View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5742_low_16 (Length: 351)

Name: NF5742_low_16
Description: NF5742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5742_low_16
NF5742_low_16
[»] chr6 (8 HSPs)
chr6 (4-286)||(19624710-19624992)
chr6 (136-255)||(20819385-20819504)
chr6 (41-122)||(12304343-12304424)
chr6 (136-268)||(25137796-25137924)
chr6 (138-255)||(17520547-17520664)
chr6 (41-115)||(20819483-20819557)
chr6 (147-268)||(12304441-12304562)
chr6 (307-343)||(19624653-19624689)
[»] scaffold0001 (1 HSPs)
scaffold0001 (42-268)||(426371-426600)
[»] chr4 (5 HSPs)
chr4 (25-278)||(49605018-49605270)
chr4 (135-263)||(34952935-34953063)
chr4 (42-92)||(12692881-12692931)
chr4 (178-253)||(53512380-53512455)
chr4 (173-253)||(55610084-55610164)
[»] scaffold0160 (1 HSPs)
scaffold0160 (60-212)||(16398-16550)
[»] chr3 (6 HSPs)
chr3 (136-268)||(23334039-23334170)
chr3 (136-268)||(12718451-12718584)
chr3 (41-255)||(10493716-10493930)
chr3 (41-126)||(12718552-12718637)
chr3 (39-121)||(23333984-23334066)
chr3 (173-253)||(16478704-16478784)
[»] chr8 (4 HSPs)
chr8 (136-268)||(11457701-11457833)
chr8 (136-260)||(28285118-28285242)
chr8 (39-124)||(11457803-11457888)
chr8 (136-260)||(38620968-38621092)
[»] scaffold0210 (2 HSPs)
scaffold0210 (136-268)||(7333-7465)
scaffold0210 (41-126)||(7280-7365)
[»] chr5 (8 HSPs)
chr5 (79-260)||(28335172-28335353)
chr5 (136-268)||(23248297-23248429)
chr5 (136-206)||(23342738-23342808)
chr5 (39-93)||(22910496-22910550)
chr5 (153-253)||(27950156-27950256)
chr5 (39-122)||(23248401-23248484)
chr5 (307-341)||(23248229-23248263)
chr5 (158-251)||(41614737-41614830)
[»] chr2 (7 HSPs)
chr2 (136-268)||(21484359-21484491)
chr2 (117-260)||(26414643-26414787)
chr2 (39-122)||(21484304-21484387)
chr2 (172-253)||(31717139-31717220)
chr2 (81-163)||(37127077-37127159)
chr2 (172-253)||(16414581-16414662)
chr2 (174-210)||(45536463-45536499)
[»] chr7 (10 HSPs)
chr7 (139-269)||(1852836-1852966)
chr7 (64-163)||(19522163-19522262)
chr7 (25-99)||(1852968-1853042)
chr7 (79-164)||(19516504-19516589)
chr7 (188-268)||(19647818-19647898)
chr7 (25-93)||(19516419-19516487)
chr7 (138-268)||(1378277-1378406)
chr7 (136-209)||(31325269-31325342)
chr7 (41-93)||(1378409-1378461)
chr7 (174-253)||(45490943-45491022)
[»] chr1 (3 HSPs)
chr1 (46-255)||(41367698-41367908)
chr1 (171-253)||(50890668-50890750)
chr1 (172-253)||(7563000-7563081)
[»] scaffold0127 (1 HSPs)
scaffold0127 (46-255)||(37077-37287)
[»] scaffold0054 (2 HSPs)
scaffold0054 (41-108)||(18083-18150)
scaffold0054 (136-255)||(18136-18255)
[»] scaffold0064 (1 HSPs)
scaffold0064 (138-210)||(62255-62327)


Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 4 - 286
Target Start/End: Complemental strand, 19624992 - 19624710
Alignment:
Q  4 tcttgtgttttactcatattcatgttatactatatgccaaagatgtttatttaaacgctaaaataattcgaattcaactcaattttatagcgtgtaaata 103  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  19624992 tcttgtgtttttctcaccttcatgttatactttatgccaaagatctttatttaaacgctaaaataattcgaatttaactcaattttatagcgtgtaagta 19624893  T
Q  104 caattaggattatataatctgaacttaactaaggtgtaagtgaaattcagattatataatctgaattccttcaacataggattattttgtatgatccaca 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19624892 caattaggattatataatctgaacttaactaaggtgtaagtgaaattcggattatataatctgaattccttcatcataggattattttgtatgatccaca 19624793  T
Q  204 ttgcaccgatagtttacgcggttcacaacgtccagatacctctataaataagcgtttctggttttattttcattatcaacaaa 286  Q
    |||||||||||||||| ||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  19624792 ttgcaccgatagtttatgcggtccacgacgtccagatatctctataaataagcgtttctggttttattttcattatcagcaaa 19624710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 136 - 255
Target Start/End: Complemental strand, 20819504 - 20819385
Alignment:
Q  136 ggtgtaagtgaaattcagattatataatctgaattccttcaacataggattattttgtatgatccacattgcaccgatagtttacgcggttcacaacgtc 235  Q
    |||||||||| ||||| ||||| | |||  |||||||||||||||| |||| |||||||||  ||||| |||||||| | ||| || ||| |||||||||    
T  20819504 ggtgtaagtgcaattcggattacacaattcgaattccttcaacatatgattcttttgtatggaccacaatgcaccgacaattttcgtggtccacaacgtc 20819405  T
Q  236 cagatacctctataaataag 255  Q
