View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5743-Insertion-2 (Length: 420)

Name: NF5743-Insertion-2
Description: NF5743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5743-Insertion-2
NF5743-Insertion-2
[»] chr7 (4 HSPs)
chr7 (33-420)||(5177092-5177480)
chr7 (33-143)||(8553024-8553134)
chr7 (157-236)||(8552904-8552983)
chr7 (346-408)||(8552723-8552785)
[»] chr8 (13 HSPs)
chr8 (39-327)||(1797340-1797625)
chr8 (33-145)||(6230120-6230232)
chr8 (157-403)||(5203860-5204115)
chr8 (33-143)||(5203682-5203792)
chr8 (33-144)||(5193444-5193555)
chr8 (161-411)||(6230302-6230558)
chr8 (157-409)||(5193610-5193862)
chr8 (344-411)||(5174907-5174974)
chr8 (356-401)||(1797287-1797332)
chr8 (90-143)||(5174590-5174643)
chr8 (342-402)||(5183491-5183551)
chr8 (343-409)||(5170705-5170771)
chr8 (211-260)||(5183348-5183397)
[»] chr4 (3 HSPs)
chr4 (90-143)||(49610658-49610711)
chr4 (157-252)||(49610752-49610847)
chr4 (354-402)||(10202876-10202924)
[»] chr6 (4 HSPs)
chr6 (36-146)||(16472248-16472357)
chr6 (350-408)||(1180938-1180996)
chr6 (81-142)||(1180636-1180697)
chr6 (348-408)||(1186313-1186373)


Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 33 - 420
Target Start/End: Original strand, 5177092 - 5177480
Alignment:
Q  33 ttaaatttttctcattaagagtattgtcattgaagcatgtcctttcgagagacgaaaatgcaattgaacatctcatttcttgttgtcctttgattgaaca 132  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5177092 ttaaatttttctcattaagagttttgtcattgaagcatgtcctttctagagacgaaaatgcaattgaacatctcatttcttgttgtcctttgattgaaca 5177191  T
Q  133 tataactttgaggtttatcgacaacatgaagtctttgagcattcatggtctgcttaagctcaagacatttaaagttgaaggaatccaagaggtatatata 232  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||     
T  5177192 tataactttgaggtttgtcgacaacatgaagtctttgagcattcatggtctacttaagctcaagacagttaaagttgaaggaatccaggaggtatatatt 5177291  T
Q  233 gatgccccgtatcttgagaaattgtgtttttgtcccgatgattttttcgcatcatataagattggtttccacagatgccgaaatttgaaatatttgtctc 332  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| | ||||||| ||||||||||||||||||||    
T  5177292 gatgccccgtatcttgagaaattgcgtttttgtcccgatgattttttcgcaccatataagattggtttcgatagatgccaaaatttgaaatatttgtctc 5177391  T
Q  333 tggagagttgtattatcacaaacaaatggtttcttgaactgtttccaaaatttcctttccttgagagtttggaattgga-agttgcact 420  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5177392 tggagagttgtattatcgcaaacaaatggtttcttgaactgtttccaaaatttcctttccttgagagtttggaattggacagttgcact 5177480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 33 - 143
Target Start/End: Complemental strand, 8553134 - 8553024
Alignment:
Q  33 ttaaatttttctcattaagagtattgtcattgaagcatgtcctttcgagagacgaaaatgcaattgaacatctcatttcttgttgtcctttgattgaaca 132  Q
    |||| ||||| ||||| |||||||||||||||  |  ||| |||| |  ||| ||| |||||||||| ||||||||||||||||||||||| ||||||||    
T  8553134 ttaagtttttttcattgagagtattgtcattgtggattgttcttttggaagatgaacatgcaattgagcatctcatttcttgttgtcctttcattgaaca 8553035  T
Q  133 tataactttga 143  Q
    |||||||||||    
T  8553034 tataactttga 8553024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 8552983 - 8552904
Alignment:
Q  157 catgaagtctttgagcattcatggtctgcttaagctcaagacatttaaagttgaaggaatccaagaggtatatatagatg 236  Q
    |||||||||||||||||| |||||||| |  |||||||||||| || | ||| | ||||| |||||||||||||||||||    
