View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5742_low_9 (Length: 428)

Name: NF5742_low_9
Description: NF5742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5742_low_9
NF5742_low_9
[»] chr4 (16 HSPs)
chr4 (171-419)||(15349253-15349501)
chr4 (171-419)||(14687181-14687435)
chr4 (171-415)||(42711184-42711434)
chr4 (3-141)||(15349085-15349223)
chr4 (3-139)||(14687013-14687149)
chr4 (3-122)||(45240098-45240217)
chr4 (3-122)||(10629601-10629720)
chr4 (3-122)||(18290874-18290993)
chr4 (3-116)||(45235472-45235585)
chr4 (3-122)||(11497854-11497973)
chr4 (3-141)||(42711019-42711157)
chr4 (172-308)||(45240267-45240404)
chr4 (172-308)||(11498023-11498159)
chr4 (172-295)||(18290701-18290824)
chr4 (189-298)||(11918125-11918233)
chr4 (172-309)||(10629417-10629551)
[»] chr7 (28 HSPs)
chr7 (171-419)||(540168-540416)
chr7 (171-419)||(16327176-16327430)
chr7 (171-419)||(9581453-9581707)
chr7 (171-419)||(9729305-9729559)
chr7 (171-419)||(4311279-4311532)
chr7 (171-419)||(8783498-8783752)
chr7 (256-419)||(14223144-14223313)
chr7 (3-141)||(14222956-14223094)
chr7 (3-141)||(16327020-16327158)
chr7 (3-141)||(8783342-8783480)
chr7 (3-122)||(5395982-5396101)
chr7 (3-122)||(540000-540119)
chr7 (3-122)||(10439579-10439698)
chr7 (3-141)||(9581737-9581875)
chr7 (12-122)||(13741275-13741385)
chr7 (3-141)||(4311559-4311697)
chr7 (3-123)||(12565856-12565976)
chr7 (3-122)||(13355090-13355212)
chr7 (3-122)||(23513923-23514041)
chr7 (172-309)||(23513736-23513873)
chr7 (172-299)||(4462117-4462244)
chr7 (54-141)||(9729589-9729676)
chr7 (15-122)||(16403601-16403708)
chr7 (172-309)||(13741088-13741225)
chr7 (172-305)||(5395811-5395944)
chr7 (172-309)||(12565670-12565807)
chr7 (172-312)||(10439748-10439888)
chr7 (16-118)||(4461973-4462075)
[»] chr1 (6 HSPs)
chr1 (171-419)||(27045424-27045672)
chr1 (3-122)||(27045721-27045840)
chr1 (3-122)||(21785684-21785803)
chr1 (205-303)||(22626469-22626567)
chr1 (172-308)||(21785853-21785986)
chr1 (18-46)||(19876943-19876971)
[»] chr6 (16 HSPs)
chr6 (171-419)||(22062920-22063168)
chr6 (3-122)||(22062752-22062871)
chr6 (171-419)||(19586983-19587222)
chr6 (3-141)||(19586828-19586965)
chr6 (3-122)||(18852871-18852990)
chr6 (3-122)||(17818370-17818489)
chr6 (172-325)||(23519161-23519314)
chr6 (172-309)||(18188979-18189116)
chr6 (3-115)||(18188814-18188922)
chr6 (172-298)||(17818194-17818320)
chr6 (16-118)||(23519005-23519107)
chr6 (171-309)||(18852688-18852822)
chr6 (171-216)||(29685293-29685338)
chr6 (18-122)||(25966485-25966589)
chr6 (16-81)||(29685446-29685511)
chr6 (172-213)||(24390285-24390326)
[»] chr3 (23 HSPs)
chr3 (171-419)||(6813419-6813667)
chr3 (171-422)||(12777913-12778170)
chr3 (171-419)||(15024254-15024508)
chr3 (3-122)||(13096564-13096683)
chr3 (3-122)||(6813716-6813835)
chr3 (3-122)||(9362198-9362317)
chr3 (3-122)||(20559883-20560002)
chr3 (3-122)||(20562191-20562310)
chr3 (3-122)||(20564499-20564618)
chr3 (3-141)||(3246757-3246895)
chr3 (3-122)||(13090048-13090167)
chr3 (3-141)||(12777745-12777883)
chr3 (77-141)||(15024526-15024590)
chr3 (172-308)||(20562017-20562153)
chr3 (172-308)||(20564325-20564461)
chr3 (172-308)||(20559709-20559845)
chr3 (172-309)||(13090217-13090351)
chr3 (172-309)||(9362367-9362501)
chr3 (172-309)||(13096380-13096514)
chr3 (76-122)||(20154880-20154926)
chr3 (171-217)||(3246922-3246968)
chr3 (18-88)||(10145886-10145956)
chr3 (18-88)||(13137438-13137508)
[»] scaffold0090 (2 HSPs)
scaffold0090 (171-419)||(29312-29566)
scaffold0090 (3-141)||(29596-29734)
[»] chr8 (11 HSPs)
chr8 (171-419)||(20000852-20001103)
chr8 (3-141)||(20001133-20001271)
chr8 (3-122)||(17619595-17619714)
chr8 (3-122)||(20040310-20040429)
chr8 (3-121)||(21855017-21855135)
chr8 (172-308)||(20040479-20040615)
chr8 (172-312)||(21855186-21855323)
chr8 (172-308)||(17619412-17619545)
chr8 (18-72)||(22034799-22034853)
chr8 (17-122)||(22903351-22903456)
chr8 (18-46)||(21954996-21955024)
[»] scaffold0035 (2 HSPs)
scaffold0035 (171-419)||(51962-52216)
scaffold0035 (3-141)||(51788-51926)
[»] chr5 (15 HSPs)
chr5 (171-419)||(23712116-23712370)
chr5 (3-141)||(20446089-20446227)
chr5 (3-122)||(23601881-23602000)
chr5 (3-122)||(22828000-22828119)
chr5 (3-122)||(18487304-18487423)
chr5 (3-122)||(24939384-24939503)
chr5 (3-141)||(23711945-23712083)
chr5 (3-122)||(21282151-21282270)
chr5 (3-122)||(24218683-24218802)
chr5 (172-303)||(20446255-20446386)
chr5 (172-309)||(21282320-21282458)
chr5 (172-295)||(18487473-18487596)
chr5 (172-298)||(23602050-23602173)
chr5 (172-309)||(24939200-24939334)
chr5 (172-292)||(24218516-24218633)
[»] scaffold0485 (2 HSPs)
scaffold0485 (171-419)||(11313-11568)
scaffold0485 (15-141)||(11170-11295)
[»] scaffold0012 (4 HSPs)
scaffold0012 (3-122)||(8513-8632)
scaffold0012 (3-122)||(12685-12804)
scaffold0012 (172-298)||(12854-12977)
scaffold0012 (172-298)||(8745-8868)
[»] scaffold0026 (2 HSPs)
scaffold0026 (3-122)||(17211-17330)
scaffold0026 (205-309)||(17034-17138)
[»] scaffold0220 (2 HSPs)
scaffold0220 (3-114)||(9566-9677)
scaffold0220 (190-309)||(11741-11860)
[»] scaffold0566 (2 HSPs)
scaffold0566 (3-122)||(1461-1580)
scaffold0566 (172-308)||(1275-1411)
[»] chr2 (6 HSPs)
chr2 (172-309)||(24500997-24501134)
chr2 (3-141)||(24501149-24501286)
chr2 (172-317)||(25339516-25339661)
chr2 (15-122)||(25339368-25339475)
chr2 (81-118)||(20354200-20354237)
chr2 (18-72)||(12883-12937)
[»] scaffold0222 (1 HSPs)
scaffold0222 (172-295)||(18509-18632)
[»] scaffold0113 (1 HSPs)
scaffold0113 (172-309)||(38043-38177)
[»] scaffold1184 (1 HSPs)
scaffold1184 (179-213)||(537-571)
[»] scaffold0473 (1 HSPs)
scaffold0473 (18-72)||(12929-12983)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 171 - 419
Target Start/End: Original strand, 15349253 - 15349501
Alignment:
Q  171 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15349253 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatg 15349352  T
Q  271 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttga 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349353 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttga 15349452  T
Q  371 tcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 419  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  15349453 tcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 15349501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 171 - 419
Target Start/End: Original strand, 14687181 - 14687435
Alignment:
Q  171 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 270  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||| |||||||||||||||||||||||     
T  14687181 ttgtacctgtgggttagtaccaacataaagcaaattttccaccgcctccggattagtaatgtccgaattaggtagcataatcaaacaattagctctaata 14687280  T
Q  271 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc 364  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||      |||||| |||||||||||||||||||| |||||||    
T  14687281 attctccatttatattggtaattgtgagtagggtcatgggttctaaggaatgacaaagtagtgagagtatataagtttagataatagttctcctctatcc 14687380  T
Q  365 tcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 419  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14687381 tcttgatcccttgattcacactcaccccaaacttcttagcaataaaagtgatgat 14687435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 171 - 415
Target Start/End: Original strand, 42711184 - 42711434
Alignment:
Q  171 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||     
T  42711184 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaata 42711283  T
Q  271 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc 364  Q
    ||||||||||||||||||||||| |||||| ||||||||||| ||||||| ||||||||      |||||| |||||| ||||||| || ||||||||||    
T  42711284 attctccattcatattggtaattatgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataataattttcatctatcc 42711383  T
Q  365 tcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtga 415  Q
    ||||||||| ||||||||||||||||| |||| ||||||||||||||||||    
T  42711384 tcttgatcctttgattcacactcaccctaaacctcttagcaataaaagtga 42711434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 3 - 141
Target Start/End: Original strand, 15349085 - 15349223
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||    
T  15349085 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaacttcggtttgcatccatgcccaccgttcatcattatagtttcca 15349184  T
Q  103 ccggcttcttgttcatggtgttgtacacctacctcctct 141  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  15349185 ccggctttttgttcatggtgttgtgcacctacctcctct 15349223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 14687013 - 14687149
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||| ||||||||||||||||||||    
T  14687013 tcttagcctgatcatttcaacaccttgtctttgttgctcggtgcatgttcttttaactttggtttgcatccatgcccactgttcatcattatagtttcca 14687112  T
Q  103 ccggcttcttgttcatggtgttgtacacctacctcct 139  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  14687113 ccggctttttgttcatggtgttgtgcacctacctcct 14687149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 45240098 - 45240217
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||    
T  45240098 tcttagcccgatcatttcaacaccttgtctttattgctcgatgcatgttctttgaacttcggtttgcatccatgcccaccgttcatcattatagtttcca 45240197  T
Q  103 ccggcttcttgttcatggtg 122  Q
    ||||||||||||||||||||    
T  45240198 ccggcttcttgttcatggtg 45240217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 10629720 - 10629601
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||    
T  10629720 tcttagcccgatcatttcaacaccttgtctttgttgctcagtgcatgttctttgaacttcggtttgcatccatgcccaccgttcatcattatagtttcca 10629621  T
Q  103 ccggcttcttgttcatggtg 122  Q
    |||||| |||||| ||||||    
T  10629620 ccggctacttgttaatggtg 10629601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 18290993 - 18290874