    ||||||||||| ||||||||    
T  20819404 cagatacctctttaaataag 20819385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 12304343 - 12304424
Alignment:
Q  41 caaagatgtttatttaaacgctaaaataattcgaattcaactcaattttatagcgtgtaaatacaattaggattatataatc 122  Q
    |||||||||| ||||||||||||||||| | |||||||||||||||||| ||| |||||| ||||||  |||||||||||||    
T  12304343 caaagatgttcatttaaacgctaaaatagtccgaattcaactcaattttttagggtgtaagtacaatccggattatataatc 12304424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 268
Target Start/End: Original strand, 25137796 - 25137924
Alignment:
Q  136 ggtgtaagtgaaattcagattatataatctgaattccttcaacataggattattttgtatgatccacattgcaccgatagtttacgcggttcacaacgtc 235  Q
    |||||| ||||||||| ||||| |||||| ||||||||||| |||| |||| |||||||||  |||||||||||||| | |||   |||| ||||    |    
T  25137796 ggtgtatgtgaaattcggattacataatccgaattccttcagcatatgattcttttgtatgggccacattgcaccgaaaatttctccggtccaca----c 25137891  T
Q  236 cagatacctctataaataagcgtttctggtttt 268  Q
    |||||||||||||||||||| ||||| ||||||    
T  25137892 cagatacctctataaataagtgtttccggtttt 25137924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 138 - 255
Target Start/End: Complemental strand, 17520664 - 17520547
Alignment:
Q  138 tgtaagtgaaattcagattatataatctgaattccttcaacataggattattttgtatgatccacattgcaccgatagtttacgcggttcacaacgtcca 237  Q
    |||||||  ||||| ||||||||||||||||||   ||| |||||||||  ||| | |||||||||||||||||| |||||  | ||| ||||||  | |    
T  17520664 tgtaagtacaattcggattatataatctgaatttactcagcataggattcctttttgtgatccacattgcaccgacagtttctgtggtccacaacaccta 17520565  T
Q  238 gatacctctataaataag 255  Q
    ||||||||||||||||||    
T  17520564 gatacctctataaataag 17520547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 20819557 - 20819483
Alignment:
Q  41 caaagatgtttatttaaacgctaaaataattcgaattcaactcaattttatagcgtgtaaatacaattaggatta 115  Q
    |||||||||| ||||||| || ||||| ||||||||| ||||||||||||||| |||||| | ||||| ||||||    
T  20819557 caaagatgttcatttaaatgccaaaatcattcgaatttaactcaattttatagggtgtaagtgcaattcggatta 20819483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 268
Target Start/End: Original strand, 12304441 - 12304562
Alignment:
Q  147 aattcagattatataatctgaattccttcaacataggattattttgt-atgatccacattgcaccgatagtttacgcggttcacaacgtccagatacctc 245  Q
    ||||| ||||||| |||| | ||| | |||||||||||||||||||| | ||| ||||||||||||| | |||  | ||| |||||| |||||| |||      
T  12304441 aattcggattataaaatccggattgcctcaacataggattattttgtgaggat-cacattgcaccgacaatttttgtggtccacaacatccagaaaccct 12304539  T
Q  246 tataaataagcgtttctggtttt 268  Q
    |||||||||| ||||| ||||||    
T  12304540 tataaataagtgtttccggtttt 12304562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 19624689 - 19624653
Alignment:
Q  307 caaagaaaccatggaaatttttgtcaatgtgatgatg 343  Q
    ||||||||||||| || ||||||||||||||||||||    
T  19624689 caaagaaaccatgaaattttttgtcaatgtgatgatg 19624653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 42 - 268
Target Start/End: Original strand, 426371 - 426600
Alignment:
Q  42 aaagatgtttatttaaacgctaaaataattcgaattcaactcaattttatagcgtgtaaatacaattaggattatataatctgaactt---aactaaggt 138  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||| | || || | ||||||||||| ||| ||   ||||| |||    
T  426371 aaagatgttcatttaaacgctaaaataatccgaattcaactcaattttatagggtgtaagtgcatttcgtattatataatccgaattttttaactagggt 426470  T
Q  139 gtaagtgaaattcagattatataatctgaattccttcaacataggattattttgtatgatccacattgcaccgatagtttacgcggttcacaacgtccag 238  Q
    ||||||||||||| |||||||||||| ||||| ||| | ||| ||||| ||||||||| ||||||||||||| |||||||  | ||| ||||||||||||    
T  426471 gtaagtgaaattcggattatataatccgaatttctttatcattggattcttttgtatggtccacattgcaccaatagtttttgtggtccacaacgtccag 426570  T
Q  239 atacctctataaataagcgtttctggtttt 268  Q
    ||||||||||||||||| ||||||||||||    
T  426571 atacctctataaataagtgtttctggtttt 426600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 25 - 278
Target Start/End: Complemental strand, 49605270 - 49605018
Alignment:
Q  25 atgttatactatatgccaaagatgtttatttaaacgctaaaataattcgaattcaactcaattttatagcgtgtaaatacaattaggattatataatctg 124  Q
    ||||| |||| || || |||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||  |||||||||||| |    
