View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5742_low_31 (Length: 271)

Name: NF5742_low_31
Description: NF5742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5742_low_31
NF5742_low_31
[»] chr3 (3 HSPs)
chr3 (9-266)||(11897148-11897405)
chr3 (9-267)||(26432588-26432846)
chr3 (110-194)||(23424570-23424654)
[»] chr8 (3 HSPs)
chr8 (9-266)||(23132475-23132732)
chr8 (110-259)||(26587231-26587380)
chr8 (14-172)||(14760016-14760174)
[»] chr1 (3 HSPs)
chr1 (9-266)||(20284849-20285106)
chr1 (101-268)||(50236550-50236717)
chr1 (113-194)||(50451967-50452048)
[»] chr2 (11 HSPs)
chr2 (9-266)||(14653570-14653827)
chr2 (113-259)||(26791325-26791471)
chr2 (56-189)||(35135159-35135292)
chr2 (56-189)||(40328252-40328385)
chr2 (101-210)||(16322502-16322611)
chr2 (113-189)||(573266-573342)
chr2 (116-189)||(3779048-3779121)
chr2 (113-164)||(35062956-35063007)
chr2 (108-194)||(42403209-42403295)
chr2 (113-258)||(177504-177649)
chr2 (128-189)||(19265490-19265551)
[»] scaffold0036 (1 HSPs)
scaffold0036 (98-203)||(75967-76072)
[»] chr4 (3 HSPs)
chr4 (116-267)||(54477407-54477558)
chr4 (113-194)||(3881787-3881868)
chr4 (110-213)||(46784469-46784572)
[»] chr5 (2 HSPs)
chr5 (113-219)||(32874457-32874563)
chr5 (113-267)||(7817131-7817285)
[»] chr6 (4 HSPs)
chr6 (110-210)||(24990660-24990760)
chr6 (110-267)||(24893833-24893990)
chr6 (97-210)||(13599639-13599752)
chr6 (113-220)||(27852952-27853059)
[»] chr7 (2 HSPs)
chr7 (97-210)||(16769946-16770059)
chr7 (97-210)||(27781614-27781727)


Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 9 - 266
Target Start/End: Complemental strand, 11897405 - 11897148
Alignment:
Q  9 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  11897405 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggacgactgctgagttgatagtagc 11897306  T
Q  109 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccgttc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11897305 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 11897206  T
Q  209 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatgatgatgt 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11897205 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgt 11897148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 9 - 267
Target Start/End: Original strand, 26432588 - 26432846
Alignment:
Q  9 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc 108  Q
    ||||||||| |||||| ||||| ||||||||||||||||||||||| |||||||| || ||| ||||||||||||||| ||| || ||||||||||||||    
T  26432588 ggacatcatttgcaaaaaggaggtgggataaatgcggccccgtaggagtgatttgaatcggttcccatcttccttgggtgacggcggagttgatagcagc 26432687  T
Q  109 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccgttc 208  Q
     || |||||||||||||||| |||||| |||||||||||||| ||||||||||||||||| ||||| ||||| ||||||| ||||||||||||||| |||    
T  26432688 ggatagcttttccatgcaaatgatgaagagataaggggacaatggatcaccttgtcggagaccatgagaaggtttgaaagacggcaacttgttcccattc 26432787  T
Q  209 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatgatgatgtc 267  Q
    ||||||||||||||  | |  ||||  || |||||||||||||| |||||| |||||||    
T  26432788 caaagtatagagtagtttgatgaagagacacaatgcatgatgagtttgatggtgatgtc 26432846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 23424654 - 23424570
Alignment:
Q  110 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggca 194  Q
    ||||||||||||||||| || |||||||||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||    
T  23424654 gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggca 23424570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 9 - 266
Target Start/End: Original strand, 23132475 - 23132732
Alignment:
Q  9 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc 108  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23132475 ggacatcatctgcaaataggagatgggataaatggggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc 23132574  T
