View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5742_low_27 (Length: 312)

Name: NF5742_low_27
Description: NF5742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5742_low_27
NF5742_low_27
[»] chr5 (4 HSPs)
chr5 (21-312)||(18313488-18313778)
chr5 (19-184)||(34378170-34378336)
chr5 (22-184)||(698433-698596)
chr5 (20-184)||(18593315-18593480)
[»] chr3 (13 HSPs)
chr3 (21-184)||(31482956-31483119)
chr3 (20-184)||(34475600-34475763)
chr3 (19-194)||(47235761-47235936)
chr3 (20-194)||(45163918-45164092)
chr3 (20-194)||(20611846-20612019)
chr3 (20-194)||(2392350-2392524)
chr3 (20-175)||(53247981-53248138)
chr3 (20-184)||(17551029-17551189)
chr3 (20-147)||(2394114-2394242)
chr3 (19-192)||(43012440-43012613)
chr3 (17-192)||(19176567-19176744)
chr3 (20-95)||(30352285-30352359)
chr3 (74-194)||(40023472-40023590)
[»] chr7 (13 HSPs)
chr7 (11-184)||(47325720-47325894)
chr7 (20-184)||(5860132-5860297)
chr7 (19-184)||(44353406-44353573)
chr7 (42-184)||(37795061-37795204)
chr7 (20-184)||(38306333-38306498)
chr7 (21-184)||(3419500-3419665)
chr7 (20-184)||(10244254-10244419)
chr7 (20-194)||(25160878-25161048)
chr7 (20-125)||(31971978-31972084)
chr7 (74-175)||(33435191-33435291)
chr7 (19-126)||(3867246-3867354)
chr7 (74-194)||(34390025-34390143)
chr7 (42-192)||(41089614-41089764)
[»] chr2 (4 HSPs)
chr2 (20-184)||(10524173-10524337)
chr2 (20-184)||(39338709-39338874)
chr2 (20-184)||(17116723-17116889)
chr2 (20-169)||(387262-387411)
[»] chr8 (12 HSPs)
chr8 (19-184)||(20138498-20138665)
chr8 (20-184)||(9519571-9519737)
chr8 (21-184)||(12898120-12898283)
chr8 (20-183)||(31207206-31207370)
chr8 (20-184)||(37986702-37986867)
chr8 (20-184)||(24995238-24995404)
chr8 (20-184)||(32066139-32066304)
chr8 (20-184)||(41893246-41893410)
chr8 (78-184)||(16457364-16457470)
chr8 (22-184)||(34388852-34389014)
chr8 (74-153)||(22773602-22773681)
chr8 (87-184)||(36630909-36631006)
[»] chr1 (9 HSPs)
chr1 (20-194)||(24449774-24449948)
chr1 (20-184)||(46692663-46692828)
chr1 (20-184)||(5459233-5459398)
chr1 (25-184)||(31585608-31585769)
chr1 (22-183)||(41920525-41920692)
chr1 (69-183)||(30685798-30685912)
chr1 (20-184)||(5389266-5389430)
chr1 (19-149)||(6764224-6764355)
chr1 (87-191)||(24684390-24684493)
[»] chr4 (5 HSPs)
chr4 (20-184)||(8255099-8255264)
chr4 (20-184)||(8268517-8268682)
chr4 (88-184)||(30964513-30964609)
chr4 (24-184)||(30167412-30167573)
chr4 (30-184)||(4305797-4305951)
[»] scaffold0343 (1 HSPs)
scaffold0343 (20-184)||(5777-5943)
[»] scaffold0068 (1 HSPs)
scaffold0068 (42-194)||(35640-35790)
[»] chr6 (2 HSPs)
chr6 (21-184)||(3117565-3117729)
chr6 (20-121)||(10541967-10542069)


Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 21 - 312
Target Start/End: Original strand, 18313488 - 18313778
Alignment:
Q  21 catcgtcactactcacccatgaagaacaccctaaagaaaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatgatc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  18313488 catcgtcactactcacccatgaagaacaccctaaagaaaaactccaaaatcctaaaacccaaactaagccacatttcgaagagcacctaaacgaatgatc 18313587  T
Q  121 atgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaag-cccaaaaaaccaacttaaagtttatttcagttttcgttttcga 219  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||| ||    
T  18313588 atgcagctatcacaaacctcgcgaccttcaatccaccgaaagagtacaacacaaagtccaaaaaaaccaactt-aagtttatttcagttttcgtttttga 18313686  T
Q  220 gaggttcacagtcttgttatgagaaaaataataataattagattctttaaaatattcttcaataatacttgtgttatattagtgcaatatttt 312  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||   |||||||||  || |||||||||||    
T  18313687 gaggttcacagtcttgttatgag-aaaataataataattagattctttaaaatattcttcaataaagtttgtgttatgataatgcaatatttt 18313778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 34378336 - 34378170
Alignment:
Q  19 tccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatg 117  Q
    |||||||||||||||||||||  ||||||||||| || | |||||||  ||| || |||||||||||| ||||||||| ||||||||| |||| |||| |    
T  34378336 tccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcaaaccccaacacccaagctgagccacattacgaagagcatctaaccgaagg 34378237  T
Q  118 atcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 184  Q
    ||||  || ||||||||||||||||||||| |  || |||||||||| |||| ||||||||||||||    
T  34378236 atcaaacaactatcacaaacctcgcgacctccggtccaccgaaagagcacaaaacaaagcccaaaaa 34378170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 184
Target Start/End: Complemental strand, 698596 - 698433
Alignment:
Q  22 atcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatgatc 120  Q
    ||||||||||||||||||  |||||||||||  | | |||||||  | | || |||||||||||| ||||||||||| |||||||||||| |||| |||     
T  698596 atcgtcactactcacccacaaagaacaccctccaaataaaactctcagaccccaacacccaagctgagccacatttcaaagagcacctaaccgaaggatt 698497  T
Q  121 atgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 184  Q
    |||||||||||||||||||||| ||||   | | || |||||||||||||||||||||||||||    
T  698496 atgcagctatcacaaacctcgcaacctctgaaccacagaaagagtacaacacaaagcccaaaaa 698433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 18593480 - 18593315
Alignment:
Q  20 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatga 118  Q
    ||||||||||||||||||||  ||||||| |||  | | |||||||| | | || |||||||||| | |||||||||||||||| ||||||| |||| ||    
T  18593480 ccatcgtcactactcacccacaaagaacatcctccaaataaaactcccagaccccaacacccaagttgagccacatttcgaagaacacctaaccgaagga 18593381  T
