View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5742_low_18 (Length: 350)

Name: NF5742_low_18
Description: NF5742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5742_low_18
NF5742_low_18
[»] chr3 (4 HSPs)
chr3 (8-341)||(9787719-9788052)
chr3 (8-341)||(3589743-3590076)
chr3 (130-209)||(19607508-19607587)
chr3 (74-197)||(4576856-4576979)
[»] chr8 (5 HSPs)
chr8 (8-341)||(44506151-44506484)
chr8 (9-350)||(18176545-18176887)
chr8 (9-341)||(24956232-24956566)
chr8 (100-197)||(29564316-29564413)
chr8 (293-333)||(29564186-29564226)
[»] chr4 (5 HSPs)
chr4 (8-341)||(10012587-10012921)
chr4 (8-341)||(10019728-10020062)
chr4 (100-197)||(14641023-14641120)
chr4 (100-197)||(26110467-26110564)
chr4 (293-333)||(14640893-14640933)
[»] chr1 (2 HSPs)
chr1 (10-133)||(38318572-38318695)
chr1 (9-337)||(32604339-32604669)
[»] chr2 (3 HSPs)
chr2 (9-337)||(21023109-21023439)
chr2 (100-197)||(7230198-7230295)
chr2 (299-333)||(7230068-7230102)
[»] scaffold0005 (2 HSPs)
scaffold0005 (100-197)||(176172-176269)
scaffold0005 (293-333)||(176359-176399)
[»] chr5 (1 HSPs)
chr5 (124-196)||(6790379-6790451)


Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 8 - 341
Target Start/End: Original strand, 9787719 - 9788052
Alignment:
Q  8 catcatcagattcaataatttcatgagccacatctgcagtagtattttttccagtagactctaatggcacacccatagctggtgcccatgcacattgact 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  9787719 catcatcagattcaataatttcatgagccacatctgcagtagtattttttctaatagactctaatggcacacccatagctggtgcccatgcacattgact 9787818  T
Q  108 agttgccacaatctctccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcctgtgtaaccaat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9787819 agttgccacaatctctccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaattttgcatatttcacattctcctgtgtaaccaat 9787918  T
Q  208 aaaaataaataaaattgaggctatctaaattctcctatttattttcaatgaataaaatttaaagttcgtagtactaacccttatcttagcatcccaccaa 307  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9787919 aaaaataaataaaatttaggctatctaaattctcctatttattttcaatgaataaaatttaaagttcgtagtactaacccttatcttagcatcccaccaa 9788018  T
Q  308 gcagaatcagcatcaatatttcctatctgatgat 341  Q
    ||||||||||||||||||||||||||||||||||    
T  9788019 gcagaatcagcatcaatatttcctatctgatgat 9788052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 341
Target Start/End: Complemental strand, 3590076 - 3589743
Alignment:
Q  8 catcatcagattcaataatttcatgagccacatctgcagtagtattttttccagtagactctaatggcacacccatagctggtgcccatgcacattgact 107  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3590076 catcatcagattcaataatttcatgggccacatctgtggtagtattttttccagcagactctaatggcacacccatagctggtgcccatgcacattgact 3589977  T
Q  108 agttgccacaatctctccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcctgtgtaaccaat 207  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3589976 agttgccacaatctctccaaatatgaattccaattcatctcgaaatttcaaaccttgaaatcgaaatttcgcatatttcacattctcctgtgtaaccaat 3589877  T
Q  208 aaaaataaataaaattgaggctatctaaattctcctatttattttcaatgaataaaatttaaagttcgtagtactaacccttatcttagcatcccaccaa 307  Q
    |||| || |||||||| |||||||||||||||||||| ||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  3589876 aaaattagataaaatttaggctatctaaattctcctacttactttcaatgaataaaaattaaagttcatagtactaacccttatcttagcatcccaccaa 3589777  T
Q  308 gcagaatcagcatcaatatttcctatctgatgat 341  Q
    ||||||||| ||||||||||||||||||||||||    
T  3589776 gcagaatcaacatcaatatttcctatctgatgat 3589743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 19607508 - 19607587
Alignment:
Q  130 atgaattccaattcatcacgaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcctgtgtaaccaataa 209  Q