T  49605270 atgttttactttacgcgaaagatgttcttttaaacgctaaaataattcgaattcaactcaattttatagggtgtaagcacaatttagattatataatccg 49605171  T
Q  125 aacttaactaaggtgtaagtgaaattcagattatataatctgaattccttcaacataggattattttgtatgatccacattgcaccgatagtttacgcgg 224  Q
    || ||||||| |||||||||  |||| |||||||||||||  ||| | |||| |||| |||| ||||||||| ||||||||||| ||| |||||  | ||    
T  49605170 aatttaactagggtgtaagtacaatttagattatataatccaaatccattcagcatatgattcttttgtatggtccacattgcatcgacagtttctgtgg 49605071  T
Q  225 ttcacaacgtccagatacctctataaataagcgtttctggttttattttcatta 278  Q
      ||||||||| ||||||||||||| ||||| ||||||  ||| ||||||||||    
T  49605070 -ccacaacgtctagatacctctatacataagtgtttctattttcattttcatta 49605018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 135 - 263
Target Start/End: Original strand, 34952935 - 34953063
Alignment:
Q  135 aggtgtaagtgaaattcagattatataatctgaattccttcaacataggattattttgtatgatccacattgcaccgatagtttacgcggttcacaacgt 234  Q
    ||||||||||| ||||  |||||||||||| |||||| || | |||| |||| ||||||||| ||||||||||||||||| |||| | ||| ||||||||    
T  34952935 aggtgtaagtgcaatttggattatataatccgaattcattgagcataagattcttttgtatggtccacattgcaccgataatttatgtggtccacaacgt 34953034  T
Q  235 ccagatacctctataaataagcgtttctg 263  Q
    |||||||| |||||||||||| |||||||    
T  34953035 ccagatacttctataaataagtgtttctg 34953063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 12692881 - 12692931
Alignment:
Q  42 aaagatgtttatttaaacgctaaaataattcgaattcaactcaattttata 92  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  12692881 aaagatgttcatttaaacgcttaaataattcgaattcaactcaattttata 12692931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 253
Target Start/End: Complemental strand, 53512455 - 53512380
Alignment:
Q  178 cataggattattttgtatgatccacattgcaccgatagtttacgcggttcacaacgtccagatacctctataaata 253  Q
    ||||||||| |||||||||| |||||||||||| | |||||| | ||| |||||| ||||   |||||||||||||    
T  53512455 cataggattcttttgtatgaaccacattgcaccaagagtttatgtggtccacaacatccaaggacctctataaata 53512380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 253
Target Start/End: Original strand, 55610084 - 55610164
Alignment:
Q  173 ttcaacataggattattttgtatgatccacattgcaccgatagtttacgcggttcacaacgtccagatacctctataaata 253  Q
    |||||||| ||||| |||||| ||  |||||||||||||| | |||  | ||| ||||||| ||| |||||||||||||||    
T  55610084 ttcaacattggattcttttgtgtgtcccacattgcaccgacaatttttgtggtccacaacgcccacatacctctataaata 55610164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 60 - 212
Target Start/End: Original strand, 16398 - 16550
Alignment:
Q  60 gctaaaataattcgaattcaactcaattttatagcgtgtaaatacaattaggattatataatctgaacttaactaaggtgtaagtgaaattcagattata 159  Q
    |||||||||||||||||||||||||||||||||  ||| || |||  || | |||||||||| |||| ||||||| |||||||||||||||| |||||||    
T  16398 gctaaaataattcgaattcaactcaattttatatggtgcaagtacgcttcgaattatataatatgaatttaactatggtgtaagtgaaattcggattata 16497  T
Q  160 taatctgaattccttcaacataggattattttgtatgatccacattgcaccga 212  Q
    |||||   ||||||||  ||||||||| ||||||||| || ||||||||||||    
T  16498 taatccatattccttcggcataggattcttttgtatggtcgacattgcaccga 16550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 136 - 268
Target Start/End: Original strand, 23334039 - 23334170
Alignment:
Q  136 ggtgtaagtgaaattcagattatataatctgaattccttcaacataggattattttgtatgatccacattgcaccgatagtttacgcggttcacaacgtc 235  Q
    |||||||||||||||| ||||| |||||  ||||||||||| ||||||||| |||||||||  ||||||||||||||||||||| | ||| |||||||||    
T  23334039 ggtgtaagtgaaattcggattacataattcgaattccttcatcataggattcttttgtatggaccacattgcaccgatagtttatgtggtccacaacgtc 23334138  T
Q  236 cagatacctctataaataagcgtttctggtttt 268  Q
    ||||||||||| ||||||||  |||||||||||    
T  23334139 cagatacctctgtaaataag-ttttctggtttt 23334170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 136 - 268
Target Start/End: Complemental strand, 12718584 - 12718451
Alignment:
Q  136 ggtgtaagtgaaattcagattatataatctgaattccttcaacataggattattt-tgtatgatccacattgcaccgatagtttacgcggttcacaacgt 234  Q
    |||||||||||||||| ||||||||||| |||||||||||| ||||||||| ||| ||||||  ||||| |||||| | |||||| |  || ||||||||    