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| | ||||| |||||||||||||||||||||    
T  18290993 tcttagcccgatcatttcaacaccttgtcattgttgctcggtgcatgttctttgaacttcggtttgcatccatgcccatcgttcatcattatagtttcca 18290894  T
Q  103 ccggcttcttgttcatggtg 122  Q
    ||||||||||||| ||||||    
T  18290893 ccggcttcttgttaatggtg 18290874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 45235472 - 45235585
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||    
T  45235472 tcttagcccgatcatttcaacaccttgtctttattgctcgatgcatgttctttgaacttcggtttgcatccatgcccaccgttcatcattatagtttcca 45235571  T
Q  103 ccggcttcttgttc 116  Q
    ||||||||||||||    
T  45235572 ccggcttcttgttc 45235585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 11497854 - 11497973
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| | |||||||||||||||||||||||||||    
T  11497854 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaacatcggtttgcatccatgcccaccgttcatcattatagtttcca 11497953  T
Q  103 ccggcttcttgttcatggtg 122  Q
    ||| ||| ||||| ||||||    
T  11497954 ccgtcttgttgttaatggtg 11497973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 3 - 141
Target Start/End: Original strand, 42711019 - 42711157
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    ||||| ||||| |||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||| | | |||||||| ||||||||||||||||    
T  42711019 tcttatcccgaccatttcaacaccttgtttttgttgctcgatgcatattatttgaactttggtttgcatccatgtccaccgtttatcattatagtttcca 42711118  T
Q  103 ccggcttcttgttcatggtgttgtacacctacctcctct 141  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  42711119 ccggctttttgttcatggtgttgtgcacctacctcctct 42711157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 172 - 308
Target Start/End: Original strand, 45240267 - 45240404
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaa-ttagctctaatg 270  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||| ||||||||||| | | |||| |||||||||||||| ||| |||||  || ||    
T  45240267 tgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatattcgaatttggtagaataatcaagcaatttagcgttattg 45240366  T
Q  271 attctccattcatattggtaattgtgagtagggtcatg 308  Q
    | |||||| ||||||||||||||||||| |||| ||||    
T  45240367 actctccactcatattggtaattgtgagaagggccatg 45240404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 172 - 308
Target Start/End: Original strand, 11498023 - 11498159
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||| ||||||||||| |   ||||||||||||||||||| |||||| |   | |||    
T  11498023 tgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatttgaattaggtagaataatcaagcaattaacataattga 11498122  T
Q  272 ttctccattcatattggtaattgtgagtagggtcatg 308  Q
     |||||| |||||||||||||||| || |||||||||    
T  11498123 ctctccactcatattggtaattgttagaagggtcatg 11498159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 172 - 295
Target Start/End: Complemental strand, 18290824 - 18290701
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    ||||||||||||||||| |||||||||| ||| ||||| | |||||| ||||||||||| ||  |||||||||||||||||||  |||| ||  || |||    
T  18290824 tgtacctgtgggttagtgccaacataaaccaagttttctatcacctccggattagtaatatctgaattaggtagaataatcaataaatttgcattattga 18290725  T
Q  272 ttctccattcatattggtaattgt 295  Q
     | |||| ||||||||||||||||    
T  18290724 atttccactcatattggtaattgt 18290701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 189 - 298
Target Start/End: Original strand, 11918125 - 11918233
Alignment:
Q  189 accaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatgattctccattcatattgg 288  Q
    ||||||||||| ||| |||||||||||||  || ||||| ||||||  ||||||||||||||||||| ||||||| ||| ||| | |||| |||||||||    
T  11918125 accaacataaaacaatttttccaccaccttcgggttagttatgtccggattaggtagaataatcaaa-aattagccctattgactttccactcatattgg 11918223  T
Q  289 taattgtgag 298  Q
    ||||||||||    
T  11918224 taattgtgag 11918233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 172 - 309
Target Start/End: Complemental strand, 10629551 - 10629417
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    ||||||||||||||||| ||||||||||   | ||||| ||| |||  ||||||||||| ||  |||||||||||||||||||  |||||||  || |||    
T  10629551 tgtacctgtgggttagtgccaacataaa---agttttctaccgccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattga 10629455  T
Q  272 ttctccattcatattggtaattgtgagtagggtcatgg 309  Q
     |||||| ||||||||| ||||||||| |||| |||||    
T  10629454 ctctccactcatattgggaattgtgagaagggccatgg 10629417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 171 - 419
Target Start/End: Original strand, 540168 - 540416
Alignment:
Q  171 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  540168 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctttaatg 540267  T
Q  271 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttga 370  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  540268 attctcctttcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttga 540367  T
Q  371 tcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 419  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  540368 tcccttgattcacactcaccccaaacttcttagcaataaaagtgatgat 540416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 171 - 419
Target Start/End: Original strand, 16327176 - 16327430
Alignment:
Q  171 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||     
T  16327176 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaatagtcaaacaattagctctaata 16327275  T
Q  271 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc 364  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||      |||||| ||||||||||||||||| || |||||||    
T  16327276 attctccattcatattggtaattgtgagtagggtcatgggttataaggaaggacaaagtagtaagagtatataagtttagataatagttttcctctatcc 16327375  T
Q  365 tcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 419  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  16327376 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 16327430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 171 - 419
Target Start/End: Complemental strand, 9581707 - 9581453
Alignment:
Q  171 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||| ||||||     
T  9581707 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccagattagtaatgtccgaattaggtagaataatcaaacaattagttctaata 9581608  T
Q  271 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc 364  Q
    || |||||||||||||| |||||||||||| ||||||||||| ||||||| ||||||||      |||||| |||||| ||||||| || ||||||||||    
T  9581607 atcctccattcatattgataattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataataattttcatctatcc 9581508  T
Q  365 tcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 419  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  9581507 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 9581453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 171 - 419
Target Start/End: Complemental strand, 9729559 - 9729305
Alignment:
Q  171 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 270  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||| ||||||     
T  9729559 ttgtacctgtggattagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaataatcaaacaattagttctaata 9729460  T
Q  271 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc 364  Q
    || |||||||||||||| |||||||||||| ||||||||||| ||||||| ||||||||      |||||| |||||| ||||||| || ||||||||||    
T  9729459 atcctccattcatattgataattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataataattttcatctatcc 9729360  T
Q  365 tcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 419  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  9729359 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 9729305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 171 - 419
Target Start/End: Complemental strand, 4311532 - 4311279
Alignment:
Q  171 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 270  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||     
T  4311532 ttgtacatgtgggttagtaccaacgtaaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaata 4311433  T
Q  271 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc 364  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||| || ||||||||      |||||| |||| ||||||||||||| | |||||||    
T  4311432 attctccattcatattggtaattgtgagtagggccatgggttctaagaaaggacaaagtagtgagagtatataagtctagataatagttcccctctatcc 4311333  T
Q  365 tcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 419  Q
    |||||||| |||||||||||||| |||||||| || ||| |||||| ||||||||    
T  4311332 tcttgatctcttgattcacactc-ccccaaacttcctagaaataaaggtgatgat 4311279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 171 - 419
Target Start/End: Original strand, 8783498 - 8783752
Alignment:
Q  171 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 270  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||| |||||||||||| ||||| || ||||     
T  8783498 ttgtacatgtgggttagtaccaacataaagcaaattttccaccacctccggattagttatgtccgaattagggagaataatcaaaaaattatctgtaata 8783597  T
Q  271 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc 364  Q
    ||||||| |||||||| |||||||||||||||| |||||||| ||||||| | ||||||      |||||| |||| ||||||||||||| | |||||||    
T  8783598 attctcctttcatatttgtaattgtgagtagggccatgggttgtaaggaagggcaaagtagtgagagtatataagtctagataatagttcccctctatcc 8783697  T
Q  365 tcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 419  Q
     |||||||| |||||||||||||||||||||| || |||||||||| ||||||||    
T  8783698 ccttgatccattgattcacactcaccccaaacttcctagcaataaaggtgatgat 8783752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 256 - 419
Target Start/End: Original strand, 14223144 - 14223313
Alignment:
Q  256 caattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagt------ataaaagtttagataat 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||      ||| |||||||||||||    