    |||||||| ||||||||||||||||| || |||||||| |||||||| | |||||| |||||||| ||  ||||||||||    
T  19607508 atgaattctaattcatcacgaaattctaatccttgaaaacgaaattttgaatattttacattctcgtgcataaccaataa 19607587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 197
Target Start/End: Original strand, 4576856 - 4576979
Alignment:
Q  74 gcacacccatagctggtgcccatgcacattgactagttgccacaatctctccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaa 173  Q
    |||| |||| |||||||| ||||   ||||| || |||||||||||||| |||||||| |||| |||||| || | ||||||||| ||||||  | ||||    
T  4576856 gcacccccaaagctggtgtccattggcattggcttgttgccacaatctccccaaatataaatttcaattcctcgcaaaattccaatccttgactttgaaa 4576955  T
Q  174 tttcgcatatttcacattctcctg 197  Q
     ||  |||| ||||||||||||||    
T  4576956 attttcatagttcacattctcctg 4576979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 8 - 341
Target Start/End: Complemental strand, 44506484 - 44506151
Alignment:
Q  8 catcatcagattcaataatttcatgagccacatctgcagtagtattttttccagtagactctaatggcacacccatagctggtgcccatgcacattgact 107  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44506484 catcatcagattcaataatttcacgagccacatctgcagtagtattttttccagtagactctaatggcacacccatagctggtgcacatgcacattgact 44506385  T
Q  108 agttgccacaatctctccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcctgtgtaaccaat 207  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  44506384 agttgccacaatctctccaaatatgaattccaattcatcacaaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcatgtgtaaccaat 44506285  T
Q  208 aaaaataaataaaattgaggctatctaaattctcctatttattttcaatgaataaaatttaaagttcgtagtactaacccttatcttagcatcccaccaa 307  Q
    ||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  44506284 aaaaatagataaaatttaggctatctaaattctcctatttactttcaatgaataaaaattaaagttcatagtactaacccttatcttagcatcccaccaa 44506185  T
Q  308 gcagaatcagcatcaatatttcctatctgatgat 341  Q
    |||||||||||||||||||||||||| |||||||    
T  44506184 gcagaatcagcatcaatatttcctatatgatgat 44506151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 9 - 350
Target Start/End: Original strand, 18176545 - 18176887
Alignment:
Q  9 atcatcagattcaataatttcatgagccacatctgcagtagtattttttccagtagactctaatggcacacccatagctggtgcccatgcacattgacta 108  Q
    |||||| || ||||| ||||| || | |||||||| |||||||||||| ||| || | || ||||||||||||| ||| |||| ||||   | ||||||     
T  18176545 atcatcggagtcaattatttcttgtggcacatctgtagtagtatttttgccactacaatcaaatggcacacccaaagcaggtgaccattggcgttgactt 18176644  T
Q  109 gttgccacaatctctccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcctgtgtaaccaata 208  Q
    |||||||     ||||||||||||| || || ||||||| ||||||| ||||||||| | |||||||| |||||||| |||||||||||  |||||||||    
T  18176645 gttgccattgcatctccaaatatgattttcagttcatcatgaaattctaaaccttgatagcgaaattttgcatatttgacattctcctgcataaccaata 18176744  T
Q  209 aaaataaataaaattgaggctatctaaattctcctatt-tattttcaatgaat-aaaatttaaagttcgtagtactaacccttatcttagcatcccacca 306  Q
    | || |||||| ||| || | | | ||||| || ||||  ||||||| || || |||||| ||  ||  || |||| |  ||||||||||||||| ||||    
T  18176745 acaagaaataatattcagacaaaccaaattatcttattcaattttcactggataaaaattcaatatttataatactcagtcttatcttagcatcctacca 18176844  T
Q  307 agcagaatcagcatcaatatttcctatctgatgatgtccatctc 350  Q
     | || |||| ||||||||||||||||||| |||| ||||||||    
T  18176845 tgaagcatcaacatcaatatttcctatctggtgat-tccatctc 18176887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 341
Target Start/End: Complemental strand, 24956566 - 24956232
Alignment:
Q  9 atcatcagattcaataatttcatgagccacatctgcagtagtattttttccagtagactctaatggcacacccatagctggtgcccatgcacattgacta 108  Q