T  12718584 ggtgtaagtgaaattctgattatataatttgaattccttcagcataggattctttgtgtatggaccacactgcaccaacagtttatgtcgtccacaacgt 12718485  T
Q  235 ccagatacctctataaataagcgtttctggtttt 268  Q
    |||||||||| |||||||||  ||||||||||||    
T  12718484 ccagatacctatataaataactgtttctggtttt 12718451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 41 - 255
Target Start/End: Original strand, 10493716 - 10493930
Alignment:
Q  41 caaagatgtttatttaaacgctaaaataattcgaattcaactcaattttatagcgtgtaaatacaattaggattatataatctgaacttaactaaggtgt 140  Q
    |||||||||  |||||||| |||||||||| |||||||||||||||||||||| || ||| |  | ||   ||||||||||| | | | |  || |||||    
T  10493716 caaagatgtgcatttaaactctaaaataatccgaattcaactcaattttatagggtttaagtcaagttgaaattatataatccggattcatatagggtgt 10493815  T
Q  141 aagtgaaattcagattatataatctgaattccttcaacataggattattttgtatgatccacattgcaccgatagtttacgcggttcacaacgtccagat 240  Q
    ||||||||||| |||||  ||||| ||| | ||| | |||| |||| |||| ||||   |||| |||||||| |||||| | ||| ||||||||||| |     
T  10493816 aagtgaaattcggattacgtaatccgaaatgctttagcatatgattcttttatatggatcacaatgcaccgacagtttatgtggtccacaacgtccatag 10493915  T
Q  241 acctctataaataag 255  Q
    |||||||||||||||    
T  10493916 acctctataaataag 10493930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 126
Target Start/End: Complemental strand, 12718637 - 12718552
Alignment:
Q  41 caaagatgtttatttaaacgctaaaataattcgaattcaactcaattttatagcgtgtaaatacaattaggattatataatctgaa 126  Q
    |||||||||| |||||| |||||||||||||||||| |||||||||||||||| |||||| |  ||||  ||||||||||| ||||    
T  12718637 caaagatgttcatttaatcgctaaaataattcgaatccaactcaattttatagggtgtaagtgaaattctgattatataatttgaa 12718552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 23333984 - 23334066
Alignment:
Q  39 gccaaagatgtttatttaaacgctaaaataattcgaattcaactcaattttatagcgtgtaaatacaattaggattatataat 121  Q
    |||||| ||||| ||||| |||||||||||||  ||||||||||||||||||||| |||||| |  |||| |||||| |||||    
T  23333984 gccaaaaatgttcatttacacgctaaaataatctgaattcaactcaattttatagggtgtaagtgaaattcggattacataat 23334066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 16478784 - 16478704
Alignment:
Q  173 ttcaacataggattattttgtatgatccacattgcaccgatagtttacgcggttcacaacgtccagatacctctataaata 253  Q
    |||||||| ||||| |||||| ||  |||||||||||||| | |||  | ||| ||||||| ||| |||||||||||||||    
T  16478784 ttcaacattggattcttttgtgtgtcccacattgcaccgacaatttttgtggtccacaacgcccacatacctctataaata 16478704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 136 - 268
Target Start/End: Complemental strand, 11457833 - 11457701
Alignment:
Q  136 ggtgtaagtgaaattcagattatataatctgaattccttcaacataggattattttgtatgatccacattgcaccgatagtttacgcggttcacaacgtc 235  Q
    |||||||||| ||||| ||||| |||||||| ||||||||| ||||||||| |||||||||  ||||| |||||||| | |||| | ||| |||||||||    
T  11457833 ggtgtaagtgcaattcggattacataatctggattccttcagcataggattcttttgtatggaccacaatgcaccgacaatttatgtggtccacaacgtc 11457734  T
Q  236 cagatacctctataaataagcgtttctggtttt 268  Q
    |||| ||||||||||||||| ||||||||||||    
T  11457733 cagagacctctataaataagtgtttctggtttt 11457701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 260
Target Start/End: Complemental strand, 28285242 - 28285118
Alignment:
Q  136 ggtgtaagtgaaattcagattatataatctgaattccttcaacataggattattttgtatgatccacattgcaccgatagtttacgcggttcacaacgtc 235  Q
    |||||||||| ||||||||| ||||||||| |||||||| | |||| |||| |||| | || |||||||||||||||||||||  | ||| | ||||| |    
T  28285242 ggtgtaagtgcaattcagataatataatctaaattccttgagcataagattcttttatgtggtccacattgcaccgatagtttctgtggtccgcaacgcc 28285143  T
Q  236 cagatacctctataaataagcgttt 260  Q
    || ||||||||||||||||| ||||    
T  28285142 catatacctctataaataagtgttt 28285118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 124
Target Start/End: Complemental strand, 11457888 - 11457803
Alignment:
Q  39 gccaaagatgtttatttaaacgctaaaataattcgaattcaactcaattttatagcgtgtaaatacaattaggattatataatctg 124  Q
    |||||| ||||| ||||||||||||||||  | ||||| ||||||| |||||||| |||||| | ||||| |||||| ||||||||    
T  11457888 gccaaacatgttcatttaaacgctaaaatcttccgaatacaactcatttttatagggtgtaagtgcaattcggattacataatctg 11457803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 260
Target Start/End: Original strand, 38620968 - 38621092
Alignment:
Q  136 ggtgtaagtgaaattcagattatataatctgaattccttcaacataggattattttgtatgatccacattgcaccgatagtttacgcggttcacaacgtc 235  Q
    |||||||||  |||||  ||||||||||   || || |||| |||| |||| |||||| ||||||||||||| |||||| |||  | ||| |||||| ||    
T  38620968 ggtgtaagtacaattcgaattatataattcaaactcattcagcatatgattcttttgtgtgatccacattgcgccgataatttttgtggtccacaacatc 38621067  T
Q  236 cagatacctctataaataagcgttt 260  Q
    || || |||||||||||||| ||||    
T  38621068 caaatgcctctataaataagtgttt 38621092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 136 - 268
Target Start/End: Original strand, 7333 - 7465
Alignment:
Q  136 ggtgtaagtgaaattcagattatataatctgaattccttcaacataggattattttgtatgatccacattgcaccgatagtttacgcggttcacaacgtc 235  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||  ||||| | |||| |  ||||  |  || |||||||||    
T  7333 ggtgtaagtgaaattcagattatataatttgaattccttcagcataggattcttttgtatggaccacactacaccaactgtttttgtcgtccacaacgtc 7432  T
Q  236 cagatacctctataaataagcgtttctggtttt 268  Q
    ||||||||| |||||||||| ||||||||||||    
T  7433 cagatacctatataaataagtgtttctggtttt 7465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 7280 - 7365
Alignment:
Q  41 caaagatgtttatttaaacgctaaaataattcgaattcaactcaattttatagcgtgtaaatacaattaggattatataatctgaa 126  Q
    |||||||||| |||||| |||||||||||||||||| |||||||||||||||| |||||| |  ||||  ||||||||||| ||||    
T  7280 caaagatgttcatttaatcgctaaaataattcgaatccaactcaattttatagggtgtaagtgaaattcagattatataatttgaa 7365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 79 - 260
Target Start/End: Complemental strand, 28335353 - 28335172
Alignment:
Q  79 aactcaattttatagcgtgtaaatacaattaggattatataatctgaacttaactaaggtgtaagtgaaattcagattatataatctgaattccttcaac 178  Q
    ||||| ||||||||| |||||| |||||||   ||||||||||| ||| ||||||| || ||||||  |||||  ||||||||||| |||||| ||||||    
T  28335353 aactcgattttatagggtgtaagtacaattcaaattatataatccgaatttaactagggcgtaagtacaattcgaattatataatccgaattcattcaac 28335254  T
Q  179 ataggattattttgtatgatccacattgcaccgatagtttacgcggttcacaacgtccagatacctctataaataagcgttt 260  Q
    ||| |||| ||||||||| ||||||||| ||||| || ||  | ||| ||||||||| |||||| |||| ||||||| ||||    
T  28335253 atatgattcttttgtatggtccacattgtaccgacagcttctgtggtccacaacgtctagatacatctacaaataagtgttt 28335172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 136 - 268
Target Start/End: Complemental strand, 23248429 - 23248297
Alignment:
Q  136 ggtgtaagtgaaattcagattatataatctgaattccttcaacataggattattttgtatgatccacattgcaccgatagtttacgcggttcacaacgtc 235  Q
    |||||||||| ||||||||||| |||||| |||||| |||| ||||||||| |||||||||  |||||||||||||| |||||  | |||  |||||||     
T  23248429 ggtgtaagtgcaattcagattacataatccgaattcattcagcataggattcttttgtatggaccacattgcaccgacagtttctgtggtatacaacgtg 23248330  T
Q  236 cagatacctctataaataagcgtttctggtttt 268  Q
    |  ||| ||||||||||||| ||||||||||||    
T  23248329 cgtatatctctataaataagtgtttctggtttt 23248297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 23342738 - 23342808
Alignment:
Q  136 ggtgtaagtgaaattcagattatataatctgaattccttcaacataggattattttgtatgatccacattg 206  Q
    ||||||||||||||||||||||||||||| |||||| ||   ||||||||| ||||||||| |||||||||    
T  23342738 ggtgtaagtgaaattcagattatataatccgaattcattattcataggattcttttgtatggtccacattg 23342808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 22910496 - 22910550
Alignment:
Q  39 gccaaagatgtttatttaaacgctaaaataattcgaattcaactcaattttatag 93  Q
    |||||||||||| |||||||| |||||||||| ||||||||| ||||||||||||    
T  22910496 gccaaagatgttcatttaaacactaaaataatccgaattcaaatcaattttatag 22910550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 253
Target Start/End: Complemental strand, 27950256 - 27950156
Alignment:
Q  153 gattatataatctgaattccttcaacataggattattttgtatgatccacattgcaccgatagtttacgcggttcacaacgtccagatacctctataaat 252  Q
    |||||||||||  | ||| ||||| |||| |||| |||||| ||||||||| |||||||| | |||| | |||  |||||| ||| ||||||||||||||    
T  27950256 gattatataattcggattgcttcagcataagattcttttgtgtgatccacaatgcaccgacaatttatgtggtctacaacgcccaaatacctctataaat 27950157  T
Q  253 a 253  Q
    |    
T  27950156 a 27950156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 23248484 - 23248401
Alignment:
Q  39 gccaaagatgtttatttaaacgctaaaataattcgaattcaactcaattttatagcgtgtaaatacaattaggattatataatc 122  Q
    |||||||||||| |||||||| ||||||| |||||||||||| ||| || ||||  |||||| | |||||  ||||| ||||||    
T  23248484 gccaaagatgttcatttaaacactaaaattattcgaattcaaatcatttatatacggtgtaagtgcaattcagattacataatc 23248401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 341
Target Start/End: Complemental strand, 23248263 - 23248229
Alignment:
Q  307 caaagaaaccatggaaatttttgtcaatgtgatga 341  Q
    |||||||||||||||||||||||||| ||||||||    
T  23248263 caaagaaaccatggaaatttttgtcattgtgatga 23248229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 251
Target Start/End: Original strand, 41614737 - 41614830
Alignment:
Q  158 tataatctgaattccttcaacataggattattttgtatgatccacattgcaccgatagtttacgcggttcacaacgtccagatacctctataaa 251  Q
    ||||||||| ||| |||||  || ||||| |||||| ||| ||||||| |||||| |||||    ||| ||||||| |||||||||||||||||    
T  41614737 tataatctggattgcttcagtattggattcttttgtgtgacccacatttcaccgacagtttttatggtccacaacggccagatacctctataaa 41614830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 136 - 268
Target Start/End: Original strand, 21484359 - 21484491
Alignment:
Q  136 ggtgtaagtgaaattcagattatataatctgaattccttcaacataggattattttgtatgatccacattgcaccgatagtttacgcggttcacaacgtc 235  Q
    |||||||||| ||||| |||||| ||||| ||| ||| ||||||||||||| |||||||||  ||||| |||||||| | |||| | ||| |||||||||    
T  21484359 ggtgtaagtgcaattcggattatgtaatccgaaatccctcaacataggattcttttgtatggaccacaatgcaccgacattttatgtggtccacaacgtc 21484458  T
Q  236 cagatacctctataaataagcgtttctggtttt 268  Q
    |||| |||||||||||||||  |||||||||||    
T  21484459 cagagacctctataaataagtatttctggtttt 21484491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 260
Target Start/End: Original strand, 26414643 - 26414787
Alignment:
Q  117 ataatctgaacttaactaaggtgtaagtgaaattcagattatataatctgaattccttcaacatagga-ttattttgtatgatccacattgcaccgatag 215  Q
    |||||| ||| ||||||| |||| ||||| ||||| |||||||||||| ||||||||||| ||||||| || ||||||||| || |||||| ||||| ||    
T  26414643 ataatccgaaattaactagggtgcaagtgcaattccgattatataatccgaattccttcagcataggattttttttgtatggtctacattgtaccgacag 26414742  T
Q  216 tttacgcggttcacaacgtccagatacctctataaataagcgttt 260  Q
    ||||   |||  |||||||||| ||| ||||||||||||| ||||    
T  26414743 tttatatggtctacaacgtccatatatctctataaataagtgttt 26414787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 21484304 - 21484387
Alignment:
Q  39 gccaaagatgtttatttaaacgctaaaataattcgaattcaactcaattttatagcgtgtaaatacaattaggattatataatc 122  Q
    |||||||||||| |||||||||||||||| || ||||||||| | |||||||||| |||||| | ||||| ||||||| |||||    
T  21484304 gccaaagatgttcatttaaacgctaaaatcatccgaattcaaattaattttatagggtgtaagtgcaattcggattatgtaatc 21484387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 31717139 - 31717220
Alignment:
Q  172 cttcaacataggattattttgtatgatccacattgcaccgatagtttacgcggttcacaacgtccagatacctctataaata 253  Q
    ||||| ||| ||||| |||||| |||||||||||||||||| |||||| | ||| ||||||||||| ||| |||||||||||    
T  31717139 cttcatcattggattcttttgtgtgatccacattgcaccgacagtttatgtggtccacaacgtccatataactctataaata 31717220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 163
Target Start/End: Original strand, 37127077 - 37127159
Alignment:
Q  81 ctcaattttatagcgtgtaaatacaattaggattatataatctgaacttaactaaggtgtaagtgaaattcagattatataat 163  Q
    |||||||||||||||||| | |||||||  |||||||||||  ||| || |||| |||||||||  ||||| |||| ||||||    
T  37127077 ctcaattttatagcgtgtgagtacaattcagattatataattcgaattttactagggtgtaagtacaattcggattgtataat 37127159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 16414662 - 16414581
Alignment:
Q  172 cttcaacataggattattttgtatgatccacattgcaccgatagtttacgcggttcacaacgtccagatacctctataaata 253  Q
    |||||||||  |||| || ||| |||||||||||||||||| | |||| | ||| ||||||| | ||||| |||||||||||    
T  16414662 cttcaacattagattcttatgtgtgatccacattgcaccgacaatttatgtggtccacaacgcctagataactctataaata 16414581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 45536499 - 45536463
Alignment:
Q  174 tcaacataggattattttgtatgatccacattgcacc 210  Q
    |||||||||||||||||||||||  ||||||||||||    
T  45536499 tcaacataggattattttgtatggaccacattgcacc 45536463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 1852966 - 1852836