Q  119 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 184  Q
    ||||||| |||||||||| |||||||||| | | | |||||||||| ||||||| |||||||||||    
T  18593380 tcatgcacctatcacaaatctcgcgacctccgaaccaccgaaagagcacaacactaagcccaaaaa 18593315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 31483119 - 31482956
Alignment:
Q  21 catcgtcactactcacccatgaagaacaccctaaagaaaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatgatc 120  Q
    ||||||||||||| |||||  ||||||||||| || ||||||||  ||| || |||||| ||||| |||||||||||||||||||||||| |||| ||||    
T  31483119 catcgtcactactaacccacaaagaacacccttaaaaaaaactctcaaaccccaacacctaagctgagccacatttcgaagagcacctaaccgaaggatc 31483020  T
Q  121 atgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 184  Q
    ||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||    
T  31483019 atgcagctatcacaaacctcgcgacctccaatccaccgaaagagcacaacacaaagcccaaaaa 31482956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 34475600 - 34475763
Alignment:
Q  20 ccatcgtcactactcacccatgaagaacaccctaaagaaaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatgat 119  Q
    ||||||||||||||||||||  ||||||||||| || ||||||||  | | || |||||| ||||| || ||||||||||||||||||||| |||| |||    
T  34475600 ccatcgtcactactcacccacaaagaacacccttaa-aaaaactctcataccccaacacctaagctgagtcacatttcgaagagcacctaaccgaaggat 34475698  T
Q  120 catgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 184  Q
    ||| |||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||    
T  34475699 catacagctatcacaaacctcgcgacctccaatccaccgaaagagcacaacacaaagcccaaaaa 34475763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 47235936 - 47235761
Alignment:
Q  19 tccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatg 117  Q
    |||||||||||||||||||||  ||||||||||| || | |||||||  | | || |||||||||||| | |||||||||||||||||||||| |||| |    
T  47235936 tccatcgtcactactcacccacaaagaacaccctcaaaataaaactcgcagaccccaacacccaagctgaaccacatttcgaagagcacctaaccgaagg 47235837  T
Q  118 atcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaaaccaacttaa 194  Q
    ||||||||||||||||||||||||||||||   ||| |||||||||| | ||||||||||||| |||||||||||||    
T  47235836 atcatgcagctatcacaaacctcgcgacctctgatccaccgaaagagcaaaacacaaagccca-aaaaccaacttaa 47235761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 45164092 - 45163918
Alignment:
Q  20 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatga 118  Q
    |||||||||||| ||||| |  || |||||||| || | |||||||| | | || ||||||||||||||||||||||||||||||||||||| |||| ||    
T  45164092 ccatcgtcactaatcacctacaaataacaccctcaaaataaaactcctagaccccaacacccaagctaagccacatttcgaagagcacctaaccgaagga 45163993  T
Q  119 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaaaccaacttaa 194  Q
    ||||||||||||||||||| ||| ||||| | ||| |||||||||| ||||||||||||||| |||||||||||||    
T  45163992 tcatgcagctatcacaaacttcgtgacctccgatccaccgaaagagcacaacacaaagccca-aaaaccaacttaa 45163918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 20612019 - 20611846
Alignment:
Q  20 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatga 118  Q
    ||||||||||||||||||||  ||||||||||| |  | |||||||| | | || |||||||||||| || ||||||||||||||||||||| |||| ||    
T  20612019 ccatcgtcactactcacccacaaagaacaccctcagaataaaactcctagaccc-aacacccaagctgagtcacatttcgaagagcacctaaccgaagga 20611921  T
Q  119 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaaaccaacttaa 194  Q
    |||| |||||||||||||||||||||||| | ||| |||||||||| ||||| ||||||||| |||||||||||||    
T  20611920 tcattcagctatcacaaacctcgcgacctccgatccaccgaaagagcacaacgcaaagccca-aaaaccaacttaa 20611846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 2392350 - 2392524
Alignment:
Q  20 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatga 118  Q
    ||||||||||||||||||||  || ||||||   || | |||||||| | | || |||||||||||| |||||||||| ||||||  ||||| |||| ||    
T  2392350 ccatcgtcactactcacccacaaataacacctacaaaataaaactcctagaccccaacacccaagctgagccacattttgaagagatcctaaccgaagga 2392449  T
Q  119 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaaaccaacttaa 194  Q
    ||||||||||| ||||||||||||||||| | ||| |||||||||| |||||||||||||| ||||||||||||||    
T  2392450 tcatgcagctagcacaaacctcgcgacctccgatccaccgaaagagcacaacacaaagccc-aaaaaccaacttaa 2392524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 53248138 - 53247981
Alignment:
Q  20 ccatcgtcactactcacccatgaagaacaccct--aaagaaaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatg 117  Q
    ||||||||||||||||||||  |||||||| ||  ||| ||||||||  | | || ||||||||| || |||||||||||||||||||| ||| |||| |    
T  53248138 ccatcgtcactactcacccacaaagaacactctcaaaataaaaactctcagaccccaacacccaaactgagccacatttcgaagagcacataaccgaagg 53248039  T
Q  118 atcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaa 175  Q
    ||||| || ||||||||||||||||||||| ||||| |||||||||| ||||||||||    
T  53248038 atcatacaactatcacaaacctcgcgacctccaatccaccgaaagagcacaacacaaa 53247981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 17551189 - 17551029
Alignment:
Q  20 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatga 118  Q
    |||||||||||||||||| |  ||||||||||| || | |||||||  | | || ||||||||| || |||||||||||||||||||||||| |     |    
T  17551189 ccatcgtcactactcaccgacaaagaacaccctcaaaataaaactctcagaccccaacacccaaactgagccacatttcgaagagcacctaacc-----a 17551095  T
Q  119 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 184  Q
    ||||||||||||||||||||||||||||| | ||  | |||||||| |||||||||||||||||||    