T  8552983 catgaagtctttgagcatgcatggtctaccaaagctcaagacagttgatgttcatggaatacaagaggtatatatagatg 8552904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 408
Target Start/End: Complemental strand, 8552785 - 8552723
Alignment:
Q  346 tatcacaaacaaatggtttcttgaactgtttccaaaatttcctttccttgagagtttggaatt 408  Q
    ||||||| ||||||||||||||||| ||||| | ||||| |||||||||||||| ||| ||||    
T  8552785 tatcacagacaaatggtttcttgaattgttttcgaaattccctttccttgagagattgaaatt 8552723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 39 - 327
Target Start/End: Complemental strand, 1797625 - 1797340
Alignment:
Q  39 ttttctcattaagagtattgtcattgaagcatgtcctttcgagagacgaaaatgcaattgaacatctcatttcttgttgtcctttgattgaacatataac 138  Q
    ||||||||||||||||| ||||||||  | ||||| |||||| ||||||| ||| |||||||||| | |||||||||||||| |||||||||||||||||    
T  1797625 ttttctcattaagagtactgtcattgtgggatgtcgtttcgaaagacgaacatgtaattgaacattttatttcttgttgtccgttgattgaacatataac 1797526  T
Q  139 tttgaggtttatcgacaacatgaagtctttgagcattcatggtctgcttaagctcaagacatttaaagttgaaggaatccaagaggtatatatagatgcc 238  Q
    ||||| |||| ||||||   |||||||||||||||| |||||||| ||||||||||||||| || | |||||||||||||| ||||||||||| ||||||    
T  1797525 tttgaagtttgtcgaca---tgaagtctttgagcatgcatggtctacttaagctcaagacagttgatgttgaaggaatccaggaggtatatattgatgcc 1797429  T
Q  239 ccgtatcttgagaaattgtgtttttgtcccgatgattttttcgcatcatataagattggtttccacagatgccgaaatttgaaatattt 327  Q
    ||||||||||||||| | |||| |||||| |||||||||||  || |||||||||||| |||  | ||||||| |||||||||||||||    
T  1797428 ccgtatcttgagaaactttgttattgtccggatgattttttttcaccatataagattgattttgatagatgccaaaatttgaaatattt 1797340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 6230120 - 6230232
Alignment:
Q  33 ttaaatttttctcattaagagtattgtcattgaagcatgtcctttcgagagacgaaaatgcaattgaacatctcatttcttgttgtcctttgattgaaca 132  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  6230120 ttaaatttttctcattaagaatattgtcattgaagcatgtcctttccagagacgaacatgcaattgaacatctcatttcttgttgtcctttaattgaaca 6230219  T
Q  133 tataactttgagg 145  Q
    |||||||||||||    
T  6230220 tataactttgagg 6230232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 157 - 403
Target Start/End: Original strand, 5203860 - 5204115
Alignment:
Q  157 catgaagtctttgagcattcatggtctgcttaagctcaagacatttaaagttgaaggaatccaagaggtatatatagatgccccgtatcttgagaaattg 256  Q
    ||||||||||||||  || |||||||| |||||| | |||||| || | ||| ||||||| || ||||| ||||| |||||||||| ||||||||||||     
T  5203860 catgaagtctttgaatatgcatggtctacttaagttgaagacagttgatgttcaaggaatacaggaggtttatattgatgccccgtgtcttgagaaattt 5203959  T
Q  257 tgtttttgtcccgatgattttttcgcatcatataagattggtttccacagatgccgaaatttgaaatattt---------gtctctggagagttgtatta 347  Q
    |||| |||||| | |||||||  |||| | | |||||||| |||  | || |||| |||||||||||||||         |||| || ||||| ||||||    
T  5203960 tgttattgtcctggtgattttgacgcaccgtttaagattgattttgataggtgccaaaatttgaaatatttagacttgttgtctttgaagagtagtatta 5204059  T
Q  348 tcacaaacaaatggtttcttgaactgtttccaaaatttcctttccttgagagtttg 403  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5204060 tcacagacaaatggtttcttgaactgttttcaaaatttcctttccttgagagtttg 5204115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 33 - 143
Target Start/End: Original strand, 5203682 - 5203792
Alignment:
Q  33 ttaaatttttctcattaagagtattgtcattgaagcatgtcctttcgagagacgaaaatgcaattgaacatctcatttcttgttgtcctttgattgaaca 132  Q
