||||||||  ||| |  |||   | |||| ||| |  || ||||||||| |||||| ||||||||||||||||     
T  30205782 agattgtagtttaccaaatgacggaagccgcacacatttctcacaattccaaagtacaagagcaactaaattactgagaatacttatccaacttggtaag 30205881  T
Q  154 gataatccttcatagttatttattgtcaagtatttgagatttgagtgaggttgaagcacttcaagtacttgctca 228  Q
     ||||||  | ||||| |   ||| ||||    ||||||||||||||||||||||||||||||| || |||||||    
T  30205882 aataatctgttatagtgacaaattatcaacctcttgagatttgagtgaggttgaagcacttcaaatagttgctca 30205956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 328
Target Start/End: Original strand, 17982400 - 17982470
Alignment:
Q  258 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactac 328  Q
    |||||||| |||||||||||  |||||||||||||| || ||||| ||  ||||| |||||||||||||||    
T  17982400 ccatgacaggcataattcattgaggtcttttttacctataaaatttgcttcttcaacttcagataaactac 17982470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 30522332 - 30522299
Alignment:
Q  187 ttgagatttgagtgaggttgaagcacttcaagta 220  Q
    ||||||||||||||||||||||||||||||||||    
T  30522332 ttgagatttgagtgaggttgaagcacttcaagta 30522299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 30562672 - 30562639
Alignment:
Q  187 ttgagatttgagtgaggttgaagcacttcaagta 220  Q
    ||||||||||||||||||||||||||||||||||    
T  30562672 ttgagatttgagtgaggttgaagcacttcaagta 30562639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 30430351 - 30430384
Alignment:
Q  190 agatttgagtgaggttgaagcacttcaagtactt 223  Q
    ||||||||||||| ||||||||||||||||||||    
T  30430351 agatttgagtgagattgaagcacttcaagtactt 30430384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 335
Target Start/End: Original strand, 30474854 - 30474931
Alignment:
Q  258 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacatt 335  Q
    |||||||||| ||||||| || ||||| ||||||||||||||||| ||   |  ||||||| |||| |||||||||||    
T  30474854 ccatgacaaggataattcttggaggtcctttttacccatcaaattggcatgtcgagcttcaaataagctaccaacatt 30474931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 20297490 - 20297129
Alignment:
Q  1 tcatcatccaagtatttcagattatacatataagataatctcagnnnnnnnagagatggtagtttaccaagtgacggaagccgcacaacttttttgcaaa 100  Q
    ||||||||||||||||||||||||||||||  ||||| | ||||       ||||||||||||||||||| | |||||||| |||||| ||  ||||||     
T  20297490 tcatcatccaagtatttcagattatacataccagatattgtcagtttttttagagatggtagtttaccaattaacggaagctgcacaatttcgttgcaat 20297391  T
Q  101 aactaagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgagtg 200  Q
        |||||||| | ||| |||||||||||||||||||||||||||||||||| | ||||| ||||||  |||||||  |||| | ||||||||||| ||    
T  20297390 tctcaagttcaaaagaaactaaattactaagaataattatccaacttggtaaccacaatccatcatagcaatttatttccaagcacttgagatttgactg 20297291  T
Q  201 aggttgaagcacttcaagtacttgctcagcactgac------------cgtagattccttcttgtatccccatgacaagcataattcatgaaggtctttt 288  Q
    ||||||||||||||| ||||||| ||||||||| ||             ||| |||  |  |||  | |||| |||||||||||||||||||||||||||    
T  20297290 aggttgaagcacttcgagtactttctcagcacttacagttggtggcttggtaaatttatcattgctttcccaagacaagcataattcatgaaggtctttt 20297191  T
Q  289 ttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatcctttgat 350  Q
    |||||||||||||| ||  ||| ||||||||||| ||| |||||||  ||||| ||||||||    
T  20297190 ttacccatcaaattggcttcttgagcttcagatatactgccaacatcttttaagcctttgat 20297129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 350
Target Start/End: Original strand, 13616084 - 13616176
Alignment:
Q  258 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatcctttgat 350  Q
    |||||||||| |||||||||  |||||||||||| |||| ||||| ||  ||| ||||||| |||||||||| | ||| | ||| ||||||||    
T  13616084 ccatgacaagaataattcatcgaggtcttttttatccattaaattggcttcttgagcttcaaataaactacctatattttgtaagcctttgat 13616176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 302
Target Start/End: Original strand, 52351439 - 52351483
Alignment:
Q  258 ccatgacaagcataattcatgaaggtcttttttacccatcaaatt 302  Q
    |||||||| |||||||||  | |||||||||||||||||||||||    
T  52351439 ccatgacaggcataattctcggaggtcttttttacccatcaaatt 52351483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 26706548 - 26706761
Alignment:
Q  1 tcatcatccaagtatttcagattatacatataagataatctcagnnnnnnnagagatggtagtttaccaagtgacggaagccgcacaacttttttgcaaa 100  Q
    ||||||||||||||||||||||||  |||| ||||||||  |||       ||||||||||||||||||||| ||||||||||||||| ||| ||||||     
T  26706548 tcatcatccaagtatttcagattaaccatagaagataattccagtttttctagagatggtagtttaccaagtaacggaagccgcacaaatttcttgcaat 26706647  T
Q  101 aactaagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgagtg 200  Q
      | |||||||| | ||| |||||||||||||||| ||| |||||||||||| |||||||| || ||||  ||||||  |||| | ||||||||||||||    
T  26706648 ccccaagttcaagagaaactaaattactaagaatacttacccaacttggtaatgataatccgtcgtagtactttatttccaagcacttgagatttgagtg 26706747  T
Q  201 aggttgaagcactt 214  Q
    ||||||||||||||    
T  26706748 aggttgaagcactt 26706761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 334
Target Start/End: Original strand, 26706816 - 26706893
Alignment:
Q  257 cccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacat 334  Q
    ||||||||||||||||||  |  |||| |||||| ||||||||||| ||  ||| ||||||||||||||| |||||||    
T  26706816 cccatgacaagcataatttttcgaggttttttttccccatcaaattggcttcttgagcttcagataaactgccaacat 26706893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 258 - 350
Target Start/End: Original strand, 7098897 - 7098989
Alignment:
Q  258 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatcctttgat 350  Q
    ||||||||||||||||||||  ||||||||||||||||| ||||| ||  ||| |||||||||||||||||||||||| | ||| ||||||||    
T  7098897 ccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgat 7098989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 335
Target Start/End: Complemental strand, 7582349 - 7582272
Alignment:
Q  258 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacatt 335  Q
    ||||||||||||||||||||  |||||||||||||||||||| || ||  ||| |||||||||||||||||| |||||    
T  7582349 ccatgacaagcataattcatcgaggtcttttttacccatcaagttggcttcttgagcttcagataaactaccgacatt 7582272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 7582432 - 7582395
Alignment:
Q  187 ttgagatttgagtgaggttgaagcacttcaagtacttg 224  Q
    |||||||||| |||||||||||||||||||||||||||    
T  7582432 ttgagatttgtgtgaggttgaagcacttcaagtacttg 7582395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 7098814 - 7098862
Alignment:
Q  187 ttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactga 235  Q
    ||||||||||  ||||||||||||||||||| |||||| ||| ||||||    
T  7098814 ttgagatttgtatgaggttgaagcacttcaattacttgatcatcactga 7098862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University