T  17551094 tcatgcagctatcacaaacctcgcgacctccgatgcatcgaaagagcacaacacaaagcccaaaaa 17551029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 2394114 - 2394242
Alignment:
Q  20 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatga 118  Q
    ||||||||||||||||||||  || ||||||   || | |||||||| | | || |||||||||||| |||||||||| ||||||  ||||| |||| ||    
T  2394114 ccatcgtcactactcacccacaaataacacctacaaaataaaactcctagaccccaacacccaagctgagccacattttgaagagatcctaaccgaagga 2394213  T
Q  119 tcatgcagctatcacaaacctcgcgacct 147  Q
    ||||||||||| |||||||||||||||||    
T  2394214 tcatgcagctagcacaaacctcgcgacct 2394242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 43012613 - 43012440
Alignment:
Q  19 tccatcgtcactactcacccatgaagaacaccct-aaagaaaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatg 117  Q
    ||||||| |||||||||||    ||||||||||| |||  |||||||| | | || |||||||||||| |||||||||||||||||||||| | |||| |    
T  43012613 tccatcgccactactcacctccaaagaacaccctcaaattaaaactcctagaccccaacacccaagctgagccacatttcgaagagcacctgaccgaacg 43012514  T
Q  118 atcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaaaccaactt 192  Q
    |||||||| ||  ||| |||||||||||||   ||  |||||||||| |||| |||||  |  ||||||||||||    
T  43012513 atcatgcaacttccac-aacctcgcgacctctgattcaccgaaagagcacaaaacaaaagctcaaaaaccaactt 43012440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 19176744 - 19176567
Alignment:
Q  17 catccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacg-- 113  Q
    |||||||||||||||||||||| | ||||||||||| || | ||||| || | | ||  ||||||||||| ||||||||| |||||||||||| | ||      
T  19176744 catccatcgtcactactcacccctaaagaacaccctcaaaataaaacacccagaccccgacacccaagctgagccacattacgaagagcacctgaccgaa 19176645  T
Q  114 aatgatcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaaaccaactt 192  Q
    || ||||||||||||  ||| ||||| ||||||| | ||| ||| |||||| ||||  ||||  || ||||||||||||    
T  19176644 aaggatcatgcagcttccac-aaccttgcgacctccgatccaccaaaagagcacaaatcaaaagcccaaaaaccaactt 19176567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 30352285 - 30352359
Alignment:
Q  20 ccatcgtcactactcacccatgaagaacaccctaaagaaaaactccaaaatcctaacacccaagctaagccacatt 95  Q
    |||||||||||||||| |||  |||||||||||||| ||||||||| | | || |||||||||||| |||||||||    
T  30352285 ccatcgtcactactcatccacaaagaacaccctaaa-aaaaactccgagaccccaacacccaagctgagccacatt 30352359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 194
Target Start/End: Original strand, 40023472 - 40023590
Alignment:
Q  74 aacacccaagctaagccacatttcgaagagcacctaaacgaatgatcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacaca 173  Q
    ||||||| |||| ||||||||| |||| ||| ||||| ||||||| |||||||||  ||||| |||| || |||   ||| |||||||||| |||| |||    
T  40023472 aacaccctagctgagccacatt-cgaaaagctcctaaccgaatgaacatgcagcttccacaa-cctcccgtcctctgatccaccgaaagagcacaaaaca 40023569  T
Q  174 aagcccaaaaaaccaacttaa 194  Q
    ||  || ||||||||||||||    
T  40023570 aaagcccaaaaaccaacttaa 40023590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 47325720 - 47325894
Alignment:
Q  11 catcatcatccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcaccta 109  Q
    |||||||  ||||||||||||||||||||  ||||||||||| || | |||||||| | | || |||||||||||| |||||||||||||||||||||||    
T  47325720 catcatcgcccatcgtcactactcacccacaaagaacaccctcaaaataaaactcccagaccccaacacccaagctgagccacatttcgaagagcaccta 47325819  T
Q  110 aacgaatgatcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 184  Q
    | |||| |||||| |||||||||||||||||||||||| | ||| | |||||||| ||| |||||||||||||||    
T  47325820 accgaaggatcattcagctatcacaaacctcgcgacctccgatccatcgaaagagcacagcacaaagcccaaaaa 47325894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 5860132 - 5860297
Alignment:
Q  20 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatga 118  Q
    |||||||||||||||| |||  ||||||||||| || | |||||||| | | || |||||||||||| ||||||||||||||||||||||||  ||| ||    
T  5860132 ccatcgtcactactcatccacaaagaacaccctgaaaataaaactcccagaccccaacacccaagctgagccacatttcgaagagcacctaactgaagga 5860231  T
Q  119 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 184  Q
    ||||||||||||||||||||||||||||| | | | |||||||||| |||||||||||||||||||    
T  5860232 tcatgcagctatcacaaacctcgcgacctccgaaccaccgaaagagcacaacacaaagcccaaaaa 5860297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 184
Target Start/End: Original strand, 44353406 - 44353573
Alignment:
Q  19 tccatcgtcactactcacccatgaagaacaccctaaagaa--aaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaat 116  Q
    ||||||||||||||||||| |  ||||||||||| || ||  ||||||| | | || |||||||||||   | ||||||||||||||||||||| ||||     
T  44353406 tccatcgtcactactcacctacaaagaacaccctcaaaaataaaactcccagaccccaacacccaagccgggtcacatttcgaagagcacctaaccgaag 44353505  T
Q  117 gatcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 184  Q
    ||||||||||||||||||||||||||||||| | ||| |||||||||| |||||||||||||||||||    
T  44353506 gatcatgcagctatcacaaacctcgcgacctccgatccaccgaaagagcacaacacaaagcccaaaaa 44353573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 42 - 184
Target Start/End: Complemental strand, 37795204 - 37795061
Alignment:
Q  42 aagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatgatcatgcagctatcacaaacctc 140  Q
    ||||||||||| || | |||||||  ||| || |||||||||||| ||||||| |||||||||||||||| |||| ||||||||||||||||||||||||    