T  14223144 caattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggctttaaggaatgacaaagtagtgagagtatataagtttagataat 14223243  T
Q  350 agttctcatctatcctcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 419  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14223244 agttctcctctttcctcttgatcccttgattcacactcaccccaaacttcttagcaataaaagtgatgat 14223313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 3 - 141
Target Start/End: Original strand, 14222956 - 14223094
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  14222956 tcttagcccgatcatttcaacaccttgtctttgttgcttggtgcatgttctttgaactttggtttgcatccatgcccaccgttcatcattatagtttcca 14223055  T
Q  103 ccggcttcttgttcatggtgttgtacacctacctcctct 141  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  14223056 ccggctttttgttcatggtgttgtgcacctacctcctct 14223094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 3 - 141
Target Start/End: Original strand, 16327020 - 16327158
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||    
T  16327020 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatccatgcccaccgttcatcattatagtgtcca 16327119  T
Q  103 ccggcttcttgttcatggtgttgtacacctacctcctct 141  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  16327120 ccggctttttgttcatggtgttgtgcacctacctcctct 16327158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 3 - 141
Target Start/End: Original strand, 8783342 - 8783480
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||| | |||||||||||||||||||||||||||    
T  8783342 tcttagcccgaccatttcaacactttgtctttgttgctcggtgcatattctttgaacttcggtttgcatccacgcccaccgttcatcattatagtttcca 8783441  T
Q  103 ccggcttcttgttcatggtgttgtacacctacctcctct 141  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  8783442 ccggattcttgttcatggtgttgtgcacctacctcctct 8783480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 5396101 - 5395982
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||    
T  5396101 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaacttcggtttgcatccatgcccaccgttcatcattatagtttcca 5396002  T
Q  103 ccggcttcttgttcatggtg 122  Q
    ||||||||||||| ||||||    
T  5396001 ccggcttcttgttaatggtg 5395982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 540000 - 540119
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||    
T  540000 tcttagcccgatcatttcaacaccttgtctttgttgctcgatgcatgttctttgaacttcggtttgcatcaatgcctaccgttcatcattatagtttcca 540099  T
Q  103 ccggcttcttgttcatggtg 122  Q
    || |||||||||| ||||||    
T  540100 ccagcttcttgttaatggtg 540119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 10439579 - 10439698
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||    
T  10439579 tcttagcccgatcatttcaacaccttgtctttgatgctcggtgcatgttctttgaacttaagtttgcatcaatgcccaccgttcatcattatagtttcca 10439678  T
Q  103 ccggcttcttgttcatggtg 122  Q
    |||||| |||||| ||||||    
T  10439679 ccggctacttgttaatggtg 10439698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 3 - 141
Target Start/End: Complemental strand, 9581875 - 9581737
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    ||||| ||||| |||||||||||||||| |||||||||| ||| || || |||||||||||||||||||| | |||||||||| ||||||||||||||||    
T  9581875 tcttatcccgaccatttcaacaccttgtttttgttgctcagtgtatattatttgaactttggtttgcatccatgcccaccgtttatcattatagtttcca 9581776  T
Q  103 ccggcttcttgttcatggtgttgtacacctacctcctct 141  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  9581775 ccggctttttgttcatggtgttgtgcacctacctcctct 9581737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 12 - 122
Target Start/End: Complemental strand, 13741385 - 13741275
Alignment:
Q  12 gatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttccaccggcttct 111  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||    
T  13741385 gatcatttcaacaccttgtcttcgttgctcggtgcatattctttgaacttcggtttgcatccatgcccaccgttcatcattatagtttccaccggcttct 13741286  T
Q  112 tgttcatggtg 122  Q
    |||||||||||    
T  13741285 tgttcatggtg 13741275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 3 - 141
Target Start/End: Complemental strand, 4311697 - 4311559
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    ||||| ||||| |||||||||||||||| ||||||||||||||||| ||| |||||||| ||||| |||| | |||||||||||||||||||||||||||    
T  4311697 tcttatcccgaccatttcaacaccttgtttttgttgctcggtgcatattccttgaacttcggtttacatccatgcccaccgttcatcattatagtttcca 4311598  T
Q  103 ccggcttcttgttcatggtgttgtacacctacctcctct 141  Q
    || ||||||| ||||||| ||||| ||||||||||||||    
T  4311597 ccagcttctttttcatggcgttgtgcacctacctcctct 4311559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 12565976 - 12565856
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    ||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||    
T  12565976 tcttagcccgatcgtttcaacactttgtctttgttgcttggtgcatgttctttgaacttcggtttgcatccatgcccaccgttcatcattatagtttcca 12565877  T
Q  103 ccggcttcttgttcatggtgt 123  Q
    || ||||||| || |||||||    
T  12565876 ccagcttcttcttaatggtgt 12565856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 13355212 - 13355090
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggt---ttgcatcaaggcccaccgttcatcattatagttt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||   ||||||| |  |||||||||||||||||||||||    
T  13355212 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaacttcggtttgttgcatccattcccaccgttcatcattatagttt 13355113  T
Q  100 ccaccggcttcttgttcatggtg 122  Q
    ||||||||| |||||| ||||||    
T  13355112 ccaccggctacttgttaatggtg 13355090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 23514041 - 23513923
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    ||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||| | ||||||||||| || ||||||||||||    
T  23514041 tcttagcccgatcatttcaacaccttgtcattgttgctcggtgaatattctttgaactttggtttgcatccatgcccaccgttcttc-ttatagtttcca 23513943  T
Q  103 ccggcttcttgttcatggtg 122  Q
    ||||||| ||||||||||||    
T  23513942 ccggctttttgttcatggtg 23513923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 172 - 309
Target Start/End: Complemental strand, 23513873 - 23513736
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    ||||||||||||||||| ||||||||||  || ||||| |||||||| ||||||||||||||| |||||||||||||||||||  |||||||  || |||    
T  23513873 tgtacctgtgggttagtgccaacataaacaaagttttctaccacctccggattagtaatgtccgaattaggtagaataatcaagtaattagcattattga 23513774  T
Q  272 ttctccattcatattggtaattgtgagtagggtcatgg 309  Q
     |||||| |||||| |||||||||||| |||| |||||    
T  23513773 ctctccactcatataggtaattgtgagaagggccatgg 23513736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 172 - 299
Target Start/End: Original strand, 4462117 - 4462244
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||  || ||||| |||  |  ||||||||||||||||||||||| |||||||||||    
T  4462117 tgtaccagtgggttagtaccaatataaagcaaattttccaccaccttcgggttagttatgaacggattaggtagaataatcaaacaatgagctctaatga 4462216  T
Q  272 ttctccattcatattggtaattgtgagt 299  Q
    || || | |||||||||| |||||||||    
T  4462217 ttttctaatcatattggtcattgtgagt 4462244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 54 - 141
Target Start/End: Complemental strand, 9729676 - 9729589
Alignment:
Q  54 ttgaactttggtttgcatcaaggcccaccgttcatcattatagtttccaccggcttcttgttcatggtgttgtacacctacctcctct 141  Q
    ||||||||||||||||||| | |||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  9729676 ttgaactttggtttgcatccatgcccaccgtttatcattatagtttccaccggctttttgttcatggtgttgtgcacctacctcctct 9729589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 16403708 - 16403601
Alignment:
Q  15 catttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttccaccggcttcttgt 114  Q
    ||||||| |||| ||||||||||| ||||||| | ||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||| ||||||    
T  16403708 catttcagcaccatgtctttgttgttcggtgcttattctttgaactttggtttgcatccatgcccaccgttcatcattatagttcccaccggcatcttgt 16403609  T
Q  115 tcatggtg 122  Q
    | ||||||    
T  16403608 ttatggtg 16403601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 172 - 309
Target Start/End: Complemental strand, 13741225 - 13741088
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    ||||||||||| ||||| ||||||||||   | ||||| |||||||| | ||||||||||||| ||||||||||||||||||| |||||| |  || |||    
T  13741225 tgtacctgtggattagtgccaacataaacatagttttctaccacctccgaattagtaatgtccgaattaggtagaataatcaagcaattatcattattga 13741126  T
Q  272 ttctccattcatattggtaattgtgagtagggtcatgg 309  Q
     |||||| ||||||||||||||||||| |||| |||||    
T  13741125 ctctccactcatattggtaattgtgagaagggccatgg 13741088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 172 - 305
Target Start/End: Complemental strand, 5395944 - 5395811
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||| ||||||||||| ||  |||||||||||||||||||  |||||||  || |||    
T  5395944 tgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatctgaattaggtagaataatcaagaaattagcattattga 5395845  T
Q  272 ttctccattcatattggtaattgtgagtagggtc 305  Q
      ||||| |||| ||||||||||| || ||||||    
T  5395844 cgctccactcattttggtaattgttagaagggtc 5395811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 172 - 309
Target Start/End: Complemental strand, 12565807 - 12565670
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    |||||| ||||||||||||||||||||| ||| ||||| |||||||| | ||||||||| ||  ||||||||  |||||||||  |||||||  || |||    
T  12565807 tgtaccggtgggttagtaccaacataaaccaagttttctaccacctccgaattagtaatatctgaattaggttaaataatcaagaaattagcattattga 12565708  T
Q  272 ttctccattcatattggtaattgtgagtagggtcatgg 309  Q
     |||||| |||||||||||||||| || |||| |||||    
T  12565707 ctctccactcatattggtaattgttagaagggccatgg 12565670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 172 - 312
Target Start/End: Original strand, 10439748 - 10439888
