View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5742_low_29 (Length: 307)
Name: NF5742_low_29
Description: NF5742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5742_low_29 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 15 - 297
Target Start/End: Original strand, 17734718 - 17735002
Alignment:
| Q |
15 |
catcaactgtacggaaacaagtacaacttctcgcaaccgttctttgttatgtgggacaaaatcttgggtacctacatgccatactcgttagagaagagag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
17734718 |
catcaactgtacggaaacaagtacaacttctcgcaaccgttctttgttatgtgggacaaaatcttgggtacccacatgccatactcgttagagaagagag |
17734817 |
T |
|
| Q |
115 |
ctaatggtggttttgaatctagaccttgtaaagcttacaaggatgaatgagtaattaatatgagtaattaatctttttgcttgatgagtatttttaatgt |
214 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17734818 |
ctagtggtggttttgaatctagaccttgtaaagcttacaaggatgaatgagtaattaatatgagtaattaatctttttgcttgatgagtatttttaatgt |
17734917 |
T |
|
| Q |
215 |
gtaccagtattg-nnnnnnnnncttcccacgttatgatgacgagcaccgagagtgatcatg-ctgtatatacattacatatgatg |
297 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
17734918 |
gtaccagtattgttttttttttcttcccacgttatgatgacgagcaccgagagtgatcatgcctgtatatacattacatatgatg |
17735002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University