T  37795204 aagaacaccctcaaaataaaactctcaaaccccaacacccaagctgagccacagttcgaagagcacctaaccgaaggatcatgcagctatcacaaacctc 37795105  T
Q  141 gcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 184  Q
    ||||||| | | | |||||||||| |||||||||||||||||||    
T  37795104 gcgacctccgaaccaccgaaagagcacaacacaaagcccaaaaa 37795061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 38306498 - 38306333
Alignment:
Q  20 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatga 118  Q
    |||||||||||||||||| |  ||||||||||| || | |||||||  | | || |||||||||||| |||||||| ||||||||||| ||| |||| ||    
T  38306498 ccatcgtcactactcacctacaaagaacaccctcaaaataaaactcacagaccccaacacccaagctgagccacatatcgaagagcacttaaccgaagga 38306399  T
Q  119 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 184  Q
    ||||||||||||||||||||||||||||| | | | | |||||||| |||||||||||||||||||    
T  38306398 tcatgcagctatcacaaacctcgcgacctccgaaccatcgaaagagcacaacacaaagcccaaaaa 38306333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 21 - 184
Target Start/End: Original strand, 3419500 - 3419665
Alignment:
Q  21 catcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatgat 119  Q
    |||||||||||||||| ||  ||||||||||| || | |||||||| ||| || |||||||||| ||||||||| ||||||| |||||||| |||| |||    
T  3419500 catcgtcactactcactcacaaagaacacccttaaaataaaactcccaaaccccaacacccaagttaagccacaattcgaagcgcacctaaccgaaggat 3419599  T
Q  120 catgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtaca-acacaaagcccaaaaa 184  Q
    || ||||||||||||||||| | |||||   ||| |||||||||| ||| | ||||||||||||||    
T  3419600 caagcagctatcacaaaccttgtgacctctgatccaccgaaagagcacagaaacaaagcccaaaaa 3419665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 10244419 - 10244254
Alignment:
Q  20 ccatcgtcactactcacccatgaagaacacccta-aagaaaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatga 118  Q
    ||||||||||||||||||||  |||| ||||||  ||  |||| ||| | | || |||||||||||| ||||||| ||| |||||||||||| |||| ||    
T  10244419 ccatcgtcactactcacccacaaagaccaccctccaactaaaaatcccagacccaaacacccaagctgagccacaattcaaagagcacctaaccgaagga 10244320  T
Q  119 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 184  Q
    ||||||| ||||||||||||||||||||| | | | || ||||||| ||||||||||| |||||||    
T  10244319 tcatgcaactatcacaaacctcgcgacctccgaaccactgaaagagcacaacacaaaggccaaaaa 10244254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 25161048 - 25160878
Alignment:
Q  20 ccatcgtcactactcacccatgaagaacaccctaaagaaaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatgat 119  Q
    ||||||||||||||||||||  ||||||||| | || ||||||||  | | || |||| | ||| | ||||||||||| ||||||||||||  ||| |||    
T  25161048 ccatcgtcactactcacccacaaagaacacctttaa-aaaaactctcagaccccaacatctaagttgagccacatttccaagagcacctaactgaaggat 25160950  T
Q  120 catgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaaaccaacttaa 194  Q
    ||  |||||||||||||||| | ||||| ||||| |||||||||| |||||||  ||||| ||||||||||||||    
T  25160949 cacacagctatcacaaaccttgagacctccaatccaccgaaagagcacaacac--agccc-aaaaaccaacttaa 25160878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 31971978 - 31972084
Alignment:
Q  20 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatga 118  Q
    ||||||||||||||||||||  |||||||||||  | | |||||||| | | || |||||||||||| |||||||||||||||||||||||| |||| ||    
T  31971978 ccatcgtcactactcacccacaaagaacaccctccaaataaaactcccagaccccaacacccaagctgagccacatttcgaagagcacctaaccgaagga 31972077  T
Q  119 tcatgca 125  Q
    |||||||    
T  31972078 tcatgca 31972084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 74 - 175
Target Start/End: Complemental strand, 33435291 - 33435191
Alignment:
Q  74 aacacccaagctaagccacatttcgaagagcacctaaacgaatgatcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacaca 173  Q
    |||| ||||||| ||||||| |||||||||||||| | |||| ||||||| |||| |||| ||||||||||||| | ||| |||||||||| |||| |||    
T  33435291 aacaaccaagctgagccacaattcgaagagcacctgaccgaaggatcatgtagctttcac-aacctcgcgacctccgatccaccgaaagagcacaaaaca 33435193  T
Q  174 aa 175  Q
    ||    
T  33435192 aa 33435191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 3867354 - 3867246
Alignment:
Q  19 tccatcgtcactactcacccatgaagaacaccct--aaagaaaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaat 116  Q
    ||||||||||||||||||||   |||||||||||  ||| ||||  |||| | ||| |||||||||||| |||||||| ||||||||||||| | | ||     
T  3867354 tccatcgtcactactcacccccaaagaacaccctcaaaataaaacttccatactcc-aacacccaagctgagccacatatcgaagagcacctgaccaaag 3867256  T
Q  117 gatcatgcag 126  Q
    ||||||||||    
T  3867255 gatcatgcag 3867246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 194
Target Start/End: Complemental strand, 34390143 - 34390025
Alignment:
Q  74 aacacccaagctaagccacatttcgaagagcacctaaacgaatgatcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacaca 173  Q
    |||||||||| | |||||||||| ||| ||| ||||| ||||||| |||||||||  ||||| |||| |||||| | ||| |||||||||| |||| | |    
T  34390143 aacacccaagttgagccacattt-gaaaagctcctaatcgaatgaacatgcagcttccacaa-cctctcgacctccgatccaccgaaagagcacaaaata 34390046  T
Q  174 aagcccaaaaaaccaacttaa 194  Q
    ||  || ||||||||||||||    
T  34390045 aaagcccaaaaaccaacttaa 34390025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 192
Target Start/End: Original strand, 41089614 - 41089764
Alignment:
Q  42 aagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatgatcatgcagctatcacaaacctc 140  Q
    ||||||||||| || | |||||||| | | |||||||||||   | ||| ||| |||||||||||||| ||||||  |||||||||||  ||| ||||||    