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||   | |||||||| ||  |||||||||||||||||||  ||||| |  || |||    
T  10439748 tgtacctgtgggttagtgccaacataaaccaagttttctaccaccttcagcttagtaatatctgaattaggtagaataatcaagaaattatcattattga 10439847  T
Q  272 ttctccattcatattggtaattgtgagtagggtcatgggtt 312  Q
     |||||| ||||||||||||||||||| ||||  |||||||    
T  10439848 ctctccactcatattggtaattgtgagaagggctatgggtt 10439888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 4461973 - 4462075
Alignment:
Q  16 atttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttccaccggcttcttgtt 115  Q
    ||||||| ||||| |||||||||||| | ||   ||||||| | || |||||||||| | ||||||| |||||||| |||||  |||||| |||||||||    
T  4461973 atttcaaaaccttatctttgttgctcagggctcattctttgtagttcggtttgcatccatgcccaccattcatcatcatagtgcccaccgacttcttgtt 4462072  T
Q  116 cat 118  Q
    |||    
T  4462073 cat 4462075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 171 - 419
Target Start/End: Complemental strand, 27045672 - 27045424
Alignment:
Q  171 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27045672 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatg 27045573  T
Q  271 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttga 370  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27045572 attctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttga 27045473  T
Q  371 tcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 419  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  27045472 tcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 27045424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 27045840 - 27045721
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||    
T  27045840 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaacttcggtttgcatcaatgcccaccattcatcattatagtttcca 27045741  T
Q  103 ccggcttcttgttcatggtg 122  Q
    ||||||||||||| ||||||    
T  27045740 ccggcttcttgttaatggtg 27045721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 21785684 - 21785803
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||    
T  21785684 tcttaacccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaacttcggtttgcatccatgcccaccgttcatcattatagtttcca 21785783  T
Q  103 ccggcttcttgttcatggtg 122  Q
    ||| ||||||||| ||||||    
T  21785784 ccgacttcttgttaatggtg 21785803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 205 - 303
Target Start/End: Original strand, 22626469 - 22626567
Alignment:
Q  205 ttttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaattgtgagtaggg 303  Q
    ||||| |||||| | ||||||||||| ||| ||||||||||||||||||| ||||||||  || ||| |||||| ||||||||||||||||||| ||||    
T  22626469 ttttctaccaccaccggattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggtaattgtgagaaggg 22626567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 172 - 308
Target Start/End: Original strand, 21785853 - 21785986
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    ||||||||||||||||| ||||||||||   | ||||| |||||||  ||||||||||| ||  |||||||||||| ||||||  |||||||  || |||    
T  21785853 tgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaaaaatcaagaaattagcattattga 21785949  T
Q  272 ttctccattcatattggtaattgtgagtagggtcatg 308  Q
     |||||| |||| |||||| |||| || |||| ||||    
T  21785950 ctctccactcatgttggtacttgttagaagggccatg 21785986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 19876943 - 19876971
Alignment:
Q  18 ttcaacaccttgtctttgttgctcggtgc 46  Q
    |||||||||||||||||||||||||||||    
T  19876943 ttcaacaccttgtctttgttgctcggtgc 19876971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 171 - 419
Target Start/End: Original strand, 22062920 - 22063168
Alignment:
Q  171 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22062920 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatg 22063019  T
Q  271 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttga 370  Q
    ||||||||| ||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22063020 attctccatgcatgttggtaattgtgagtagagtcatggtttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttga 22063119  T
Q  371 tcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 419  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  22063120 tcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 22063168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 22062752 - 22062871
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  22062752 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaacttcggtttgcatcaatgcccaccgttcatcattatagtttcca 22062851  T
Q  103 ccggcttcttgttcatggtg 122  Q
    ||||||||||||| ||||||    
T  22062852 ccggcttcttgttaatggtg 22062871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 171 - 419
Target Start/End: Original strand, 19586983 - 19587222
Alignment:
Q  171 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 270  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||               || |||||||||||||||||||||||||||||||||     
T  19586983 ttgtacctgtgggttaataccaacataaatcaaattttccaccacctc---------------cagattaggtagaataatcaaacaattagctctaata 19587067  T
Q  271 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc 364  Q
    ||||||| || |||||||||||||| ||||||  |||||||| ||||||| ||||||||      |||||| |||| |||||||||||||   |||||||    
T  19587068 attctccgtttatattggtaattgtaagtaggtccatgggttctaaggaaggacaaagtagtgagagtatataagtgtagataatagttcctctctatcc 19587167  T
Q  365 tcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 419  Q
    |||||||||||||||||| ||||||||||||| || |||||||||| ||||||||    
T  19587168 tcttgatcccttgattcagactcaccccaaacttcctagcaataaaggtgatgat 19587222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 3 - 141
Target Start/End: Original strand, 19586828 - 19586965
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    ||||||||||  |||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| | |||||||||||||||||||| ||||||    
T  19586828 tcttagcccggccatttcaacaccttgtctttgttgttcggtgcatattctttgaacttcggtttgcatccatgcccaccgttcatcattatattttcca 19586927  T
Q  103 ccggcttcttgttcatggtgttgtacacctacctcctct 141  Q
     ||||||||||||||||||||||| ||||||||||||||    
T  19586928 -cggcttcttgttcatggtgttgtgcacctacctcctct 19586965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 18852990 - 18852871
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||| | ||||||||||||||||||| |||||||    
T  18852990 tcttagcccgatcatttcaacaccttgtctttattgctcggtacatattctttgaactttggtttgcatccatgcccaccgttcatcattatggtttcca 18852891  T
Q  103 ccggcttcttgttcatggtg 122  Q
    ||||||||||||| ||||||    
T  18852890 ccggcttcttgttaatggtg 18852871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 17818489 - 17818370
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||| | || ||||||||||||||||||||||||    
T  17818489 tcttagcccgatcatttcaacaccttgtctttgttgctcggtacatgttctttgaacttcagtttgcatccatgcacaccgttcatcattatagtttcca 17818390  T
Q  103 ccggcttcttgttcatggtg 122  Q
    |||||| |||||| ||||||    
T  17818389 ccggctacttgttaatggtg 17818370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 172 - 325
Target Start/End: Original strand, 23519161 - 23519314
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    |||||| |||||||||| ||||||||||||||||||||||||| ||| |||||||| |||||||||| |||||||||||||||||||||||| ||| | |    
T  23519161 tgtacccgtgggttagttccaacataaagcaaattttccaccatctccggattagttatgtccaaataaggtagaataatcaaacaattagccctattta 23519260  T
Q  272 ttctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgaca 325  Q
     | |||   |||||||||| ||||||| ||||||||||||| ||||||| ||||    
T  23519261 ctttccgcacatattggtagttgtgagaagggtcatgggttataaggaaagaca 23519314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 172 - 309
Target Start/End: Original strand, 18188979 - 18189116
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||| ||||||||| | ||| ||||||||||||||||||| ||||||||  || |||    
T  18188979 tgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtattatccgaattaggtagaataatcaagcaattagcattattga 18189078  T
Q  272 ttctccattcatattggtaattgtgagtagggtcatgg 309  Q
     |||||| ||||||||||||||||||| ||||||||||    
T  18189079 ctctccactcatattggtaattgtgagaagggtcatgg 18189116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 18188814 - 18188922
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    ||||| | ||||||||||||||||||| |||||||    
T  18188814 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaacttcg----gcatccatgcccaccgttcatcattatggtttcca 18188909  T
Q  103 ccggcttcttgtt 115  Q
    |||||| ||||||    
T  18188910 ccggctacttgtt 18188922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 172 - 298
Target Start/End: Complemental strand, 17818320 - 17818194
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||  ||||||||||| ||  |||||||||||||||||||  |||||||  || |||    
T  17818320 tgtacctgtgggttagtgccaacataaaccaagttttctaccacctacggattagtaatatctgaattaggtagaataatcaagaaattagcattattga 17818221  T
Q  272 ttctccattcatattggtaattgtgag 298  Q
     |||||| |||||||||||||||||||    
T  17818220 ctctccactcatattggtaattgtgag 17818194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 23519005 - 23519107
Alignment:
Q  16 atttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttccaccggcttcttgtt 115  Q
    |||||||||||||||||||||| |||||||| | |||||||||||| |||||||||| | ||||||| | ||||||||||||| |||||| |||||||||    
T  23519005 atttcaacaccttgtctttgttactcggtgcttattctttgaacttcggtttgcatccatgcccaccatacatcattatagttcccaccgacttcttgtt 23519104  T
Q  116 cat 118  Q
    |||    
T  23519105 cat 23519107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 171 - 309
Target Start/End: Complemental strand, 18852822 - 18852688
Alignment:
Q  171 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 270  Q
    |||||||||||||||||| ||||||||||   ||||||| |||| ||| ||||||||||| ||  ||||||||||||||||| || || || |  || |     
