View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5742_low_49 (Length: 216)
Name: NF5742_low_49
Description: NF5742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5742_low_49 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 206
Target Start/End: Original strand, 13655640 - 13655836
Alignment:
| Q |
10 |
catcatcattacttccaagatcctcttctgcatctgaatgagcttctacttcatcatgttcttttctgtttgcttcaatttcaaaccctagacatttgaa |
109 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13655640 |
catcatcattactttcaagatcctcttctgcatctgaatgagcttctacttcatcatgttcttttttgtttgcttcaatttcaaaccctagacatttgaa |
13655739 |
T |
|
| Q |
110 |
gaaagttccaaggaatttttggagtaatgaacatggatggtaaagataaaaagtggcactcctctcatttgtaacctcttcttcttgatttgatgat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13655740 |
gaaagttccaaggaatttttggagtaatgaacatggatggtaaagataaaaagtggcactcctctcatttgtaacctcttcttcttgatttggtgat |
13655836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 13661132 - 13661239
Alignment:
| Q |
101 |
acatttgaagaaagttccaaggaatttttggagtaatgaacatggatggtaaagataaaaagtggcactcctctcatttgtaacctcttcttcttgattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
13661132 |
acatttgaagaaagttccaaggaatttttggagtaaagaacatggatggtgaagataaaaagtggcactcctctcatttgaaacctctgcttcttgattt |
13661231 |
T |
|
| Q |
201 |
gatgatgt |
208 |
Q |
| |
|
| |||||| |
|
|
| T |
13661232 |
ggtgatgt |
13661239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University