Alignment:
Q  139 gtaagtgaaattcagattatataatctgaattccttcaacataggattattttgtatgatccacattgcaccgatagtttacgcggttcacaacgtccag 238  Q
    ||||||| ||||| ||||| |||||||||||||||||| ||||||||| |||| ||||  ||||| |||||||| | |||| | ||| ||||||||| ||    
T  1852966 gtaagtggaattcggattacataatctgaattccttcagcataggattcttttatatggaccacaatgcaccgacaatttatgtggtccacaacgtctag 1852867  T
Q  239 atacctctataaataagcgtttctggtttta 269  Q
    | |||||  |||||||| ||||| |||||||    
T  1852866 agacctccttaaataagtgtttcaggtttta 1852836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 19522163 - 19522262
Alignment:
Q  64 aaataattcgaattcaactcaattttatagcgtgtaaatacaattaggattatataatctgaacttaactaaggtgtaagtgaaattcagattatataat 163  Q
    ||||||||||| |||||||||||||||||| | |||| |||| || ||||||||||||| ||| ||||||| || ||||||||||||   ||||||||||    
T  19522163 aaataattcgagttcaactcaattttatagagcgtaagtacacttcggattatataatccgaatttaactagggcgtaagtgaaatttgaattatataat 19522262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 1853042 - 1852968
Alignment:
Q  25 atgttatactatatgccaaagatgtttatttaaacgctaaaataattcgaattcaactcaattttatagcgtgta 99  Q
    ||||| |||| || || ||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||    
T  1853042 atgttttactttacgctaaagatgttcatttaaacgctaaaatcattcgaattcaactcaattttatagggtgta 1852968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 79 - 164
Target Start/End: Original strand, 19516504 - 19516589
Alignment:
Q  79 aactcaattttatagcgtgtaaatacaattaggattatataatctgaacttaactaaggtgtaagtgaaattcagattatataatc 164  Q
    ||||||||||||||| |||||| |||| |  ||||||||||||| ||| ||||| | ||||||||| |||||| ||||||||||||    
T  19516504 aactcaattttatagagtgtaagtacactctggattatataatccgaatttaaccagggtgtaagttaaattcggattatataatc 19516589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 268
Target Start/End: Complemental strand, 19647898 - 19647818
Alignment:
Q  188 ttttgtatgatccacattgcaccgatagtttacgcggttcacaacgtccagatacctctataaataagcgtttctggtttt 268  Q
    |||||||||  |||||||||||||| |||||| | ||| ||||||||||||| |||| |||||||||  ||||||||||||    
T  19647898 ttttgtatggaccacattgcaccgacagtttatgtggtccacaacgtccagaaacctttataaataaatgtttctggtttt 19647818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 19516419 - 19516487
Alignment:
Q  25 atgttatactatatgccaaagatgtttatttaaacgctaaaataattcgaattcaactcaattttatag 93  Q
    ||||| |||| || |||||||||||| |||||||| |||||||| |  |||||||||||||||||||||    
T  19516419 atgttttactttacgccaaagatgttcatttaaacactaaaatagtctgaattcaactcaattttatag 19516487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 268
Target Start/End: Complemental strand, 1378406 - 1378277
Alignment:
Q  138 tgtaagtgaaattcagattatataatctgaattccttcaacataggattattttgtatgatccacattgcaccgatagtttacgcggttcacaacgtcca 237  Q
    |||||||| |||||| |||| |||||| |||||||||| | |||||||| ||||||||||  |||| |||||||| |||||    ||| || || |||||    
T  1378406 tgtaagtgcaattcaaattacataatccgaattccttc-agataggattcttttgtatgaatcacaatgcaccgacagtttctatggtccaaaatgtcca 1378308  T
Q  238 gatacctctataaataagcgtttctggtttt 268  Q
    || |||| ||||||||||  |||| ||||||    
T  1378307 gagacctgtataaataagtatttccggtttt 1378277  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 31325269 - 31325342
Alignment:
Q  136 ggtgtaagtgaaattcagattatataatctgaattccttcaacataggattattttgtatgatccacattgcac 209  Q
    |||||||||  ||||  |||||||||||| |||||| |||| |||| |||| |||||| |||||||||||||||    
T  31325269 ggtgtaagtacaatttggattatataatccgaattcattcagcatatgattcttttgtgtgatccacattgcac 31325342  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 1378461 - 1378409
Alignment:
Q  41 caaagatgtttatttaaacgctaaaataattcgaattcaactcaattttatag 93  Q
    |||| ||||||| ||||| ||||||||||| ||||||||| ||||||||||||    
T  1378461 caaatatgtttagttaaatgctaaaataatccgaattcaaatcaattttatag 1378409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 45491022 - 45490943
Alignment:
Q  174 tcaacataggattattttgtatgatccacattgcaccgatagtttacgcggttcacaacgtccagatacctctataaata 253  Q
    ||||||||||||| |||||||||  |||||||||||| | |||||| | ||| |||||| ||||   |||||||||||||    
