View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5742_low_52 (Length: 206)
Name: NF5742_low_52
Description: NF5742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5742_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 45113691 - 45113864
Alignment:
| Q |
1 |
tcatagttgaaaagggtaggagcaactctttgagaaagatgtcggtggttgggctagttcggctgagaccgctgctgttagcagctgctagctgcgtgtg |
100 |
Q |
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| T |
45113691 |
tcatagttgaaaagggtaggagcaagtctttgagaaagatgtcagtggttgggctagttcggctgagactgctgctgttagtagctgctagctgcgtgtg |
45113790 |
T |
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| Q |
101 |
cagttgtttctgtttg---gtggcagctagggtgtggccgatttaggtattggtttggaacaattgctggtgca |
171 |
Q |
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| T |
45113791 |
cagctgtttctgtttggttgtggcagctagggtgtggccgatttaggtattggtttggaacaactgctggtgca |
45113864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 1015896 - 1016006
Alignment:
| Q |
8 |
tgaaaagggtaggagcaactctttgagaaagatgtcggtggttgggctagttcggctgagaccgctgctgttagcagctgctagctgcgtgtgcagttgt |
107 |
Q |
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| T |
1015896 |
tgaaaagggtaggagcaggtctttgagaaatatgtctgtggctgggctggttcggctgagactgttgctgttagcagctgctagctgcgtgtgcagctgt |
1015995 |
T |
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| Q |
108 |
ttctgtttggt |
118 |
Q |
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| T |
1015996 |
ttctgtttggt |
1016006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 38116276 - 38116323
Alignment:
| Q |
1 |
tcatagttgaaaagggtaggagcaactctttgagaaagatgtcggtgg |
48 |
Q |
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| T |
38116276 |
tcatagttgaaaagggtaggagcaggtctttgagaaagatgtcggtgg |
38116323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 38116370 - 38116423
Alignment:
| Q |
117 |
gtggcagctagggtgtggccgatttaggtattggtttggaacaattgctggtgc |
170 |
Q |
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| T |
38116370 |
gtggcagctatggtgtggccggtttaggtattggtttggagcaactgctggtgc |
38116423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 73 - 169
Target Start/End: Original strand, 22776196 - 22776299
Alignment:
| Q |
73 |
tgctgttagcagctg---ctagctgcgtgtgcagttgtttctgtttg---gtggcagcta-gggtgtggccgatttaggtattggtttggaacaattgct |
165 |
Q |
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| T |
22776196 |
tgctgttagcagctggtgcttgctgcgtgtgtagttgtttctgtttggttgtggcagctaggggcgttgccggtttacgttttggtttggaacagctgct |
22776295 |
T |
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| Q |
166 |
ggtg |
169 |
Q |
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|||| |
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| T |
22776296 |
ggtg |
22776299 |
T |
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