T  41089614 aagaacaccctcaaaataaaactcccagaccctaacacccatcttgagctacacttcgaagagcacctcaacgaagaatcatgcagcttccac-aacctc 41089712  T
Q  141 gcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaaaccaactt 192  Q
    ||||||| | ||| |||||||||  |||| |||||  |  ||||||||||||    
T  41089713 gcgacctccgatccaccgaaagatcacaaaacaaaagctcaaaaaccaactt 41089764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 10524337 - 10524173
Alignment:
Q  20 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatga 118  Q
    ||||||||||||||||||||  |||||||||||  | | |||||||| ||| || |||||||||||| |||||||| ||||||||||||||| |||| ||    
T  10524337 ccatcgtcactactcacccacaaagaacaccctccaaataaaactcccaaaccccaacacccaagctgagccacatatcgaagagcacctaaccgaagga 10524238  T
Q  119 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 184  Q
    ||||||||||||||||||||||||||||| | | | |||||||||| |||||||||||||||||||    
T  10524237 tcatgcagctatcacaaacctcgcgacctccgaac-accgaaagagcacaacacaaagcccaaaaa 10524173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 39338709 - 39338874
Alignment:
Q  20 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatga 118  Q
    ||||||||||||||||||||  ||||||||||| || | |||||||| | | |  |||||||||||| || |||| |||||||||||||||| |||| ||    
T  39338709 ccatcgtcactactcacccacaaagaacaccctcaaaataaaactcccagacctcaacacccaagctgagtcacaattcgaagagcacctaaccgaagga 39338808  T
Q  119 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 184  Q
    |||| |||||||||||||||||||||||| | ||| |||||||||| |||||||||||||||||||    
T  39338809 tcattcagctatcacaaacctcgcgacctccgatccaccgaaagagcacaacacaaagcccaaaaa 39338874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 17116723 - 17116889
Alignment:
Q  20 ccatcgtcactactcacccatgaagaacaccct--aaagaaaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatg 117  Q
    ||||||||| ||||||||||  |||||||||||  ||| ||||||||  | | || |||||||||||| ||||||||| |||||||||||||| |||  |    
T  17116723 ccatcgtcattactcacccacaaagaacaccctcaaaataaaaactctcagaccccaacacccaagctgagccacattacgaagagcacctaaccgatgg 17116822  T
Q  118 atcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 184  Q
    |||| | || |||||||||||||||||||| ||||||| ||||| || |||| |||||||| |||||    
T  17116823 atcaagtagatatcacaaacctcgcgacctccaatctatcgaaaaagcacaaaacaaagcctaaaaa 17116889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 387411 - 387262
Alignment:
Q  20 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatga 118  Q
    |||||||||||| ||||||   ||||||||||| || | |||||||| | | || |||||||||||| |||||| | ||||||||||||| |  ||||||    
T  387411 ccatcgtcactattcacccccaaagaacaccctcaaaataaaactcccagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatga 387312  T
Q  119 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaa 169  Q
     ||||||||| ||  |||||||| ||||| | ||| ||| |||||| ||||    
T  387311 acatgcagct-tccaaaacctcgtgacctccgatccaccaaaagagcacaa 387262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 20138665 - 20138498
Alignment:
Q  19 tccatcgtcactactcacccatgaagaacaccctaaagaa--aaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaat 116  Q
    ||||||||||||||||||| |  ||||||||||| || ||  ||||||| | | || |||||||||||   | ||||||||||||||||||||| ||||     
T  20138665 tccatcgtcactactcacctacaaagaacaccctcaaaaataaaactcccagaccccaacacccaagccgggtcacatttcgaagagcacctaaccgaag 20138566  T
Q  117 gatcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 184  Q
    ||||||||||||||||||||||||||||||| | ||| |||||||||| |||||||||||||||||||    
T  20138565 gatcatgcagctatcacaaacctcgcgacctccgatccaccgaaagagcacaacacaaagcccaaaaa 20138498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 9519737 - 9519571
Alignment:
Q  20 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactc-caaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatg 117  Q
    ||||||||||||||||||||  ||||||||||| || | ||||||| || |  || |||||||||||| ||||| |||||||||||||||||| ||||||    
T  9519737 ccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagacccccaacacccaagctgagccatatttcgaagagcacctaaccgaatg 9519638  T
Q  118 atcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 184  Q
    |||||||||||||||||||| |||| |||| | | | |||||||||| |||||||||||||||||||    
T  9519637 atcatgcagctatcacaaacttcgcaacctccgacccaccgaaagagcacaacacaaagcccaaaaa 9519571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 21 - 184
Target Start/End: Original strand, 12898120 - 12898283
Alignment:
Q  21 catcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatgat 119  Q
    |||||||||||||||||||  ||||||||||| || | ||||||| || | || |||||||||||| |||||||||||||||||||||||| |||| |||    
T  12898120 catcgtcactactcacccacaaagaacaccctcaaaataaaactctaagaccccaacacccaagctgagccacatttcgaagagcacctaaccgaaggat 12898219  T
Q  120 catgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 184  Q
    || ||||||||||||||||||||||||| | | | | |||||||| |||||||||||||| ||||    
T  12898220 ca-gcagctatcacaaacctcgcgacctccgaaccatcgaaagagcacaacacaaagccccaaaa 12898283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 20 - 183
Target Start/End: Original strand, 31207206 - 31207370
Alignment:
Q  20 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatga 118  Q
    ||||||||||||||||||||  ||||||||||| || | |||||||| | |  | |||||||||||| |||||||||||||||||||||||| |||| |     
T  31207206 ccatcgtcactactcacccacaaagaacaccctcaaaataaaactcccatactccaacacccaagctgagccacatttcgaagagcacctaaccgaaggg 31207305  T
