View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5742_low_42 (Length: 234)
Name: NF5742_low_42
Description: NF5742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5742_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 48167689 - 48167482
Alignment:
| Q |
17 |
catcatccttgacaatccaaaatccgacagtttggcttcatatttctcagtcaaaagaatgtttgtaagctaaacaataaaatcaatacaaggcattaag |
116 |
Q |
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| T |
48167689 |
catcatccttgacaatccaaaatccgacagtttggcttcatatttctcagtcaaaagaatgtttgtaagctaaacaataaaatcaatacaaggcattaag |
48167590 |
T |
|
| Q |
117 |
aaaacattttctaatcattcccaattaagtgcagaatccattccagattaacttcatcacacttaccttgatatctctatggacaacacaaccctctata |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48167589 |
aaaacattttctaatcattcccaattaagtgcagaatccattccagattaacttcatcacacttaccttgatatctctatggacaacacaaccctctata |
48167490 |
T |
|
| Q |
217 |
tgatgatg |
224 |
Q |
| |
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|||||||| |
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| T |
48167489 |
tgatgatg |
48167482 |
T |
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