Q  109 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccgttc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23132575 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacgtatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 23132674  T
Q  209 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatgatgatgt 266  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  23132675 caaagtatagagtaactaggagaagctacgcaatgcatgatgaacttgatggtgatgt 23132732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 259
Target Start/End: Complemental strand, 26587380 - 26587231
Alignment:
Q  110 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccgttcc 209  Q
    ||||| || ||||| ||||| ||||| || || || ||||| || |||||||||||||||||||| | ||||||||| || ||||| ||||| || || |    
T  26587380 gaaagtttctccatacaaagaatgaagaggtagggagacaatgggtcaccttgtcggaggccatgagtaggcttgaaggggggcaatttgttaccatttc 26587281  T
Q  210 aaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatg 259  Q
    |||| || | | |  |||  ||||  ||||||||||||||||| ||||||    
T  26587280 aaaggatggtgaaggtagatgaagtgacgcaatgcatgatgagtttgatg 26587231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 172
Target Start/End: Complemental strand, 14760174 - 14760016
Alignment:
Q  14 tcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaa 113  Q
    |||||||||||||| || || ||||  || |||||||||   |||||||| |  ||| |||| ||||||||   ||| ||||| || ||||||   || |    
T  14760174 tcatctgcaaatagtaggtgagatatctggggccccgtatttgtgatttgaaccggttcccaacttccttgattgaccgctgaatttatagcaatagaga 14760075  T
Q  114 gcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggcca 172  Q
    |||||||||| ||||| ||||| || || |||||||||||||| ||||| || ||||||    
T  14760074 gcttttccatacaaagaatgaagaggtatggggacaacggatctccttggcgaaggcca 14760016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 266
Target Start/End: Complemental strand, 20285106 - 20284849
Alignment:
Q  9 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20285106 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc 20285007  T
Q  109 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccgttc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||   |||||||||    
T  20285006 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcgcaggccatgagaaggctcgaaaggcggcaaccctttcccgttc 20284907  T
Q  209 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatgatgatgt 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20284906 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgt 20284849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 268
Target Start/End: Original strand, 50236550 - 50236717
Alignment:
Q  101 atagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgt 200  Q
    |||||| |||| || || ||||| || | ||||||||| |||||||| | ||||||||||| || ||||||||| | |||||||||||| |||| |||||    
T  50236550 atagcaactgatagtttctccatacacaagatgaaaaggtaaggggaaagcggatcaccttatctgaggccatgagtaggcttgaaagggggcatcttgt 50236649  T
Q  201 tcccgttccaaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatgatgatgtcc 268  Q
    |||||||||| |  ||||||||  | || || |  || |||||||||||||| ||| || ||||||||    
T  50236650 tcccgttccataagatagagtaggtgggtgaggagacacaatgcatgatgagtttggtggtgatgtcc 50236717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 50452048 - 50451967
Alignment:
Q  113 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggca 194  Q
    ||||| ||||| ||||| ||||| || ||||| || | |||||||||||||||||||||||| | ||| |||||| ||||||    
T  50452048 agcttctccatacaaagaatgaagaggtaaggagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggca 50451967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 266
Target Start/End: Original strand, 14653570 - 14653827
Alignment:
Q  9 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  14653570 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggagtgatttggatgggtgcccatcttccttgggcaactgctgagtttatagcagc 14653669  T