T  18852822 ttgtacctgtgggttagtgccaacataaa---aattttctaccatctccggattagtaatatctgaattaggtagaataatc-aagaaataacattattt 18852727  T
Q  271 attctccattcatattggtaattgtgagtagggtcatgg 309  Q
    | |||||| ||||||||||||||||||| |||| |||||    
T  18852726 actctccactcatattggtaattgtgagaagggccatgg 18852688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 29685338 - 29685293
Alignment:
Q  171 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacc 216  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  29685338 ttgtacctgtgggttagtactaacataaagcaaattttccaccacc 29685293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 25966589 - 25966485
Alignment:
Q  18 ttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttccaccggcttcttgttca 117  Q
    ||||||||||||||||||||||||||||| | | || | |||||  ||||||||| | || || | ||||| || |||||| ||| ||||||||||||||    
T  25966589 ttcaacaccttgtctttgttgctcggtgcttatcctctcaacttcagtttgcatccatgctcatctttcattatcatagttaccaacggcttcttgttca 25966490  T
Q  118 tggtg 122  Q
    |||||    
T  25966489 tggtg 25966485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 29685511 - 29685446
Alignment:
Q  16 atttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccac 81  Q
    ||||||||||||||||||||||||||||||  | | |||||||||| |||||||||| | ||||||    
T  29685511 atttcaacaccttgtctttgttgctcggtgattatcctttgaacttcggtttgcatccatgcccac 29685446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 24390285 - 24390326
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccacc 213  Q
    |||||||||  |||||||||| ||||||||||||||||||||    
T  24390285 tgtacctgtttgttagtaccagcataaagcaaattttccacc 24390326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 171 - 419
Target Start/End: Complemental strand, 6813667 - 6813419
Alignment:
Q  171 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6813667 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatg 6813568  T
Q  271 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttga 370  Q
    ||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6813567 attctccatgcatattggtaattgtgagtagagtcatggtttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttga 6813468  T
Q  371 tcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 419  Q
    |||||||||||| ||||||| ||||| ||||||||||||||||||||||    
T  6813467 tcccttgattcatactcacctcaaacttcttagcaataaaagtgatgat 6813419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 171 - 422
Target Start/End: Original strand, 12777913 - 12778170
Alignment:
Q  171 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||| ||||||     
T  12777913 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccgaattagtaatgtccgaattaggtagaataatcaaacaattagttctaata 12778012  T
Q  271 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc 364  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||      |||| | |||||| ||||||| || || |||||||    
T  12778013 attctccattcatattgataattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtaaataagtttggataataattttcctctatcc 12778112  T
Q  365 tcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgatgtc 422  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||    
T  12778113 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagggatgatgtc 12778170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 171 - 419
Target Start/End: Complemental strand, 15024508 - 15024254
Alignment:
Q  171 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 270  Q
    |||||| ||||| ||||||||||||||| ||||||||||||||||||| |||||||| |||||   ||||||||||||||| ||||||||||||||| |     
T  15024508 ttgtacatgtggattagtaccaacataatgcaaattttccaccacctccggattagttatgtctggattaggtagaataataaaacaattagctctatta 15024409  T
Q  271 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc 364  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||      |||||| |||| ||||||||||| | | |||||||    
T  15024408 attctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtatagataatagtacccctctatcc 15024309  T
Q  365 tcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 419  Q
    |||||||||||||||||||||||||||||||| |  |||||||||||||||||||    
T  15024308 tcttgatcccttgattcacactcaccccaaactttctagcaataaaagtgatgat 15024254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 13096683 - 13096564
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  13096683 tcttagcccgatcatttcaacaccttgtctttattgctcggtgcatgttctttgaactttggtttgcatccatgcccaccgttcatcattatagtttcca 13096584  T
Q  103 ccggcttcttgttcatggtg 122  Q
    ||||||||||||| ||||||    
T  13096583 ccggcttcttgttaatggtg 13096564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 6813835 - 6813716
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||| |||||||||||||||||||    
T  6813835 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaacttcggtttgcattaatgcccaccattcatcattatagtttcca 6813736  T
Q  103 ccggcttcttgttcatggtg 122  Q
    ||||||||||||| ||||||    
T  6813735 ccggcttcttgttaatggtg 6813716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 9362198 - 9362317
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||    
T  9362198 tcttagcccgatcatttcaacaccttgtctttattgctcggtgcatgttctttgaactttggtttgcatccatgcccaccgttcatcattatagttgcca 9362297  T
Q  103 ccggcttcttgttcatggtg 122  Q
    ||||||||||||| ||||||    
T  9362298 ccggcttcttgttaatggtg 9362317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 20560002 - 20559883
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  20560002 tcttagcccgatcattttaacaccttgtctttattgctcggtgcatgttctttgaactttggtttgcatccatgcccaccgttcatcattatagtttcca 20559903  T
Q  103 ccggcttcttgttcatggtg 122  Q
    ||||||||||||| ||||||    
T  20559902 ccggcttcttgttaatggtg 20559883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 20562310 - 20562191
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  20562310 tcttagcccgatcattttaacaccttgtctttattgctcggtgcatgttctttgaactttggtttgcatccatgcccaccgttcatcattatagtttcca 20562211  T
Q  103 ccggcttcttgttcatggtg 122  Q
    ||||||||||||| ||||||    
T  20562210 ccggcttcttgttaatggtg 20562191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 20564618 - 20564499
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  20564618 tcttagcccgatcattttaacaccttgtctttattgctcggtgcatgttctttgaactttggtttgcatccatgcccaccgttcatcattatagtttcca 20564519  T
Q  103 ccggcttcttgttcatggtg 122  Q
    ||||||||||||| ||||||    
T  20564518 ccggcttcttgttaatggtg 20564499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 3 - 141
Target Start/End: Original strand, 3246757 - 3246895
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||  | |||||||||||||||||||||||||||    
T  3246757 tcttagcccgattatttcaacaccttgtctttgttgctcggtgcatattcgttgaacttcggtttgcatgcatgcccaccgttcatcattatagtttcca 3246856  T
Q  103 ccggcttcttgttcatggtgttgtacacctacctcctct 141  Q
     ||||||||||||||||||| ||| ||||||||||||||    
T  3246857 tcggcttcttgttcatggtgatgtgcacctacctcctct 3246895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 13090048 - 13090167
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    |||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||    
T  13090048 tcttagcccggtcatttcaacaccttgtctttattgctcggttcatgttctttgaactttggtttgcatcgatgcccaccgttcattattatagtttcca 13090147  T
Q  103 ccggcttcttgttcatggtg 122  Q
    ||||||||||||| ||||||    
T  13090148 ccggcttcttgttaatggtg 13090167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 3 - 141
Target Start/End: Original strand, 12777745 - 12777883
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    ||||| ||||| ||||||||||||| || |||||||||| |||||| || |||||||||||||||||||| | |||||||||| ||||||||||||||||    
T  12777745 tcttatcccgaccatttcaacacctagtttttgttgctcagtgcatattatttgaactttggtttgcatccatgcccaccgtttatcattatagtttcca 12777844  T
Q  103 ccggcttcttgttcatggtgttgtacacctacctcctct 141  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  12777845 ccggctttttgttcatggtgttgtgcacctacctcctct 12777883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 15024590 - 15024526
Alignment:
Q  77 cccaccgttcatcattatagtttccaccggcttcttgttcatggtgttgtacacctacctcctct 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15024590 cccaccgttcatcattatagtttccaccggcttcttgttcatggtgttgtgcacctacctcctct 15024526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 172 - 308
Target Start/End: Complemental strand, 20562153 - 20562017
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    ||||||||||||||||| |||||| ||| | | ||||| |||||||| | ||||||||| ||  |||||||||||||||||||  ||||||   || |||    
T  20562153 tgtacctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaagaaattagtagtattga 20562054  T
Q  272 ttctccattcatattggtaattgtgagtagggtcatg 308  Q
     |||||| ||||||||||||||||||| |||| ||||    
T  20562053 ctctccactcatattggtaattgtgagaagggccatg 20562017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 172 - 308
Target Start/End: Complemental strand, 20564461 - 20564325
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    ||||||||||||||||| |||||| ||| | | ||||| |||||||| | ||||||||| ||  |||||||||||||||||||  ||||||   || |||    
T  20564461 tgtacctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaagaaattagtagtattga 20564362  T
Q  272 ttctccattcatattggtaattgtgagtagggtcatg 308  Q
     |||||| ||||||||||||||||||| |||| ||||    
T  20564361 ctctccactcatattggtaattgtgagaagggccatg 20564325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 172 - 308
Target Start/End: Complemental strand, 20559845 - 20559709
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    |||| |||||||||||| |||||| ||| | | ||||| |||||||| | ||||||||| ||  |||||||||||||||||||  ||||||   || |||    
T  20559845 tgtatctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaagaaattagtagtattga 20559746  T
Q  272 ttctccattcatattggtaattgtgagtagggtcatg 308  Q