Q  119 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaa 183  Q
    |||| |||||||||||||||||||||||| | ||| ||||||| || |||||||||| |||||||    
T  31207306 tcattcagctatcacaaacctcgcgacctccgatccaccgaaaaagcacaacacaaatcccaaaa 31207370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 37986702 - 37986867
Alignment:
Q  20 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatga 118  Q
    ||||||||| ||||||||||  |||||||||||  | | |||||||| | | |  |||||||||||| |||||||||||||||||||||||| |||| ||    
T  37986702 ccatcgtcattactcacccacaaagaacaccctccaaataaaactcccagaccgaaacacccaagctgagccacatttcgaagagcacctaaccgaagga 37986801  T
Q  119 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 184  Q
    ||| ||||||||||||||||||||||||| | | | |||||||||| |||||||||||| ||||||    
T  37986802 tcaggcagctatcacaaacctcgcgacctccgaaccaccgaaagagcacaacacaaagcacaaaaa 37986867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 24995238 - 24995404
Alignment:
Q  20 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcct-aacacccaagctaagccacatttcgaagagcacctaaacgaatg 117  Q
    ||||||||||||||||| ||  ||||||||||| || | |||||||| | | ||  |||||||||||| ||||| |||||||||||||||||| |||| |    
T  24995238 ccatcgtcactactcacgcacaaagaacaccctcaaaataaaactcctagacccccaacacccaagctgagccatatttcgaagagcacctaaccgaagg 24995337  T
Q  118 atcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 184  Q
    ||||||||||||||||||||||||||||||   | | || ||||||| |||||||||||||||||||    
T  24995338 atcatgcagctatcacaaacctcgcgacctctgacccactgaaagagcacaacacaaagcccaaaaa 24995404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 32066139 - 32066304
Alignment:
Q  20 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatga 118  Q
    ||||||||||||||||| ||  |||||||||||  | | |||||||  | | || |||||||||||| | ||||||||| ||||||| |||| |||||||    
T  32066139 ccatcgtcactactcactcacaaagaacaccctccaaataaaactctcagaccccaacacccaagctgaaccacatttcaaagagcatctaaccgaatga 32066238  T
Q  119 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 184  Q
    |||||||||||||||||||||||| ||||   | | |||||||||| |||||||||||||||||||    
T  32066239 tcatgcagctatcacaaacctcgcaacctctgaaccaccgaaagagcacaacacaaagcccaaaaa 32066304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 41893246 - 41893410
Alignment:
Q  20 ccatcgtcactactcacccatgaagaacaccctaaagaaa-aactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatga 118  Q
    ||||||||||||||||||||  ||||||||||| || | | |||||| | | |  |||||||||||| ||||||||||||||||| ||||| | ||| ||    
T  41893246 ccatcgtcactactcacccacaaagaacaccctgaaaatagaactcccagacctcaacacccaagctgagccacatttcgaagagtacctata-gaagga 41893344  T
Q  119 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 184  Q
    ||||||||||||||||||||| |||||||   | | ||| |||||| |||||||||||||||||||    
T  41893345 tcatgcagctatcacaaaccttgcgacctcttaaccaccaaaagagcacaacacaaagcccaaaaa 41893410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 16457364 - 16457470
Alignment:
Q  78 cccaagctaagccacatttcgaagagcacctaaacgaatgatcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagc 177  Q
    |||||||| ||||||||||| |||||||||||| |  | |||||||||||||||||||||||| |||| | | | | |||||||||| ||||||||||||    
T  16457364 cccaagctgagccacatttcaaagagcacctaaccacaagatcatgcagctatcacaaacctcacgacatccgaaccaccgaaagagcacaacacaaagc 16457463  T
Q  178 ccaaaaa 184  Q
    | |||||    
T  16457464 ctaaaaa 16457470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 184
Target Start/End: Original strand, 34388852 - 34389014
Alignment:
Q  22 atcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatgatc 120  Q
    ||||||||||||||||||  ||||||||||| || | |||||||  | | || |||||||||||| ||||||||   ||||| |||||||  ||| ||||    
T  34388852 atcgtcactactcacccacaaagaacaccctcaaaataaaactctcataccccaacacccaagctgagccacatgatgaagaacacctaactgaaggatc 34388951  T
Q  121 atgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 184  Q
    |   |||||||||||||||| |||||| | ||| ||||||| || |||||||||||||||||||    
T  34388952 act-agctatcacaaacctcacgacctacgatccaccgaaatagcacaacacaaagcccaaaaa 34389014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 74 - 153
Target Start/End: Complemental strand, 22773681 - 22773602
Alignment:
Q  74 aacacccaagctaagccacatttcgaagagcacctaaacgaatgatcatgcagctatcacaaacctcgcgaccttcaatc 153  Q
    ||||||||| || ||||||||||||||||||||||||  ||| ||||||| || |||||||||||||| ||||| |||||    
T  22773681 aacacccaaactgagccacatttcgaagagcacctaacagaaggatcatgtagatatcacaaacctcgtgacctccaatc 22773602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 87 - 184
Target Start/End: Complemental strand, 36631006 - 36630909
Alignment:
Q  87 agccacatttcgaagagcacctaaacgaatgatcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacac-aaagcccaaaaa 184  Q
    |||||||||||||||||||||| | |||| ||||||||||||  ||| ||||||||||||| | ||| | |||||||| |||| || ||||||||||||    
T  36631006 agccacatttcgaagagcacctgaccgaaggatcatgcagctcccac-aacctcgcgacctccgatccatcgaaagagcacaaaacaaaagcccaaaaa 36630909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 24449774 - 24449948
Alignment:
Q  20 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatga 118  Q
    ||||||||||||||||||||  || |||||||| || | |||||||| | | || |||||||||||| |||| ||||||||||||||||||| |||| ||    
T  24449774 ccatcgtcactactcacccacaaataacaccctcaaaataaaactcctagaccccaacacccaagctgagccgcatttcgaagagcacctaaccgaagga 24449873  T
Q  119 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaaaccaacttaa 194  Q