    ||||||||| ||||| ||||| || | |||||||| ||||||||||||  || |||| || ||||| ||||||| ||| |||| || |   | ||||||     
T  24956566 atcatcagagtcaattatttcttgtggcacatctgtagtagtatttttgtcactagattcaaatggtacacccaaagcaggtgaccgttggcgttgactt 24956467  T
Q  109 gttgccacaatctctccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcctgtgtaaccaata 208  Q
    ||||||||    || |||||||||||||||| ||||||||||||||| ||||||||| | |||||||| |||||||| |||||| ||||  |||| ||||    
T  24956466 gttgccactgcatccccaaatatgaattccagttcatcacgaaattctaaaccttgatagcgaaattttgcatattttacattcccctgcataacgaata 24956367  T
Q  209 aaaataaataaaattgaggctatctaaattctcctatt-tattttcaatgaat-aaaatttaaagttcgtagtactaacccttatcttagcatcccacca 306  Q
    | || ||||||  || || | | | |||||||| ||||  |||||||  | || |||| | ||  || |||  ||| || ||||||||||||||||||||    
T  24956366 acaagaaataatgttcagacaaaccaaattctcttattcaattttcacgggataaaaaatcaatatttgtaacactcactcttatcttagcatcccacca 24956267  T
Q  307 agcagaatcagcatcaatatttcctatctgatgat 341  Q
     | || |||| ||||||||||||||||||| ||||    
T  24956266 tgaagcatcaacatcaatatttcctatctggtgat 24956232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 197
Target Start/End: Complemental strand, 29564413 - 29564316
Alignment:
Q  100 cattgactagttgccacaatctctccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcctg 197  Q
    |||||||| |||| |||||||||||||||||| |||| |||||| |||||||||| ||| | ||||  | ||||||| ||||||||||||||||||||    
T  29564413 cattgacttgttgtcacaatctctccaaatataaatttcaattcctcacgaaatttcaatctttgactttgaaattttgcatatttcacattctcctg 29564316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 333
Target Start/End: Complemental strand, 29564226 - 29564186
Alignment:
Q  293 ttagcatcccaccaagcagaatcagcatcaatatttcctat 333  Q
    ||||| ||||||||||||| |||| ||||||||||||||||    
T  29564226 ttagcctcccaccaagcaggatcatcatcaatatttcctat 29564186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 8 - 341
Target Start/End: Original strand, 10012587 - 10012921
Alignment:
Q  8 catcatcagattcaataatttcatgagccacatctgcagtagtattttttcc-agtagactctaatggcacacccatagctggtgcccatgcacattgac 106  Q
    |||| |||||||||||||||||||| |||||||||||| ||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||    
T  10012587 catcgtcagattcaataatttcatgggccacatctgcaatagtatttttttctagtagactctaatggcacacccatagttggtgcccatgcacattgac 10012686  T
Q  107 tagttgccacaatctctccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcctgtgtaaccaa 206  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10012687 tagttgccacaatctctccaaatatgaatttcaattcatcacgaaatttcaaaccttgaaatcgaaatttctcatatttcacattctcctgtgtaaccaa 10012786  T
Q  207 taaaaataaataaaattgaggctatctaaattctcctatttattttcaatgaataaaatttaaagttcgtagtactaacccttatcttagcatcccacca 306  Q
    |||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||| ||||||||||||| |||| |||||    
T  10012787 taaaaatagataaaatttaggctatctaaattctcctatttactttcaatgaataaaaattaaagttcatagtaccaacccttatcttatcatcgcacca 10012886  T
Q  307 agcagaatcagcatcaatatttcctatctgatgat 341  Q
    |||||||||| ||||||||||||||||||||||||    
T  10012887 agcagaatcaacatcaatatttcctatctgatgat 10012921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 8 - 341
Target Start/End: Original strand, 10019728 - 10020062
Alignment:
Q  8 catcatcagattcaataatttcatgagccacatctgcagtagtattttttcc-agtagactctaatggcacacccatagctggtgcccatgcacattgac 106  Q
    |||| |||||||||||||||||||| |||||||||||| ||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||    
T  10019728 catcgtcagattcaataatttcatgggccacatctgcaatagtatttttttctagtagactctaatggcacacccatagttggtgcccatgcacattgac 10019827  T