     |||||| ||||||||||||||||||| |||| ||||    
T  20559745 ctctccactcatattggtaattgtgagaagggccatg 20559709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 172 - 309
Target Start/End: Original strand, 13090217 - 13090351
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    ||||||||||||||||| ||||||||||   | ||||| |||||||  ||||||||||| ||  |||||||||||||||||||  |||||||  || |||    
T  13090217 tgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattga 13090313  T
Q  272 ttctccattcatattggtaattgtgagtagggtcatgg 309  Q
     || ||| ||||||||| ||||||||| |||| |||||    
T  13090314 ctcaccactcatattgggaattgtgagaagggccatgg 13090351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 172 - 309
Target Start/End: Original strand, 9362367 - 9362501
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    ||||||||||||||||| ||||||||||   | ||||| |||||||  ||||||||||| |   |||||||||||||||||||  |||||||  || |||    
T  9362367 tgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatttgaattaggtagaataatcaagaaattagcattattga 9362463  T
Q  272 ttctccattcatattggtaattgtgagtagggtcatgg 309  Q
     |||||| |||||||||  |||||||| |||| |||||    
T  9362464 ctctccactcatattggggattgtgagaagggccatgg 9362501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 172 - 309
Target Start/End: Complemental strand, 13096514 - 13096380
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    |||||||||||||||||  |||||||||   | ||||| |||||||  ||||||||||| ||  |||||||||||||||||||  ||||||   || |||    
T  13096514 tgtacctgtgggttagtgtcaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagaattattga 13096418  T
Q  272 ttctccattcatattggtaattgtgagtagggtcatgg 309  Q
     |||||| |||| |||| ||||||||| |||| |||||    
T  13096417 ctctccactcatgttgggaattgtgagaagggccatgg 13096380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 20154926 - 20154880
Alignment:
Q  76 gcccaccgttcatcattatagtttccaccggcttcttgttcatggtg 122  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||    
T  20154926 gcccaccgttcatcattatagtttccaccagcttcttgttaatggtg 20154880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 3246922 - 3246968
Alignment:
Q  171 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacct 217  Q
    |||||||||||||||||||| || ||||| |||||||||||||||||    
T  3246922 ttgtacctgtgggttagtacaaaaataaaacaaattttccaccacct 3246968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 10145956 - 10145886
Alignment:
Q  18 ttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcat 88  Q
    |||||||||||| |||||||||||||||| | | ||||| || | |||||||||| | ||||| |||||||    
T  10145956 ttcaacaccttgcctttgttgctcggtgcttatcctttgtacctcggtttgcatccatgcccatcgttcat 10145886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 13137438 - 13137508
Alignment:
Q  18 ttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcat 88  Q
    |||||||||||| |||||||||||||||| | | ||||| || | |||||||||| | ||||| |||||||    
T  13137438 ttcaacaccttgcctttgttgctcggtgcttatcctttgtacctcggtttgcatccatgcccatcgttcat 13137508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 171 - 419
Target Start/End: Complemental strand, 29566 - 29312
Alignment:
Q  171 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 270  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  29566 ttgtacctgtgggttagtaccaacataaagcaaattttctaccacctccggattagtaatgtccgaattaggtagaataatcatacaattagctctaatg 29467  T
Q  271 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||    
T  29466 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtgagagtataaaagtttagataatagttctcatctatcc 29367  T
Q  365 tcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 419  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  29366 tcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 29312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 3 - 141
Target Start/End: Complemental strand, 29734 - 29596
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    |||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| | |||||||||||||||||||||||||||    
T  29734 tcttagtccgatcatttcaacaccttgtctttgttgctcggtgtattttctttgaactttgttttgcatccatgcccaccgttcatcattatagtttcca 29635  T
Q  103 ccggcttcttgttcatggtgttgtacacctacctcctct 141  Q
    ||||||| ||||| |||||||||| ||||||||||||||    
T  29634 ccggctttttgtttatggtgttgtgcacctacctcctct 29596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 171 - 419
Target Start/End: Complemental strand, 20001103 - 20000852
Alignment:
Q  171 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  20001103 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccagattagtaatgtccgaattaggtagaataatcaaacaattagctctaatg 20001004  T
Q  271 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||    
T  20001003 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtgagagtataaaagtttagataatagttctcatctatcc 20000904  T
Q  365 tcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 419  Q
    |||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  20000903 tcttgatcccttgattcacactcaccccaaa---cttagcaataaaagtgatgat 20000852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 3 - 141
Target Start/End: Complemental strand, 20001271 - 20001133
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  20001271 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatccatgcccaccgttcatcattatagtttcca 20001172  T
Q  103 ccggcttcttgttcatggtgttgtacacctacctcctct 141  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  20001171 ccggctttttgttcatggtgttgtgcacctacctcctct 20001133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 17619714 - 17619595
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||    
T  17619714 tcttagcccgatcatttcaacaccttgtctttattgctcggtgcatgttctttgaactttgatttgcatccatgcccaccgttcatcattatagtttcca 17619615  T
Q  103 ccggcttcttgttcatggtg 122  Q
    ||||||||||||| ||||||    
T  17619614 ccggcttcttgttaatggtg 17619595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 20040310 - 20040429
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  20040310 tcttagcctgatcatttcaacaccttgtctttattgctcggtgcatgttctttgaacttcggtttgcatcaatgcccaccgttcatcattatagtttcca 20040409  T
Q  103 ccggcttcttgttcatggtg 122  Q
    ||||||||||||| ||||||    
T  20040410 ccggcttcttgttaatggtg 20040429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 3 - 121
Target Start/End: Original strand, 21855017 - 21855135
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  21855017 tcttagcccgatcatttcaacatcttgtctttattgctcggtgcatgttctttgaactttggtttgcatccatgcccaccgttcatcattatagtttcca 21855116  T
Q  103 ccggcttcttgttcatggt 121  Q
    ||||||||||||| |||||    
T  21855117 ccggcttcttgttaatggt 21855135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 172 - 308
Target Start/End: Original strand, 20040479 - 20040615
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    ||||||||||||||||| |||||||||| | | ||||| |||||||||||||||||||| ||  |||||||||||||||||||  ||||||   || |||    
T  20040479 tgtacctgtgggttagtgccaacataaacctagttttctaccacctctggattagtaatatctgaattaggtagaataatcaagaaattagtagtattga 20040578  T
Q  272 ttctccattcatattggtaattgtgagtagggtcatg 308  Q
     |||||| ||||||||||||||||||| |||| ||||    
T  20040579 ctctccactcatattggtaattgtgagaagggccatg 20040615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 172 - 312
Target Start/End: Original strand, 21855186 - 21855323
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    ||||||||| ||||||| ||||||||||   | ||||| |||||||  ||||||||||| ||  |||||||||||||||||||  |||||||  || |||    
T  21855186 tgtacctgtaggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattga 21855282  T
Q  272 ttctccattcatattggtaattgtgagtagggtcatgggtt 312  Q
     |||||| ||||||||||||||||||| ||||| |||||||    
T  21855283 ctctccactcatattggtaattgtgagaagggttatgggtt 21855323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 172 - 308
Target Start/End: Complemental strand, 17619545 - 17619412
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    ||||||||||||||||| ||||||||||   | ||||| |||||||  ||||||||||| ||  |||||||||||||||||||  |||||||  || |||    
T  17619545 tgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattga 17619449  T
Q  272 ttctccattcatattggtaattgtgagtagggtcatg 308  Q
     |||||| ||||||||| ||||||||| |||| ||||    
T  17619448 ctctccactcatattggaaattgtgagaagggccatg 17619412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 22034799 - 22034853
Alignment:
Q  18 ttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatc 72  Q
    |||||||||||| |||||||||||||||| | ||||||| || | ||||||||||    
T  22034799 ttcaacaccttgcctttgttgctcggtgcttattctttgtacctcggtttgcatc 22034853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 22903456 - 22903351
Alignment:
Q  17 tttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttccaccggcttcttgttc 116  Q
    ||||| ||||||||||||||||||| |||| | ||||||| | || | |||||||| | | |||||| || |  | ||| | ||||||||||||||| ||    
T  22903456 tttcagcaccttgtctttgttgctcagtgcttattctttggatttcgttttgcatccatgtccaccgatccttgtcatattgtccaccggcttcttggtc 22903357  T
Q  117 atggtg 122  Q
    ||||||    
T  22903356 atggtg 22903351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 21955024 - 21954996
Alignment:
Q  18 ttcaacaccttgtctttgttgctcggtgc 46  Q
    |||||||||||||||||||||||||||||    
T  21955024 ttcaacaccttgtctttgttgctcggtgc 21954996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 171 - 419
Target Start/End: Original strand, 51962 - 52216
Alignment:
Q  171 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||| |||||||||||||||||||     
T  51962 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggaatagtaatgtccgaattaggtagaatagtcaaacaattagctctaata 52061  T
Q  271 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc 364  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||      |||||| ||||||||||||||||| || |||||||    