T  45491022 tcaacataggattcttttgtatggaccacattgcaccaagagtttatgtggtccacaacatccaaggacctctataaata 45490943  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 46 - 255
Target Start/End: Complemental strand, 41367908 - 41367698
Alignment:
Q  46 atgtttatttaaacgctaaaataattcgaa-ttcaactcaattttatagcgtgtaaatacaattaggattatataatctgaacttaactaaggtgtaagt 144  Q
    ||||| ||||||| ||||| |||||  ||| ||||||||||||||| | ||| ||| |  | || ||||||||||||| | | | |  || |||||||||    
T  41367908 atgttcatttaaatgctaatataatctgaaattcaactcaattttaaaacgtttaagtcaagttcggattatataatccggattcacatagggtgtaagt 41367809  T
Q  145 gaaattcagattatataatctgaattccttcaacataggattattttgtatgatccacattgcaccgatagtttacgcggttcacaacgtccagatacct 244  Q
    ||||||| |||||| ||||| ||| | |||||||||| |||| |||||||||  ||||| |||||| | ||||||   | | ||||||||||||| ||||    
T  41367808 gaaattcggattatgtaatccgaaatgcttcaacatatgattcttttgtatggaccacaatgcaccaacagtttatatgctccacaacgtccagagacct 41367709  T
Q  245 ctataaataag 255  Q
    |||||||||||    
T  41367708 ctataaataag 41367698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 253
Target Start/End: Complemental strand, 50890750 - 50890668
Alignment:
Q  171 ccttcaacataggattattttgtatgatccacattgcaccgatagtttacgcggttcacaacgtccagatacctctataaata 253  Q
    |||||||||| ||||| |||||| |||||||||||||||||| |||||| | ||| ||||||| ||| ||| |||||||||||    
T  50890750 ccttcaacattggattcttttgtgtgatccacattgcaccgacagtttaagtggtccacaacgcccaaataactctataaata 50890668  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 7563000 - 7563081
Alignment:
Q  172 cttcaacataggattattttgtatgatccacattgcaccgatagtttacgcggttcacaacgtccagatacctctataaata 253  Q
    ||||||||| | ||| |||||| ||  |||||||||||||| | |||  || || ||||||| |||||||||||||||||||    
T  7563000 cttcaacattgaattcttttgtgtggcccacattgcaccgacaattttagcagtccacaacgcccagatacctctataaata 7563081  T

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Target: scaffold0127 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 46 - 255
Target Start/End: Original strand, 37077 - 37287
Alignment:
Q  46 atgtttatttaaacgctaaaataattcgaa-ttcaactcaattttatagcgtgtaaatacaattaggattatataatctgaacttaactaaggtgtaagt 144  Q
    ||||| ||||||| ||||| ||||| |||| ||||||||||||||| | ||| ||| |  | || ||||||||||||| | | | |  || |||||||||    
T  37077 atgttcatttaaatgctaatataatccgaaattcaactcaattttaaaacgtctaagtcaagttcggattatataatccggattcacatagggtgtaagt 37176  T
Q  145 gaaattcagattatataatctgaattccttcaacataggattattttgtatgatccacattgcaccgatagtttacgcggttcacaacgtccagatacct 244  Q
    ||||||| |||||  ||||| ||| | |||||||||| |||| |||||||||  ||||| |||||| | ||||||   | | ||||| ||||||| ||||    
T  37177 gaaattcggattacgtaatccgaaatgcttcaacatatgattcttttgtatggaccacaatgcaccaacagtttatatgctccacaatgtccagagacct 37276  T
Q  245 ctataaataag 255  Q
    |||||||||||    
T  37277 ctataaataag 37287  T

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Target: scaffold0054 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 18083 - 18150
Alignment:
Q  41 caaagatgtttatttaaacgctaaaataattcgaattcaactcaattttatagcgtgtaaatacaatt 108  Q
    |||| ||||| ||||||||||||||||||| ||||||||| |||||||||||| |||||||| |||||    
T  18083 caaatatgttcatttaaacgctaaaataatccgaattcaaatcaattttatagggtgtaaatgcaatt 18150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 255
Target Start/End: Original strand, 18136 - 18255
Alignment:
Q  136 ggtgtaagtgaaattcagattatataatctgaattccttcaacataggattattttgtatgatccacattgcaccgatagtttacgcggttcacaacgtc 235  Q
    ||||||| || |||||| ||||| ||||| ||| ||| | | ||||||||| |||||||||  ||||| |||||||||| |||  | ||| |||||| ||    
T  18136 ggtgtaaatgcaattcaaattatgtaatccgaaatcccttagcataggattcttttgtatggaccacaatgcaccgatattttctgtggtccacaacatc 18235  T
Q  236 cagatacctctataaataag 255  Q
    |||| || ||||||||||||    
T  18236 cagagacttctataaataag 18255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 62255 - 62327
Alignment:
Q  138 tgtaagtgaaattcagattatataatctgaattccttcaacataggattattttgtatgatccacattgcacc 210  Q
    |||||||| | |||||||||  |||||  || ||||||| ||||||||| |||||||||| ||||||||||||    
T  62255 tgtaagtgtagttcagattacgtaatccaaaatccttcagcataggattcttttgtatgaaccacattgcacc 62327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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