Q  109 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccgttc 208  Q
     || ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||    
T  14653670 ggatagcttttccatgcaaaggatgaaaaaataaggggacaacggatcaccttgttggaggccatgagaaggcttgaaaggcggcaacttgttcccattc 14653769  T
Q  209 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatgatgatgt 266  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  14653770 caaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgt 14653827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 259
Target Start/End: Complemental strand, 26791471 - 26791325
Alignment:
Q  113 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccgttccaaa 212  Q
    ||||| ||||||||||| || ||||| || ||||| | ||||||||| || | ||||||||| | ||||| |||||| |||||| | || || |||||||    
T  26791471 agcttctccatgcaaagaataaaaaggtacggggaaagcggatcaccctgcctgaggccatgagtaggctcgaaaggaggcaacctatttccattccaaa 26791372  T
Q  213 gtatagagtaactaggagaagctacgcaatgcatgatgagcttgatg 259  Q
    | |||||| | || |  ||||  ||||||||||||||||||||||||    
T  26791371 gaatagagaagctggatgaagtaacgcaatgcatgatgagcttgatg 26791325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 189
Target Start/End: Original strand, 35135159 - 35135292
Alignment:
Q  56 gtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggat 155  Q
    |||||||| || ||| ||||||| ||||||  ||| || || ||||| ||| | || || |||||||| || ||||||||||||||||| |||||||| |    
T  35135159 gtgatttgtatcggttcccatctcccttggttgacagcggaattgattgcaacagagagtttttccatacataggatgaaaagataaggagacaacgggt 35135258  T
Q  156 caccttgtcggaggccatgcgaaggcttgaaagg 189  Q
    ||||||| || || ||||| | ||||||||||||    
T  35135259 caccttgacgaagtccatgagtaggcttgaaagg 35135292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 189
Target Start/End: Complemental strand, 40328385 - 40328252
Alignment:
Q  56 gtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggat 155  Q
    |||||||| || ||| ||||||| ||||||  ||| || || ||||| ||| | || || |||||||| || ||||||||||||||||| |||||||| |    
T  40328385 gtgatttgtatcggttcccatctcccttggttgacagcggaattgattgcaacagagagtttttccatacataggatgaaaagataaggagacaacgggt 40328286  T
Q  156 caccttgtcggaggccatgcgaaggcttgaaagg 189  Q
    ||||||| || || ||||| | ||||||||||||    
T  40328285 caccttgacgaagtccatgagtaggcttgaaagg 40328252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 210
Target Start/End: Complemental strand, 16322611 - 16322502
Alignment:
Q  101 atagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgt 200  Q
    |||||| | ||||| |||||||||||||| |||||||| || || || | ||| ||||||||||| |||||||| |  ||||||||||| |||| |||||    
T  16322611 atagcaacagaaagtttttccatgcaaagtatgaaaaggtacggagaaagcgggtcaccttgtcgaaggccatgagtgggcttgaaaggaggcatcttgt 16322512  T
Q  201 tcccgttcca 210  Q
    | || |||||    
T  16322511 ttccattcca 16322502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 573342 - 573266
Alignment:
Q  113 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaagg 189  Q
    ||||| ||||||||||||||||| || ||||| || | |||||||||||||| ||||||||| ||||| || |||||    
T  573342 agcttctccatgcaaaggatgaataggtaaggagagagcggatcaccttgtctgaggccatgggaaggtttaaaagg 573266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 3779048 - 3779121
Alignment:
Q  116 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaagg 189  Q
    |||||||| || ||||||||||||||||| |||| ||| |||||||| || || ||||| | ||||||||||||    
T  3779048 ttttccatacagaggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaagg 3779121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 164
Target Start/End: Original strand, 35062956 - 35063007
Alignment:
Q  113 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtc 164  Q
    ||||||||||| ||||||||||||||||| ||||| |  |||||||||||||    
T  35062956 agcttttccatacaaaggatgaaaagatagggggatagtggatcaccttgtc 35063007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 194