T  52062 attctccattcatattggtaattgtgagtagggtcatgggttataaggaaggacaaagtagtaagagtatataagtttagataatagttttcctctatcc 52161  T
Q  365 tcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 419  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  52162 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 52216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 3 - 141
Target Start/End: Original strand, 51788 - 51926
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  51788 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatccatgcccaccgttcatcattatagtttcca 51887  T
Q  103 ccggcttcttgttcatggtgttgtacacctacctcctct 141  Q
    |||| || |||||||||||||||| ||||||||||||||    
T  51888 ccggatttttgttcatggtgttgtgcacctacctcctct 51926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 164; Significance: 2e-87; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 171 - 419
Target Start/End: Original strand, 23712116 - 23712370
Alignment:
Q  171 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 270  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| ||||||     
T  23712116 ttgtacctgtgggttaggaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaaaaattagttctaata 23712215  T
Q  271 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc 364  Q
    || ||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||      |||||| |||||| ||||||| || ||||||||||    
T  23712216 atcctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataataattttcatctatcc 23712315  T
Q  365 tcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 419  Q
    ||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||    
T  23712316 tcttgatcccttgattcacactcaccctaaacctcttagcaacaaaagtgatgat 23712370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 3 - 141
Target Start/End: Original strand, 20446089 - 20446227
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  20446089 tcttagcccgatcatttcaacaccttgtctttattgctcggtgcatgttctttgaactttggtttgcatccatgcccaccgttcatcattatagtttcca 20446188  T
Q  103 ccggcttcttgttcatggtgttgtacacctacctcctct 141  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  20446189 ccggcttcttgttaatggtgttgtgcacctacctcctct 20446227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 23601881 - 23602000
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  23601881 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaacttcggtttgcatcaatgcccaccgttcatcattatagtttcca 23601980  T
Q  103 ccggcttcttgttcatggtg 122  Q
    |||||| |||||| ||||||    
T  23601981 ccggctacttgttaatggtg 23602000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 22828000 - 22828119
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||    
T  22828000 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaacttcggtttgcatccatgcccaccgttcatcattatagtttcca 22828099  T
Q  103 ccggcttcttgttcatggtg 122  Q
     |||||||||||| ||||||    
T  22828100 tcggcttcttgttaatggtg 22828119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 18487304 - 18487423
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| | |||||||||||||||||||||||||||    
T  18487304 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaacatcggtttgcatccatgcccaccgttcatcattatagtttcca 18487403  T
Q  103 ccggcttcttgttcatggtg 122  Q
    ||| ||||||||| ||||||    
T  18487404 ccgacttcttgttaatggtg 18487423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 24939503 - 24939384
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||    
T  24939503 tcttagcccgatcatttcaacaccttgtctttgtttctcggtgcatgttctttgaacttcggtttgcatccatgcccaccgttcatcattatagtttcca 24939404  T
Q  103 ccggcttcttgttcatggtg 122  Q
    |||||| |||||| ||||||    
T  24939403 ccggctacttgttaatggtg 24939384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 3 - 141
Target Start/End: Original strand, 23711945 - 23712083
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    ||||| ||||| |||||||||||||||| |||||||||||||| || || |||||||||||||||||||| | |||||||||| ||||||||||||||||    
T  23711945 tcttatcccgaccatttcaacaccttgtttttgttgctcggtgtatattatttgaactttggtttgcatccatgcccaccgtttatcattatagtttcca 23712044  T
Q  103 ccggcttcttgttcatggtgttgtacacctacctcctct 141  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  23712045 ccggctttttgttcatggtgttgtgcacctacctcctct 23712083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 21282151 - 21282270
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | || ||||||||||||||||||||||||    
T  21282151 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaacttcggtttgcatccatgcacaccgttcatcattatagtttcca 21282250  T
Q  103 ccggcttcttgttcatggtg 122  Q
    || ||| |||||| ||||||    
T  21282251 ccagctacttgttaatggtg 21282270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 24218802 - 24218683
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  24218802 tcttagcccgatcatttcaacaccttgtctttgttgcttggtacatattctttgaactttggtttgcatccatgcccaccgttcatcattatagtttcca 24218703  T
Q  103 ccggcttcttgttcatggtg 122  Q
     |||||| ||||| ||||||    
T  24218702 tcggctttttgttaatggtg 24218683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 172 - 303
Target Start/End: Original strand, 20446255 - 20446386
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||  ||||||||||| ||  |||||||||||||||||||  |||||||  || |||    
T  20446255 tgtacctgtgggttagtgccaacataaaccaagttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattga 20446354  T
Q  272 ttctccattcatattggtaattgtgagtaggg 303  Q
     |||||| ||||||||||||||||||| ||||    
T  20446355 ctctccactcatattggtaattgtgagaaggg 20446386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 172 - 309
Target Start/End: Original strand, 21282320 - 21282458
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaa-ttagctctaatg 270  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||| ||||||||||| | | |||| |||||||||||||| ||| |||||  || ||    
T  21282320 tgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatattcgaatttggtagaataatcaagcaatttagcgttattg 21282419  T
Q  271 attctccattcatattggtaattgtgagtagggtcatgg 309  Q
    | |||||| ||||||||||||||||||| ||||| ||||    
T  21282420 actctccactcatattggtaattgtgagaagggttatgg 21282458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 172 - 295
Target Start/End: Original strand, 18487473 - 18487596
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||| |||||| |||| ||  |||||||||||||||||||  |||||||  || |||    
T  18487473 tgtacctgtgggttagtgccaacataaaccaagttttctaccacctcaggattaataatatctgaattaggtagaataatcaagaaattagcattattga 18487572  T
Q  272 ttctccattcatattggtaattgt 295  Q
     |||||| ||||||||||||||||    
T  18487573 ctctccactcatattggtaattgt 18487596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 172 - 298
Target Start/End: Original strand, 23602050 - 23602173
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    ||||||||||||||||| ||||||||||   | ||||| |||||||  ||||||||||| ||  |||||||||||||||||||  |||||||  || |||    
T  23602050 tgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattga 23602146  T
Q  272 ttctccattcatattggtaattgtgag 298  Q
     || ||| ||||||||| |||||||||    
T  23602147 ctcgccactcatattgggaattgtgag 23602173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 172 - 309
Target Start/End: Complemental strand, 24939334 - 24939200
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    ||||||||||||||||| ||||||||||   | ||||| |||||||  | ||||||||| ||  |||||||||||||||||||  |||||||  || |||    
T  24939334 tgtacctgtgggttagtgccaacataaa---agttttctaccaccttcgaattagtaatatctgaattaggtagaataatcaagaaattagcattattga 24939238  T
Q  272 ttctccattcatattggtaattgtgagtagggtcatgg 309  Q
     || ||| ||||||||| ||||||||| |||| |||||    
T  24939237 ctcgccactcatattgggaattgtgagaagggccatgg 24939200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 172 - 292
Target Start/End: Complemental strand, 24218633 - 24218516
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    ||||| ||||||||||| |||||||||    | ||||| |||| ||| ||||||||||| ||  |||||||||||||||||||  |||||||  || |||    
T  24218633 tgtacatgtgggttagtgccaacataat---agttttctaccatctccggattagtaatatctgaattaggtagaataatcaagaaattagcattattga 24218537  T
Q  272 ttctccattcatattggtaat 292  Q
     |||||| |||||||||||||    
T  24218536 ctctccactcatattggtaat 24218516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0485 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 171 - 419
Target Start/End: Original strand, 11313 - 11568
Alignment:
Q  171 ttgtacctgtgggttagtaccaacataaagcaaatttt-ccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaat 269  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||| ||||||  |||||||||||||||||||||||||||||||||    
T  11313 ttgtacctgtgggttagtaccaacataaagcaaatttttccaccacctccagattagttatgtccggattaggtagaataatcaaacaattagctctaat 11412  T
Q  270 gattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtag------tataaaagtttagataatagttctcatctatc 363  Q
     |||||||| ||||||||||||||||||||| ||||||||||| ||||||| ||||||||||      |||| |||| ||||||||||||| | ||||||    
T  11413 aattctccactcatattggtaattgtgagtatggtcatgggttctaaggaaggacaaagtagtgagattatataagtctagataatagttcccctctatc 11512  T
Q  364 ctcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 419  Q
    ||||||||||||||||||||||||||||||||| |  |||||||||| ||||||||    
T  11513 ctcttgatcccttgattcacactcaccccaaactttctagcaataaaggtgatgat 11568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0485; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 11170 - 11295
Alignment:
Q  15 catttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttccaccggcttcttgt 114  Q
    ||||||||||||||||||||||||||| || | | |||||||||| |||||||||||| | ||||||||||||||||||||| |||||||||||| ||||    
T  11170 catttcaacaccttgtctttgttgctcagtacttattctttgaacattggtttgcatccatgcccaccgttcatcattatagcttccaccggctt-ttgt 11268  T
