View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5742_low_45 (Length: 231)
Name: NF5742_low_45
Description: NF5742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5742_low_45 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 3 - 231
Target Start/End: Original strand, 21080866 - 21081093
Alignment:
| Q |
3 |
atcacatagtactatgtcacaaccaaaaccaaaaataggacaaacatcattatttgctttagaaaatgcatcgacaacacaatgatttcctgcttcaaaa |
102 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21080866 |
atcacaaagtactatgtcacaaccaaaaccaaaaataggacaaacatcattattttctttagaaaatgcatcgacaacacaatgatttcctgcttcaaaa |
21080965 |
T |
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| Q |
103 |
ttttcttcggcaatacaatggttccccttcttatcgtgcacactaaaagccaccctttcacattctaacgatgttcttctgtcctccgacaagatactac |
202 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
21080966 |
ttttcttcggcaatacaatggttcccgttcttatcgtgca-aataaaagctactctttcacattctaacgatgttcttctgtcctccaacaagatactac |
21081064 |
T |
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| Q |
203 |
tggatggtctatattttttaataaccaca |
231 |
Q |
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|||||||||||||||||||| |||||||| |
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| T |
21081065 |
tggatggtctatattttttactaaccaca |
21081093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 3 - 220
Target Start/End: Original strand, 21061473 - 21061690
Alignment:
| Q |
3 |
atcacatagtactatgtcacaaccaaaaccaaaaataggacaaacatcattatttgctttagaaaatgcatcgacaacacaatgatttcctgcttcaaaa |
102 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21061473 |
atcacaaagtactatgtcacaaccaaaaccaaaaataggacaaacatcattattttctttaaaaaatgcatcgacaacacaatgatttcctgcttcaaaa |
21061572 |
T |
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| Q |
103 |
ttttcttcggcaatacaatggttccccttcttatcgtgcacactaaaagccaccctttcacattctaacgatgttcttctgtcctccgacaagatactac |
202 |
Q |
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| T |
21061573 |
tttgcttcggcaatacaatggttccccttcttatcgtgcaaactaaaagctaccctttcacattctaacgatgtccttctgtcctccaacaagatactac |
21061672 |
T |
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| Q |
203 |
tggatggtctatattttt |
220 |
Q |
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|||||||||||||||||| |
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| T |
21061673 |
tggatggtctatattttt |
21061690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 21062018 - 21061890
Alignment:
| Q |
3 |
atcacatagtactatgtcacaaccaaaaccaaaaataggacaaacatcattatttgctttagaaaatgcatcgacaacacaatgatttcctgcttcaaaa |
102 |
Q |
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|||||||| || | |||||| ||||||||| |||||| ||||| || ||||||| | |||||| ||| |||||||||||||||| ||| ||| | || |
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| T |
21062018 |
atcacataatattgtgtcacccccaaaaccacaaatagaacaaatataattattttcattagaatttgctacgacaacacaatgattcccttcttaagaa |
21061919 |
T |
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| Q |
103 |
ttttcttcggcaatacaatggttcccctt |
131 |
Q |
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|||||||| |||| ||||||||||||||| |
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| T |
21061918 |
ttttcttcagcaacacaatggttcccctt |
21061890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 21081411 - 21081283
Alignment:
| Q |
3 |
atcacatagtactatgtcacaaccaaaaccaaaaataggacaaacatcattatttgctttagaaaatgcatcgacaacacaatgatttcctgcttcaaaa |
102 |
Q |
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|||||||| || | |||||| ||||||||| |||||| ||||| || ||||||| | |||||| ||| |||||||||||||||| ||| ||| | || |
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| T |
21081411 |
atcacataatattgtgtcacccccaaaaccacaaatagaacaaatataattattttcattagaatttgctacgacaacacaatgattcccttcttaagaa |
21081312 |
T |
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| Q |
103 |
ttttcttcggcaatacaatggttcccctt |
131 |
Q |
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||||||||| ||| |||||| |||||||| |
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| T |
21081311 |
ttttcttcgacaacacaatgattcccctt |
21081283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 47528685 - 47528624
Alignment:
| Q |
3 |
atcacatagtactatgtcacaaccaaaaccaaaaataggacaaac---atcattatttgctt |
61 |
Q |
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|||||||||||||||||||| ||||||||| |||||| |||||| |||||||||||||| |
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| T |
47528685 |
atcacatagtactatgtcacgtccaaaaccacaaatagaacaaacagtatcattatttgctt |
47528624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 47523134 - 47523084
Alignment:
| Q |
77 |
caacacaatgatttcctgcttcaaaattttcttcggcaatacaatggttcc |
127 |
Q |
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||||||||||||| ||||||||| ||||| |||| ||||||||||| |||| |
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| T |
47523134 |
caacacaatgattccctgcttcagaatttgcttcagcaatacaatgattcc |
47523084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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