Target Start/End: Original strand, 42403209 - 42403295
Alignment:
Q  108 ctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggca 194  Q
    ||||||||||||||||||| || || || |||||||| || |  || |||||||| ||||||||||| |  ||||||||||| ||||    
T  42403209 ctgaaagcttttccatgcacagtataaatagataaggtgagagagggtcaccttgccggaggccatgagtgggcttgaaaggaggca 42403295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 258
Target Start/End: Complemental strand, 177649 - 177504
Alignment:
Q  113 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccgttccaaa 212  Q
    |||||||||||||| | |||||| || ||||| ||||| || ||||||||||  || ||||| | |||||||| ||| ||| | ||||| || |||||||    
T  177649 agcttttccatgcagatgatgaataggtaaggagacaaagggtcaccttgtcttagaccatgagtaggcttgataggaggccatttgtttccattccaaa 177550  T
Q  213 gtatagagtaactaggagaagctacgcaatgcatgatgagcttgat 258  Q
    | | |||| |  | | |||||  || |||||||||||||| |||||    
T  177549 gaacagagaatgttgaagaagtgacacaatgcatgatgagtttgat 177504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 19265551 - 19265490
Alignment:
Q  128 aggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaagg 189  Q
    ||||||||||||||||| |||| ||| |||||||| || || ||||| | ||||||||||||    
T  19265551 aggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaagg 19265490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 76072 - 75967
Alignment:
Q  98 ttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaact 197  Q
    ||||||||| | || ||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| ||||| | ||||||||| |  |||| ||    
T  76072 ttgatagcaacagagagcttttccatgcaaaggatgaaaagataaggggacaactggtcaccttgtctgagaccatgagtaggcttgaaggaaggcagct 75973  T
Q  198 tgttcc 203  Q
    ||||||    
T  75972 tgttcc 75967  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 267
Target Start/End: Original strand, 54477407 - 54477558
Alignment:
Q  116 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccgttccaaagta 215  Q
    |||||||||||||| ||||| |||||||||||||| ||||||||||| || || ||||| | |||||||||||  || | |||||| || |||||||| |    
T  54477407 ttttccatgcaaagaatgaagagataaggggacaaaggatcaccttggcgcagaccatgtgtaggcttgaaagatggaagcttgtttccattccaaagga 54477506  T
Q  216 tagagtaactaggagaagctacgcaatgcatgatgagcttgatgatgatgtc 267  Q
    || ||||  | |  || |  || ||||||||||||||||||||| |||||||    
T  54477507 taaagtattttgatgatgaaacacaatgcatgatgagcttgatggtgatgtc 54477558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 3881868 - 3881787
Alignment:
Q  113 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggca 194  Q
    ||||||||||| ||||| ||||| || ||| | || | |||||||||||||||||||||||| | ||| |||||| ||||||    
T  3881868 agcttttccatacaaagaatgaagaggtaaagagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggca 3881787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 213
Target Start/End: Original strand, 46784469 - 46784572
Alignment:
Q  110 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccgttcc 209  Q
    ||||| |||| ||||||||||||||| || || || || |  |||||||||||||  |||||||| | ||| |||||||||||||| || || || ||||    
T  46784469 gaaagttttttcatgcaaaggatgaagaggtagggagatagaggatcaccttgtctaaggccatgagtaggtttgaaaggcggcaatttatttccattcc 46784568  T
Q  210 aaag 213  Q
    ||||    
T  46784569 aaag 46784572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 113 - 219
Target Start/End: Original strand, 32874457 - 32874563
Alignment:
Q  113 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccgttccaaa 212  Q
    |||||||||||||||| |||||| | ||| || || | ||| || ||||| ||||||||||| |||||||||||||| |||||||||||||| || ||||    
T  32874457 agcttttccatgcaaatgatgaataaatagggagagagcgggtctccttggcggaggccatgagaaggcttgaaaggaggcaacttgttcccatttcaaa 32874556  T
Q  213 gtataga 219  Q
    | |||||    
T  32874557 ggataga 32874563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 267
Target Start/End: Complemental strand, 7817285 - 7817131
