View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5742_low_54 (Length: 201)
Name: NF5742_low_54
Description: NF5742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5742_low_54 |
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| [»] scaffold0598 (2 HSPs) |
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| [»] scaffold0387 (1 HSPs) |
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Alignment Details
Target: scaffold0598 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: scaffold0598
Description:
Target: scaffold0598; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 4492 - 4381
Alignment:
| Q |
15 |
gcatagggttatgatgttcaacgggtctattgatgtttaatctgcacatattatttatgattgattttagaaaacaagtaaatgcagatattttggaagt |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4492 |
gcatagggttatgatgttcaacgggtctattgatgtttaatctgcacatatgatttatgattgattttagaaaacaagtaaatgcagatattttggaagt |
4393 |
T |
|
| Q |
115 |
gattatattttt |
126 |
Q |
| |
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|||||||||||| |
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| T |
4392 |
gattatattttt |
4381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0598; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 193
Target Start/End: Complemental strand, 4316 - 4283
Alignment:
| Q |
160 |
gtcgggaatgaaacaacatttttatttgatgatg |
193 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
4316 |
gtcgggaatgaaacaacatttttatttgatgatg |
4283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 34467863 - 34467755
Alignment:
| Q |
16 |
catagggttatgatgttcaacgggtctattgatgtttaatctgcacatattatttatgattgattttagaaaacaagtaaatgcagatattttggaagtg |
115 |
Q |
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||||||| |||| |||||||||||| |||| ||||||||||| |||| ||| |||||| ||||||||||||||||| ||||||| ||| | | ||| |
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| T |
34467863 |
catagggctatgttgttcaacgggttcattgggttttaatctgcatatatgattgatgattt-ttttagaaaacaagtaagtgcagatttttagaaggtg |
34467765 |
T |
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| Q |
116 |
attatatttt |
125 |
Q |
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|||||||||| |
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| T |
34467764 |
attatatttt |
34467755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 41439438 - 41439332
Alignment:
| Q |
16 |
catagggttatgatgttcaacgggtctattgatgtttaatctgcacatattatttatgattgattttagaaaacaagtaaatgcagatattttggaagtg |
115 |
Q |
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|||||||||||| |||||||||||| |||| | ||||||||||| |||| ||| | ||||||||||||| |||||| ||||||| ||| | | ||| |
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| T |
41439438 |
catagggttatgttgttcaacgggttcattggtttttaatctgcatatatgattga----tgattttagaaaataagtaagtgcagatttttagaaggtg |
41439343 |
T |
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| Q |
116 |
attatattttt |
126 |
Q |
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||||||||||| |
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| T |
41439342 |
attatattttt |
41439332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 20442312 - 20442206
Alignment:
| Q |
16 |
catagggttatgatgttcaacgggtctattgatgtttaatctgcacatattatttatgattgattttagaaaacaagtaaatgcagatattttggaagtg |
115 |
Q |
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|||||||||||| |||||| ||||| |||| | ||||||||||| |||| ||| |||||| |||||||| |||||| ||||||| ||| | | ||| |
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| T |
20442312 |
catagggttatgttgttcaccgggttcattggtttttaatctgcatatatgattgatgatt----ttagaaaataagtaagtgcagatttttagaaggtg |
20442217 |
T |
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| Q |
116 |
attatattttt |
126 |
Q |
| |
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||||||||||| |
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| T |
20442216 |
attatattttt |
20442206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0387 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0387
Description:
Target: scaffold0387; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 3669 - 3775
Alignment:
| Q |
16 |
catagggttatgatgttcaacgggtctattgatgtttaatctgcacatattatttatgattgattttagaaaacaagtaaatgcagatattttggaagtg |
115 |
Q |
| |
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|||||||| ||| |||||||| ||| |||| | |||||||||||||||| ||| ||||| ||||||||| |||||||||||||| ||| | | || |
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| T |
3669 |
catagggtgatgttgttcaacaggttcattggtttttaatctgcacatatgattgatgat----tttagaaaataagtaaatgcagatttttcgaaggtt |
3764 |
T |
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| Q |
116 |
attatattttt |
126 |
Q |
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||||||||||| |
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| T |
3765 |
attatattttt |
3775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 16288286 - 16288392
Alignment:
| Q |
16 |
catagggttatgatgttcaacgggtctattgatgtttaatctgcacatattatttatgattgattttagaaaacaagtaaatgcagatattttggaagtg |
115 |
Q |
| |
|
|||||||||||| |||||||||||| ||| | ||||||||||| |||| ||| ||||| ||||||||| |||||| ||||||| ||| | | ||| |
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| T |
16288286 |
catagggttatgttgttcaacgggttcatttgtttttaatctgcatatatgattgatgat----tttagaaaataagtaagtgcagatttttagaaggtg |
16288381 |
T |
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| Q |
116 |
attatattttt |
126 |
Q |
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||||||||||| |
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| T |
16288382 |
attatattttt |
16288392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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