View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5742_low_8 (Length: 434)
Name: NF5742_low_8
Description: NF5742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5742_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 85 - 428
Target Start/End: Original strand, 27939478 - 27939821
Alignment:
| Q |
85 |
tcacatttttaattcatattatcaataacccagatcagatccacaatgacagcaatatataaacaaaagggtcataggagcataccagtttagaagaaga |
184 |
Q |
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| T |
27939478 |
tcacatttttaattcatattatcaataacccagatcagatccacaatgacagcaatatatagacaaaagggtcataagagcataccagtttagaagaaga |
27939577 |
T |
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| Q |
185 |
gaatgcgaaaataatgaaaattgagagaacaaggaggagaatgaggaatcgaggctgagcgagaaacgcgatctctctacgcattgcttcagcacagtat |
284 |
Q |
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| T |
27939578 |
gaatgcgaaaataatgaaaattgagagaacaaggaggagaatgaggaatcgaggctgagcgagaaacgcgatctctctacgcattgcttcagcacagtat |
27939677 |
T |
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| Q |
285 |
ttggtcagtttataccgaatcagagaaaaatcgaaactttgatattctccatggaaggtagcttagtgggtttttgtcaacattgaaaggggtaaaggaa |
384 |
Q |
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| T |
27939678 |
ttggtcagtttataccgaatcagagaaaaatcgaaactttgatattctccatagaaggtagcttagtgggtttttgtcaacattgaaaggggtaaaggaa |
27939777 |
T |
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| Q |
385 |
aacgtgggacactttctcagttgagattttttggtgatgatgtc |
428 |
Q |
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| T |
27939778 |
aacgtgggacactttctcagtggagattttttggtgatgatgtc |
27939821 |
T |
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