Alignment:
Q  113 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccgttccaaa 212  Q
    ||||||||||||||||| |||||||| ||||| || || || ||||| |||| ||| ||||| | |||||||||||  || |  |||||||| ||||| |    
T  7817285 agcttttccatgcaaagaatgaaaaggtaaggagataaagggtcaccctgtctgagaccatgagtaggcttgaaagaaggaagtttgttcccattccata 7817186  T
Q  213 gtatagagtaactaggagaagctacgcaatgcatgatgagcttgatgatgatgtc 267  Q
      ||||||||  | |  || | ||| ||||||||||||||||||||  |||||||    
T  7817185 aaatagagtagttggaggatgatacacaatgcatgatgagcttgattgtgatgtc 7817131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 210
Target Start/End: Original strand, 24990660 - 24990760
Alignment:
Q  110 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccgttcc 209  Q
    |||||||| ||||||||||| |||||||||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||  ||||| |||||||    
T  24990660 gaaagcttctccatgcaaagaatgaaaagataaggagagagcgggtcaccttgtctgagaccatgggtgggcttgaaagggggcattttgttaccgttcc 24990759  T
Q  210 a 210  Q
    |    
T  24990760 a 24990760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 267
Target Start/End: Original strand, 24893833 - 24893990
Alignment:
Q  110 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccgttcc 209  Q
    ||||||||||||||||| || |||||||||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||  ||||| || ||||    
T  24893833 gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggcattttgttaccattcc 24893932  T
Q  210 aaagtatagagtaactaggagaagct-acgcaatgcatgatgagcttgatgatgatgtc 267  Q
    | | ||| ||| ||   |||| || | || ||||||||||||||||||||| |||||||    
T  24893933 ataatatggag-aatgtggaggaggtgacacaatgcatgatgagcttgatggtgatgtc 24893990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 210
Target Start/End: Complemental strand, 13599752 - 13599639
Alignment:
Q  97 gttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaac 196  Q
    |||||| ||||||||||| |||||||| || | |||||| |||||||| || |  ||||||||||| |||||  |||| | |||||||||  |||| |||    
T  13599752 gttgatggcagctgaaagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgacggagatcatgagtaggcttgaattgcggaaac 13599653  T
Q  197 ttgttcccgttcca 210  Q
    ||||| || |||||    
T  13599652 ttgttaccattcca 13599639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 220
Target Start/End: Original strand, 27852952 - 27853059
Alignment:
Q  113 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccgttccaaa 212  Q
    ||||||||||| ||||||||||| |  ||||| || || || || |||||||  || ||||| |||||||||||||  ||||  ||||| ||||||||||    
T  27852952 agcttttccatacaaaggatgaataagtaaggagataaagggtccccttgtcttagaccatgagaaggcttgaaagaaggcattttgtttccgttccaaa 27853051  T
Q  213 gtatagag 220  Q
    | ||||||    
T  27853052 gaatagag 27853059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 210
Target Start/End: Original strand, 16769946 - 16770059
Alignment:
Q  97 gttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaac 196  Q
    |||||| || ||||| || |||||||| || | |||||| |||||||| || |  |||||||||||||| || ||||| | ||| |||||| |||||||     
T  16769946 gttgatggctgctgagagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgtcgaagaccatgagtaggtttgaaatgcggcaat 16770045  T
Q  197 ttgttcccgttcca 210  Q
    ||||| || |||||    
T  16770046 ttgttaccattcca 16770059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 210
Target Start/End: Original strand, 27781614 - 27781727
Alignment:
Q  97 gttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaac 196  Q
    |||||||||| |  ||||||| |||||||| |||||||| || ||||| || |  || |||||||||| ||||||||| |  ||||| || || ||||      
T  27781614 gttgatagcaaccaaaagcttctccatgcagaggatgaagaggtaaggtgaaagagggtcaccttgtctgaggccatgagttggcttaaatggaggcatt 27781713  T
Q  197 ttgttcccgttcca 210  Q
    ||||||||||||||    
T  27781714 ttgttcccgttcca 27781727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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