    ||||||| ||||||||||||||||||||| | ||| ||| |||||| |||||||||| ||| ||||||||||||||    
T  24449874 tcatgcaactatcacaaacctcgcgacctccgatccaccaaaagagcacaacacaaatccc-aaaaaccaacttaa 24449948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 46692663 - 46692828
Alignment:
Q  20 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatga 118  Q
    ||||||||||||||||||||  |||||||||||  | | |||||| | | | || |||||||||||| |||||||||||||||||||| ||| || | ||    
T  46692663 ccatcgtcactactcacccacaaagaacaccctccaaataaaacttccagaccccaacacccaagctgagccacatttcgaagagcacttaaccggagga 46692762  T
Q  119 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 184  Q
    | ||||||||||||||||||||||||||| | | | |||||||||| |||||||||||||||||||    
T  46692763 taatgcagctatcacaaacctcgcgacctccgaaccaccgaaagagcacaacacaaagcccaaaaa 46692828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 5459398 - 5459233
Alignment:
Q  20 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatga 118  Q
    ||||||||||||||||||||  ||||||||| | || | |||||| | | | || |||||||||||| ||||||||||| ||||||||||||  ||| ||    
T  5459398 ccatcgtcactactcacccacaaagaacaccatcaaaataaaacttccagaccccaacacccaagctgagccacatttcaaagagcacctaactgaagga 5459299  T
Q  119 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 184  Q
    |||||||||||||||||||||||| |||| | | | || ||||||| |||||||||||||||||||    
T  5459298 tcatgcagctatcacaaacctcgcaacctccgaaccactgaaagagcacaacacaaagcccaaaaa 5459233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 184
Target Start/End: Original strand, 31585608 - 31585769
Alignment:
Q  25 gtcactactcacccatgaagaacaccctaaaga-aaaactc-caaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatgatcat 122  Q
    |||||||||||||||  ||||||||||| || | ||||||| || |  || |||||||||||| |||||||||||||||||||||||| | || ||||||    
T  31585608 gtcactactcacccacaaagaacaccctcaaaataaaactctcagacccccaacacccaagcttagccacatttcgaagagcacctaaccaaaggatcat 31585707  T
Q  123 gcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 184  Q
     |||||||||||||||||||||||| | | | ||||||| || |||||||||||||||||||    
T  31585708 acagctatcacaaacctcgcgacctccgacccaccgaaatagcacaacacaaagcccaaaaa 31585769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 22 - 183
Target Start/End: Complemental strand, 41920692 - 41920525
Alignment:
Q  22 atcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatg--- 117  Q
    ||||||||||||||||||  || |||||||| || | |||||||||| | || |||||||||||| ||||||||   |||||||||||||  ||| |       
T  41920692 atcgtcactactcacccacaaaaaacaccctcaaaataaaactccaagaccccaacacccaagctgagccacatgatgaagagcacctaactgaaggtta 41920593  T
Q  118 --atcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaa 183  Q
      |||||||||||||||||||||||||||||| | ||| |||||||||| ||||||||||||||||||    
T  41920592 ggatcatgcagctatcacaaacctcgcgacctccgatccaccgaaagagcacaacacaaagcccaaaa 41920525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 69 - 183
Target Start/End: Original strand, 30685798 - 30685912
Alignment:
Q  69 atcctaacacccaagctaagccacatttcgaagagcacctaaacgaatgatcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtaca 168  Q
    |||| |||||||||||| |||||||| || | |||||||||| | || ||||||||||||||||||||||||||||||| | | | |||||||||| |||    
T  30685798 atcccaacacccaagctgagccacatatcaaggagcacctaaccaaaggatcatgcagctatcacaaacctcgcgacctccgaaccaccgaaagagcaca 30685897  T
Q  169 acacaaagcccaaaa 183  Q
    |||||||||||||||    
T  30685898 acacaaagcccaaaa 30685912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 5389266 - 5389430
Alignment:
Q  20 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatga 118  Q
    |||||||||||||||||  |  ||||||||||| || | |||||||| | | || |||||||||||| |||||||| ||||||||||| ||| |||| ||    
T  5389266 ccatcgtcactactcacttac-aagaacaccctcaaaataaaactcccagaccccaacacccaagctgagccacatatcgaagagcacttaaccgaagga 5389364  T
Q  119 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 184  Q
     |||| ||||| ||||||||||||||||| | | | |||||||||| |||||||||||||||||||    
T  5389365 ccatgtagctaacacaaacctcgcgacctccgaaccaccgaaagagcacaacacaaagcccaaaaa 5389430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 6764224 - 6764355
Alignment:
Q  19 tccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatg 117  Q
    |||||||||||||||||||||  ||||||| ||| || | |||||||| | | || |  | ||||| | |||||||||||||||||||||||| |||| |    
T  6764224 tccatcgtcactactcacccacaaagaacatcctgaaaataaaactcccagaccccagtatccaagttgagccacatttcgaagagcacctaaccgaagg 6764323  T
Q  118 atcatgcagctatcacaaacctcgcgaccttc 149  Q
    | ||||||||||||||||||||| || |||||    
T  6764324 accatgcagctatcacaaacctcacgcccttc 6764355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 191
Target Start/End: Original strand, 24684390 - 24684493
Alignment:
Q  87 agccacatttcgaagagcacctaaacgaatgatcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaaac 186  Q
    |||||||||||||||||||||| | |||| ||||||||| ||  ||| ||||||||||||| | ||| |||||||||| |||| |||||  || ||||||    
T  24684390 agccacatttcgaagagcacctgaccgaaggatcatgcatcttccac-aacctcgcgacctccgatccaccgaaagagcacaaaacaaaagcccaaaaac 24684488  T
Q  187 caact 191  Q
    |||||    
T  24684489 caact 24684493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 8255264 - 8255099
Alignment:
Q  20 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatga 118  Q
    ||||||||||||||||||||  ||||||||||| || | |||||||  | | ||||||||||||||| ||||||||| ||||||||||||||  ||  ||    
