View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5742_low_6 (Length: 446)
Name: NF5742_low_6
Description: NF5742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5742_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 22278322 - 22278761
Alignment:
| Q |
1 |
caaacaaacataatctgaataaacccagaaagtttacctatattcctctcccccaccccaaaaaagacaacataaaatagaattgatagcggaaatgata |
100 |
Q |
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| T |
22278322 |
caaacaaacataatctgaataaacctagaaaatttacctatattcctcacccccaccccaaaaaagacaacataaaatagaatcgatagaggaaatgata |
22278421 |
T |
|
| Q |
101 |
cctgaagaggctttgaagaagtaaatagcataaacatgaagagatgatggtacatacttcaacgcacaatttcatctttaatttctagccaaaagtcttt |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
22278422 |
cctgaagaggctttgaagaagtagatagcataaacatgaaaagatgatggtacatacttcaacgcacaatttcatcttttatttctagccaaaagtcttt |
22278521 |
T |
|
| Q |
201 |
gaaaaaactaaaatttataccatccagaccagaactcttaaaacagtcccagatctccactttaacttcctcgaaattgaatagtttaatcaagacacga |
300 |
Q |
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| T |
22278522 |
gaaaaaactaaaatttataccatccggaccagaactcttaaaacagtcccagatctccactttaacttcctcgaaattgaatagtttaatcaagacatga |
22278621 |
T |
|
| Q |
301 |
gacaaactacgaaaatgtaaatcatccaccacatgtctgatctcattcctagccttaaaatgttcaaagacaacactacgcacgtcagacgccccctcca |
400 |
Q |
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| T |
22278622 |
gacaaactacgaaaatgtaaatcatccaccacatgtctgatctcattcctagccttaaaatgttcaaagacaacactacgcacgtcagacgccccctcca |
22278721 |
T |
|
| Q |
401 |
cctgaacactgtcaactataacaaaagatggatgatgtcc |
440 |
Q |
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| T |
22278722 |
cctgaacactgtcaactataacaaaagatggattatgtcc |
22278761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 21089945 - 21089887
Alignment:
| Q |
86 |
atagcggaaatgatacctgaagaggctttgaagaagtaaatagcataaacatgaagaga |
144 |
Q |
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|
| T |
21089945 |
atagaggaaatgatacctgaagggaatttgaagaaggaaatagcataaataggaagaga |
21089887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 17829460 - 17829525
Alignment:
| Q |
73 |
taaaatagaattgatagcggaaatgatacctgaagaggctttgaagaagtaaatagcataaacatg |
138 |
Q |
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| T |
17829460 |
taaaaaagaatcgatagaggagatgatacctgagggagctttgaagaagaaaatagcataatcatg |
17829525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 380706 - 380758
Alignment:
| Q |
92 |
gaaatgatacctgaagaggctttgaagaagtaaatagcataaacatgaagaga |
144 |
Q |
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|||||||||||||| || |||||||||||| ||| |||||| ||||| ||||| |
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| T |
380706 |
gaaatgatacctgatgaagctttgaagaaggaaagagcatagacatgcagaga |
380758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 41352634 - 41352565
Alignment:
| Q |
52 |
cccaccccaaaaaagacaacataaaatagaattgatagcggaaatgatacctgaagaggctttgaagaag |
121 |
Q |
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||||||| |||| | || |||||||||||||| |||| |||||||||| |||| | ||||||||||||| |
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| T |
41352634 |
cccaccctaaaagaaacgacataaaatagaatcaatagaggaaatgatatctgacggggctttgaagaag |
41352565 |
T |
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