    ||||||||||||| |||| |||||||||||||  |  ||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||    
T  5203682 ttaaatttttctcgttaaaagtattgtcattgtgggctgtcctttcgagagatgaacatgcaattgagcatctcatttcttgttgtcctttgattgaaca 5203781  T
Q  133 tataactttga 143  Q
    |||||||||||    
T  5203782 tataactttga 5203792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 33 - 144
Target Start/End: Original strand, 5193444 - 5193555
Alignment:
Q  33 ttaaatttttctcattaagagtattgtcattgaagcatgtcctttcgagagacgaaaatgcaattgaacatctcatttcttgttgtcctttgattgaaca 132  Q
    |||||||||||||| |||||||||||||||||  |  |||||||  |||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  5193444 ttaaatttttctcactaagagtattgtcattgtggggtgtccttgtgagagacgaacatgcaatcgaacatctcatttcttgttgtcctttgattgaaca 5193543  T
Q  133 tataactttgag 144  Q
    ||||||| ||||    
T  5193544 tataactgtgag 5193555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 161 - 411
Target Start/End: Original strand, 6230302 - 6230558
Alignment:
Q  161 aagtctttgagcattcatggtctgcttaagctcaagacatttaaagttgaaggaatccaagaggtatatatagatgccccgtatcttgagaaattgtgtt 260  Q
    ||||||||||| ||  ||||||| |||||| | |||||  || | ||| ||||||| |||||||| ||||| ||| |||||| ||| ||||||||  |||    
T  6230302 aagtctttgagtatggatggtctacttaagttgaagacggttgatgttcaaggaatacaagaggtttatattgattccccgtctctcgagaaattacgtt 6230401  T
Q  261 tttgtcccgatgattttttcgcatcatataagattggtttccacagatgccgaaatttgaaatattt------gtctctggagagttgtattatcacaaa 354  Q
     |||||| | | |||||  |||| ||| |||||||| |||  | ||||||| |||||||||||||||      || |||||| ||| ||||||||||  |    
T  6230402 attgtcctggttattttgacgcaccatttaagattgattttgatagatgccaaaatttgaaatatttagacttgtgtctggacagtggtattatcaccga 6230501  T
Q  355 caaatggtttcttgaactgtttccaaaatttcctttccttgagagtttggaattgga 411  Q
    ||||||||||||||||||||||  |||||||| |||||||||||||||| |||||||    
T  6230502 caaatggtttcttgaactgtttagaaaatttcgtttccttgagagtttgaaattgga 6230558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 157 - 409
Target Start/End: Original strand, 5193610 - 5193862
Alignment:
Q  157 catgaagtctttgagcattcatggtctgcttaagctcaagacatttaaagttgaaggaatccaagaggtatatatagatgccccgtatcttgagaaattg 256  Q
    ||||||||||||||| ||   |||||| |||||| | |||||  || | |||  |||||| |||||| | || || || ||||||| ||||||||||||     
T  5193610 catgaagtctttgagtatggttggtctacttaagttgaagacggttgatgttcgaggaatacaagagatttacattgacgccccgtgtcttgagaaatta 5193709  T
Q  257 tgtttttgtcccgatgattttttcgcatcatataagattggtttccacagatgccgaaatttgaaatatttgtctctggagagttgtattatcacaaaca 356  Q
    | || |||||| | | |||||  || | ||| |||||||| |||  | || |||| ||||||||||||||||||||||  |||   |||||||||  |||    
T  5193710 ttttattgtcctggttattttgacgaaccatttaagattgattttgataggtgccaaaatttgaaatatttgtctctgatgagagatattatcactgaca 5193809  T
Q  357 aatggtttcttgaactgtttccaaaatttcctttccttgagagtttggaattg 409  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  5193810 aatggtttctcgaactgtttccaaaatttcctttccttgagagtttgaaattg 5193862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 344 - 411
Target Start/End: Original strand, 5174907 - 5174974
Alignment:
Q  344 attatcacaaacaaatggtttcttgaactgtttccaaaatttcctttccttgagagtttggaattgga 411  Q
    ||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  5174907 attatcaccgacaaatggtttcttgaactgtttcctaaatttcctttccttgagagtttgaaattgga 5174974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 356 - 401
