View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5742_low_47 (Length: 222)
Name: NF5742_low_47
Description: NF5742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5742_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 17701570 - 17701376
Alignment:
| Q |
15 |
atcatgatgagttctttttcttcaccctatttccattttcatcattctattgatcacaaacccaaaaacaactatgaata---tcatgatactgaaattc |
111 |
Q |
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| T |
17701570 |
atcatgaagagttctttttcttcaccctatttccattttcatcattcaatcgatcacaaacccaaaaacaactatgaatatcatcatggtaatgaaattg |
17701471 |
T |
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| Q |
112 |
agaaacaacaaggttcaaaccctaagttcaaaccctatagnnnnnnngtacactctcctgagccaaacactcacaacatcatgaacaaaccctat |
206 |
Q |
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| T |
17701470 |
agaaacaccaagattcaaaccctaagttcaaaccctatagtttttctgtacactctcctgagcaaatcactcacaacatcatgaacaaacactat |
17701376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 10 - 206
Target Start/End: Original strand, 17662519 - 17662703
Alignment:
| Q |
10 |
acatcatcatgatgagttctttttcttcaccctatttccattttcatcattctattgatcacaaacccaaaaacaactatgaat---atcatgatactga |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
17662519 |
acatcatcatgatgagttctttttcttcaccctatttccattttcatcattctattgatcacaaacccaaaaacaactatgaatatcatcatggtactga |
17662618 |
T |
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| Q |
107 |
aattcagaaacaacaaggttcaaacccta-agttcaaaccctatagnnnnnnngtacactctcctgagccaaacactcacaacatcatgaacaaacccta |
205 |
Q |
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| T |
17662619 |
aattcaga---aacaaggttcaaaccctatagtt-------------ttttttgtacactctcctgagccaaacactcacaacatcatgaacaaacccta |
17662702 |
T |
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