T  8255264 ccatcgtcactactcacccacaaagaacaccctcaaaataaaactcacagaccctaacacccaagctgagccacattacgaagagcacctaactgatgga 8255165  T
Q  119 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 184  Q
    ||| ||||||||||||||||||||||||| | ||| |||||||||| |||| ||||||||||||||    
T  8255164 tcaagcagctatcacaaacctcgcgacctccgatccaccgaaagagcacaaaacaaagcccaaaaa 8255099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 8268682 - 8268517
Alignment:
Q  20 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatga 118  Q
    ||||||||||||||||||||  ||||||||||| || | |||||||  | | ||||||||||||||| ||||||||| ||||||||||||||  ||  ||    
T  8268682 ccatcgtcactactcacccacaaagaacaccctcaaaataaaactcacagaccctaacacccaagctgagccacattacgaagagcacctaactgatgga 8268583  T
Q  119 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 184  Q
    ||| ||||||||||||||||||||||||| | ||| |||||||||| |||| ||||||||||||||    
T  8268582 tcaagcagctatcacaaacctcgcgacctccgatccaccgaaagagcacaaaacaaagcccaaaaa 8268517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 88 - 184
Target Start/End: Complemental strand, 30964609 - 30964513
Alignment:
Q  88 gccacatttcgaagagcacctaaacgaatgatcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 184  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | | | ||| |||||| |||||||||| ||||||||    
T  30964609 gccacatttcgaagagcacctaaccgaatgatcatgcagctatcacaaacctcgcgacctccgaaccaccaaaagagcacaacacaaaacccaaaaa 30964513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 24 - 184
Target Start/End: Original strand, 30167412 - 30167573
Alignment:
Q  24 cgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatgatcat 122  Q
    |||||| |||||||||  ||||||||||| || | |||||||| | | || |||||||||| |  ||||||||||||||||| | ||| |||| | ||||    
T  30167412 cgtcaccactcacccacaaagaacaccctcaaaataaaactcccataccccaacacccaagttgggccacatttcgaagagcgcttaaccgaagggtcat 30167511  T
Q  123 gcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 184  Q
    |||||||||| |||||||||||||| |   | |||||||||| |||||||||| ||||||||    
T  30167512 gcagctatcataaacctcgcgacctccggaccaccgaaagagcacaacacaaaccccaaaaa 30167573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 4305951 - 4305797
Alignment:
Q  30 tactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatgatcatgcagct 128  Q
    ||||||||||  |||| |||||| || | |||||||| ||| || || ||||||| | ||||||||| |||||||||||| | |||| |||||||||| |    
T  4305951 tactcacccacaaagatcaccctgaaaataaaactcccaaacccaaatacccaagttgagccacatt-cgaagagcacctcaccgaaggatcatgcagtt 4305853  T
Q  129 atcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 184  Q
    ||||||||||| |||||||     | ||| |||||| ||||||||||||| |||||    
T  4305852 atcacaaaccttgcgacctctggaccaccaaaagagcacaacacaaagcctaaaaa 4305797  T

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Target: scaffold0343 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 5943 - 5777
Alignment:
Q  20 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatga 118  Q
    ||||| ||||||||||||||  || |||||||| || | |||||||| | |||| |||||||||||| ||||||||| |||||||||||||| |||| ||    
T  5943 ccatcatcactactcacccacaaaaaacaccctcaaaataaaactcccagatcccaacacccaagctgagccacattacgaagagcacctaaccgaagga 5844  T
Q  119 tcatgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtac-aacacaaagcccaaaaa 184  Q
    ||| | ||||||||||||||| ||||||| | |||||||||||||| || || ||||||||||||||    
T  5843 tcaagtagctatcacaaaccttgcgacctccgatctaccgaaagagcacaaaaacaaagcccaaaaa 5777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 42 - 194
Target Start/End: Original strand, 35640 - 35790
Alignment:
Q  42 aagaacaccctaaagaaaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatgatcatgcagctatcacaaacctcg 141  Q
    |||||||| ||||| ||||||||| | | || |||||||||||| |||| ||||||||||||||||||| |||  |||||||||||||||||||| ||||    
T  35640 aagaacactctaaa-aaaaactcccacaccccaacacccaagctgagcctcatttcgaagagcacctaaccgatggatcatgcagctatcacaaatctcg 35738  T
Q  142 cgaccttcaatctaccgaaagagtacaacacaaagcccaaaaaaccaacttaa 194  Q
     ||||| | ||| |||||||||| |||||| ||||||| ||||||||||||||    
T  35739 tgacctccgatccaccgaaagagcacaacataaagccc-aaaaaccaacttaa 35790  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 3117729 - 3117565
Alignment:
Q  21 catcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatgat 119  Q
    ||||||| ||||| |||||  |||||||||||| | | |||||||| | | || |||||||||| | |||||||||||||||||||| ||| |||| |||    
T  3117729 catcgtctctacttacccacaaagaacaccctataaataaaactcccagaccccaacacccaagttgagccacatttcgaagagcacataatcgaaggat 3117630  T
Q  120 catgcagctatcacaaacctcgcgaccttcaatctaccgaaagagtacaacacaaagcccaaaaa 184  Q
    |||||| ||||||||||||||||||||| | | | ||  |||||| |||||||||||||||||||    
T  3117629 catgcaactatcacaaacctcgcgacctccgaaccacataaagagcacaacacaaagcccaaaaa 3117565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 10542069 - 10541967
Alignment:
Q  20 ccatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaacacccaagctaagccacatttcgaagagcacctaaacgaatga 118  Q
    ||||||||||||||||||||  ||||| |||||  | | |||||| | | | || |||||||||||| |||||||||||||||||||||||| |||| ||    
T  10542069 ccatcgtcactactcacccacaaagaataccctccaaataaaacttccagaccccaacacccaagctgagccacatttcgaagagcacctaaccgaagga 10541970  T
Q  119 tca 121  Q
    |||    
T  10541969 tca 10541967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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