Q  107 tagttgccacaatctctccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcctgtgtaaccaa 206  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10019828 tagttgccacaatctctccaaatatgaatttcaattcatcacgaaatttcaaaccttgaaatcgaaatttctcatatttcacattctcctgtgtaaccaa 10019927  T
Q  207 taaaaataaataaaattgaggctatctaaattctcctatttattttcaatgaataaaatttaaagttcgtagtactaacccttatcttagcatcccacca 306  Q
    |||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||| ||||||||||||| |||| |||||    
T  10019928 taaaaatagataaaatttaggctatctaaattctcctatttactttcaatgaataaaaattaaagttcatagtaccaacccttatcttatcatcgcacca 10020027  T
Q  307 agcagaatcagcatcaatatttcctatctgatgat 341  Q
    |||||||||| ||||||||||||||||||||||||    
T  10020028 agcagaatcaacatcaatatttcctatctgatgat 10020062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 100 - 197
Target Start/End: Complemental strand, 14641120 - 14641023
Alignment:
Q  100 cattgactagttgccacaatctctccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcctg 197  Q
    |||||||| |||| |||||||||||||||||| |||| |||||| |||||||||||||| ||||||  | ||||||| ||||||||||||||||||||    
T  14641120 cattgacttgttgtcacaatctctccaaatataaatttcaattcctcacgaaattccaatccttgactttgaaattttgcatatttcacattctcctg 14641023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 100 - 197
Target Start/End: Complemental strand, 26110564 - 26110467
Alignment:
Q  100 cattgactagttgccacaatctctccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcctg 197  Q
    |||| ||| |||| |||||||||||||||||| |||| |||||| |||||||||||||| ||||||  | ||||||| ||||||||||||||||||||    
T  26110564 cattaacttgttgtcacaatctctccaaatataaatttcaattcctcacgaaattccaatccttgactttgaaattttgcatatttcacattctcctg 26110467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 333
Target Start/End: Complemental strand, 14640933 - 14640893
Alignment:
Q  293 ttagcatcccaccaagcagaatcagcatcaatatttcctat 333  Q
    ||||| ||||||||||||| ||||||||||| |||||||||    
T  14640933 ttagcctcccaccaagcaggatcagcatcaacatttcctat 14640893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 38318572 - 38318695
Alignment:
Q  10 tcatcagattcaataatttcatgagccacatctgcagtagtattttttccagtagactctaatggcacacccatagctggtgcccatgcacattgactag 109  Q
    |||| |||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  38318572 tcattagattcaataatttcatgcgccacatatgcagtagtattttttccagtagattctaatgtcacacccatagctggtgcccatgcacattgactag 38318671  T
Q  110 ttgccacaatctctccaaatatga 133  Q
    |||||| |||||| ||||||||||    
T  38318672 ttgccataatctccccaaatatga 38318695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 9 - 337
Target Start/End: Complemental strand, 32604669 - 32604339
Alignment:
Q  9 atcatcagattcaataatttcatgagccacatctgcagtagtattttttccagtagactctaatggcacacccatagctggtgcccatgcacattgacta 108  Q
    ||||||||| ||||| ||||| || | ||||| || |||||||||||| ||| |||| |||||||||||||||| ||| |||| ||||     ||||||     
T  32604669 atcatcagagtcaattatttcttgtggcacatttgtagtagtatttttgccattagattctaatggcacacccaaagccggtgtccattggtgttgactt 32604570  T
Q  109 gttgccacaatctctccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcctgtgtaaccaata 208  Q
    ||||||||    || | | |||||||||||||||||||| |||| |||||||||||| | ||||||||   |||||| |||||||||||  |||||||||    
T  32604569 gttgccactgcatccctatatatgaattccaattcatcaagaaactccaaaccttgataacgaaattttaaatattttacattctcctgcataaccaata 32604470  T
Q  209 aaaataaataaaattgaggctatctaaattctcctattta-ttttcaatgaataaaatttaaag-ttcgtagtactaacccttatcttagcatcccacca 306  Q
    | || ||| || ||| | |  | | ||||||| ||||| | ||||||  | |||||| |||||  ||  || |||| |||||||||||||||||||||||    