Q  115 tcatggtgttgtacacctacctcctct 141  Q
    ||||||| |||| ||| ||||||||||    
T  11269 tcatggtattgtgcacgtacctcctct 11295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 104; Significance: 1e-51; HSPs: 4)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 8513 - 8632
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  8513 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatattctttgaactttggtttgcatccatgcccaccgttcatcattatagtttcca 8612  T
Q  103 ccggcttcttgttcatggtg 122  Q
    ||||||||||||| ||||||    
T  8613 ccggcttcttgttaatggtg 8632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 12685 - 12804
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  12685 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatattctttgaactttggtttgcatccatgcccaccgttcatcattatagtttcca 12784  T
Q  103 ccggcttcttgttcatggtg 122  Q
    ||||||||||||| ||||||    
T  12785 ccggcttcttgttaatggtg 12804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 298
Target Start/End: Original strand, 12854 - 12977
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    ||||||||||||||||| |||||||||   || ||||| ||||||||  |||||||||| || || |||||||||||||| |   |||||||  || |||    
T  12854 tgtacctgtgggttagtgccaacataa---aagttttctaccacctccagattagtaatatctaatttaggtagaataataaggaaattagcattattga 12950  T
Q  272 ttctccattcatattggtaattgtgag 298  Q
     |||| | |||||||||||| ||||||    
T  12951 ctctctactcatattggtaactgtgag 12977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 298
Target Start/End: Original strand, 8745 - 8868
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    ||||| ||||||||||| ||||||||||   | ||||| ||||||||  |||||||||| || || |||||||||||||| |   |||||||  || |||    
T  8745 tgtacatgtgggttagtgccaacataaa---agttttctaccacctccagattagtaatatctaatttaggtagaataataaggaaattagcattattga 8841  T
Q  272 ttctccattcatattggtaattgtgag 298  Q
     |||| | |||||||||||| ||||||    
T  8842 ctctctactcatattggtaactgtgag 8868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 17330 - 17211
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||    
T  17330 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaacttcggtttgcatccatgcccaccgttcatcattatagtttcca 17231  T
Q  103 ccggcttcttgttcatggtg 122  Q
    |||||| |||||| ||||||    
T  17230 ccggctacttgttaatggtg 17211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 205 - 309
Target Start/End: Complemental strand, 17138 - 17034
Alignment:
Q  205 ttttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaattgtgagtagggt 304  Q
    ||||| |||||||||| ||||||||| ||| ||||||||||||||||||| ||||||||  || ||| |||||| ||||||||||||||||||| |||||    
T  17138 ttttctaccacctctgtattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggtaattgtgagaagggt 17039  T
Q  305 catgg 309  Q
    |||||    
T  17038 catgg 17034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 9566 - 9677
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||    
T  9566 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaacttcggtttgcatcaatgccaaccgttcatcattatagtttcca 9665  T
Q  103 ccggcttcttgt 114  Q
    |||||| |||||    
T  9666 ccggctacttgt 9677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 190 - 309
Target Start/End: Original strand, 11741 - 11860
Alignment:
Q  190 ccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatgattctccattcatattggt 289  Q
    |||||||||| ||| ||||| ||||||||  |||||||||| ||| ||||||||||||||||||| ||||||||  || ||| |||||| ||||||||||    
T  11741 ccaacataaaccaagttttctaccacctccagattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggt 11840  T
Q  290 aattgtgagtagggtcatgg 309  Q
    ||||||||| ||||||||||    
T  11841 aattgtgagaagggtcatgg 11860  T

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Target: scaffold0566 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: scaffold0566
Description:

Target: scaffold0566; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 1580 - 1461
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| | |||||||||||||||||||||||||||    
T  1580 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaacatcggtttgcatccatgcccaccgttcatcattatagtttcca 1481  T
Q  103 ccggcttcttgttcatggtg 122  Q
    |||| || ||||| ||||||    
T  1480 ccgggttgttgttaatggtg 1461  T

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Target: scaffold0566; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 172 - 308
Target Start/End: Complemental strand, 1411 - 1275
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    ||||||||||||||||| |||||||||| ||| ||||| ||||||||  |||||||||| ||  |||||||||||||||||||  |||||||   | |||    
T  1411 tgtacctgtgggttagtgccaacataaaccaagttttctaccacctccagattagtaatatctgaattaggtagaataatcaagaaattagcataattga 1312  T
Q  272 ttctccattcatattggtaattgtgagtagggtcatg 308  Q
     |||||| |||||||||||||||| || |||||||||    
T  1311 ctctccactcatattggtaattgttagaagggtcatg 1275  T

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Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 172 - 309
Target Start/End: Complemental strand, 24501134 - 24500997
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||| ||||||||||||||| ||||||||||||||||||| ||||||||  || |||    
T  24501134 tgtacctgtgggttagtgccaacataaatcaagttttctaccacctccggattagtaatgtccgaattaggtagaataatcaagcaattagcattattga 24501035  T
Q  272 ttctccattcatattggtaattgtgagtagggtcatgg 309  Q
     |||||| | ||||||||||||||||| |||| |||||    
T  24501034 ctctccactaatattggtaattgtgagaagggccatgg 24500997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 3 - 141
Target Start/End: Complemental strand, 24501286 - 24501149
Alignment:
Q  3 tcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttcca 102  Q
    ||||||||||  ||||||||||||||||||||||| |||||||||| |||||||||| || | ||||||| | ||||||  ||||||||||| | |||||    
T  24501286 tcttagcccggccatttcaacaccttgtctttgtttctcggtgcatattctttgaac-ttcgattgcatccatgcccacaattcatcattattgcttcca 24501188  T
Q  103 ccggcttcttgttcatggtgttgtacacctacctcctct 141  Q
    ||||||||||||||||||||||||  || ||||||||||    
T  24501187 ccggcttcttgttcatggtgttgtgtacgtacctcctct 24501149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 172 - 317
Target Start/End: Original strand, 25339516 - 25339661
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    ||||| |||| |||||| ||||||||||| |||||||||||||||||  ||||||| ||||||  ||||||||||||||||||||||||||| ||| |||    
T  25339516 tgtacatgtgagttagtgccaacataaagaaaattttccaccacctccagattagttatgtccggattaggtagaataatcaaacaattagccctattga 25339615  T
Q  272 ttctccattcatattggtaattgtgagtagggtcatgggttttaag 317  Q
       |||| |||||||||||||||||||| ||| |||| ||| ||||    
T  25339616 ccttccactcatattggtaattgtgagttgggccatgagttctaag 25339661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 25339368 - 25339475
Alignment:
Q  15 catttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatcaaggcccaccgttcatcattatagtttccaccggcttcttgt 114  Q
    |||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||| |  ||||| ||||||||||| |||  |||||||||||||||    
T  25339368 catttcaacaccttgtatttgttgctcggtgcttattctttgaactttggtttgcatccattcccactgttcatcattaaagtgcccaccggcttcttgt 25339467  T
Q  115 tcatggtg 122  Q
    ||||||||    
T  25339468 tcatggtg 25339475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 118
Target Start/End: Complemental strand, 20354237 - 20354200
Alignment:
Q  81 ccgttcatcattatagtttccaccggcttcttgttcat 118  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20354237 ccgttcatcattatagtttccaccggcttcttgttcat 20354200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 12883 - 12937
Alignment:
Q  18 ttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatc 72  Q
    ||||||||||||||||||||||||||||| | ||||||| || | ||||||||||    
T  12883 ttcaacaccttgtctttgttgctcggtgcttattctttgtacctcggtttgcatc 12937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 172 - 295
Target Start/End: Complemental strand, 18632 - 18509
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||| ||||||||||| ||  |||||||||||||||||||  |||||||  || |||    
T  18632 tgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatctgaattaggtagaataatcaagaaattagcattattga 18533  T
Q  272 ttctccattcatattggtaattgt 295  Q
     |||||| ||||||||||||||||    
T  18532 ctctccactcatattggtaattgt 18509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 172 - 309
Target Start/End: Original strand, 38043 - 38177
Alignment:
Q  172 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 271  Q
    ||||||||||||||||| ||||||||||   | ||||| |||||||  | ||||||||| ||  |||||||||||||||||||  |||||||  || |||    
T  38043 tgtacctgtgggttagtgccaacataaa---agttttctaccaccttagaattagtaatatctgaattaggtagaataatcaagaaattagcattattga 38139  T
Q  272 ttctccattcatattggtaattgtgagtagggtcatgg 309  Q
     || ||| ||||||||| ||||||||| |||| |||||    
T  38140 ctcgccactcatattggaaattgtgagaagggccatgg 38177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1184 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1184
Description:

Target: scaffold1184; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 213
Target Start/End: Original strand, 537 - 571
Alignment:
Q  179 gtgggttagtaccaacataaagcaaattttccacc 213  Q
    |||||||||||||||||||||||||||||||||||    
T  537 gtgggttagtaccaacataaagcaaattttccacc 571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0473 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0473
Description:

Target: scaffold0473; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 12983 - 12929
Alignment:
Q  18 ttcaacaccttgtctttgttgctcggtgcatgttctttgaactttggtttgcatc 72  Q
    ||||||||||||||||||||||||||||| | | ||||| || | ||||||||||    
T  12983 ttcaacaccttgtctttgttgctcggtgcttatcctttgtacctcggtttgcatc 12929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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