T  32604469 acaagaaaaaatatttatgaaaacgaaattctactattcaattttcacaggataaaagttaaatatttataatactcacccttatcttagcatcccacca 32604370  T
Q  307 agcagaatcagcatcaatatttcctatctga 337  Q
     | || |||||||||||||||||||||||||    
T  32604369 tgaagcatcagcatcaatatttcctatctga 32604339  T

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Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 337
Target Start/End: Original strand, 21023109 - 21023439
Alignment:
Q  9 atcatcagattcaataatttcatgagccacatctgcagtagtattttttccagtagactctaatggcacacccatagctggtgcccatgcacattgacta 108  Q
    ||||||||| ||||| ||||| || | ||||| || |||||||||||| ||| |||| |||||||||||||||| ||| |||| ||||     ||||||     
T  21023109 atcatcagagtcaattatttcttgtggcacatttgtagtagtatttttgccattagattctaatggcacacccaaagccggtgtccattggtgttgactt 21023208  T
Q  109 gttgccacaatctctccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcctgtgtaaccaata 208  Q
    ||||||||    || | | |||||||||||||||||||| |||| |||||||||||| | ||||||||   |||||| |||||||||||  |||||||||    
T  21023209 gttgccactgcatccctatatatgaattccaattcatcaagaaactccaaaccttgataacgaaattttaaatattttacattctcctgcataaccaata 21023308  T
Q  209 aaaataaataaaattgaggctatctaaattctcctatt-tattttcaatgaataaaatttaaa-gttcgtagtactaacccttatcttagcatcccacca 306  Q
    | || ||| || ||| | |  | | ||||||| |||||  |||||||  |||||||| |||||  ||  || |||| | ||||||||||||||||||| |    
T  21023309 acaagaaaaaatatttatgaaaacgaaattctactattcaattttcacagaataaaaattaaatatttataatactcagccttatcttagcatcccacga 21023408  T
Q  307 agcagaatcagcatcaatatttcctatctga 337  Q
     | |  |||||||||||||||||||||||||    
T  21023409 tgaaacatcagcatcaatatttcctatctga 21023439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 100 - 197
Target Start/End: Complemental strand, 7230295 - 7230198
Alignment:
Q  100 cattgactagttgccacaatctctccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcctg 197  Q
    |||||||| |||| |||||||||||||||||| |||| |||||| |||||||||| ||| ||||||  | ||||||| ||||||||||||||||||||    
T  7230295 cattgacttgttgtcacaatctctccaaatataaatttcaattcctcacgaaatttcaatccttgactttgaaattttgcatatttcacattctcctg 7230198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 333
Target Start/End: Complemental strand, 7230102 - 7230068
Alignment:
Q  299 tcccaccaagcagaatcagcatcaatatttcctat 333  Q
    ||||||||||||| |||||||||||||||||||||    
T  7230102 tcccaccaagcaggatcagcatcaatatttcctat 7230068  T

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Target: scaffold0005 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 100 - 197
Target Start/End: Original strand, 176172 - 176269
Alignment:
Q  100 cattgactagttgccacaatctctccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcctg 197  Q
    |||||||| |||| |||||||||||||||||| |||| |||||| |||||||||||||| ||||||  | ||||||| ||||||||||||||||||||    
T  176172 cattgacttgttgtcacaatctctccaaatataaatttcaattcctcacgaaattccaatccttgactttgaaattttgcatatttcacattctcctg 176269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 333
Target Start/End: Original strand, 176359 - 176399
Alignment:
Q  293 ttagcatcccaccaagcagaatcagcatcaatatttcctat 333  Q
    ||||| ||||||||||||| ||||||||||| |||||||||    
T  176359 ttagcctcccaccaagcaggatcagcatcaacatttcctat 176399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 6790451 - 6790379
Alignment:
Q  124 ccaaatatgaattccaattcatcacgaaattccaaaccttgaaatcgaaatttcgcatatttcacattctcct 196  Q
    |||||||||  |||||| |||||||||||||| || |||||| |||||||| | ||| ||||  |||||||||    
T  6790451 ccaaatatgtgttccaactcatcacgaaattctaatccttgatatcgaaatcttgcaaattttgcattctcct 6790379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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