Target Start/End: Complemental strand, 1797332 - 1797287
Alignment:
Q  356 aaatggtttcttgaactgtttccaaaatttcctttccttgagagtt 401  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||    
T  1797332 aaatggtttcttgaactgtttccaaaatttcatttcctagagagtt 1797287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 143
Target Start/End: Original strand, 5174590 - 5174643
Alignment:
Q  90 atgcaattgaacatctcatttcttgttgtcctttgattgaacatataactttga 143  Q
    ||||||||||  |||| |||||| ||||||||||||||||||||||||||||||    
T  5174590 atgcaattgagaatctgatttctcgttgtcctttgattgaacatataactttga 5174643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 402
Target Start/End: Original strand, 5183491 - 5183551
Alignment:
Q  342 gtattatcacaaacaaatggtttcttgaactgtttccaaaatttcctttccttgagagttt 402  Q
    ||||||||||  | ||||||||||||||||||||| || ||| ||||||||||||||||||    
T  5183491 gtattatcaccgataaatggtttcttgaactgttttcagaatatcctttccttgagagttt 5183551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 409
Target Start/End: Original strand, 5170705 - 5170771
Alignment:
Q  343 tattatcacaaacaaatggtttcttgaactgtttccaaaatttcctttccttgagagtttggaattg 409  Q
    |||||| ||| ||||||||||||| || || |||| |||||| |||||||||||||| ||| |||||    
T  5170705 tattattacagacaaatggtttctcgatctctttcgaaaattccctttccttgagaggttgaaattg 5170771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 5183348 - 5183397
Alignment:
Q  211 aggaatccaagaggtatatatagatgccccgtatcttgagaaattgtgtt 260  Q
    ||||||||| ||||| ||||| ||||||| ||||||||||||||| ||||    
T  5183348 aggaatccaggaggtttatattgatgcccagtatcttgagaaattttgtt 5183397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 90 - 143
Target Start/End: Original strand, 49610658 - 49610711
Alignment:
Q  90 atgcaattgaacatctcatttcttgttgtcctttgattgaacatataactttga 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49610658 atgcaattgaacatctcatttcttgttgtcctttgattgaacatataactttga 49610711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 157 - 252
Target Start/End: Original strand, 49610752 - 49610847
Alignment:
Q  157 catgaagtctttgagcattcatggtctgcttaagctcaagacatttaaagttgaaggaatccaagaggtatatatagatgccccgtatcttgagaa 252  Q
    |||||||| ||||||||| | |||||| |  |||||||||||| || | ||| ||||||| |||||||| ||| | |||||||| | |||||||||    
T  49610752 catgaagtgtttgagcatgcttggtctaccaaagctcaagacagttgatgttcaaggaatacaagaggtttatgtcgatgccccatgtcttgagaa 49610847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 402
Target Start/End: Original strand, 10202876 - 10202924
Alignment:
Q  354 acaaatggtttcttgaactgtttccaaaatttcctttccttgagagttt 402  Q
    |||| |||||||||||| ||||||| ||||| ||||| |||||||||||    
T  10202876 acaagtggtttcttgaattgtttccgaaattcccttttcttgagagttt 10202924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 36 - 146
Target Start/End: Original strand, 16472248 - 16472357
Alignment:
Q  36 aatttttctcattaagagtattgtcattgaagcatgtcctttcgagagacgaaaatgcaattgaacatctcatttcttgttgtcctttgattgaacatat 135  Q
    ||||||||||||| ||||||||||||||      |||||||||||||||| || |||||||||| ||  ||||||||  |||||||||||||||||||||    
T  16472248 aatttttctcattgagagtattgtcattatgttgtgtcctttcgagagac-aacatgcaattgagcaattcatttctcattgtcctttgattgaacatat 16472346  T
Q  136 aactttgaggt 146  Q
    |||||||||||    
T  16472347 aactttgaggt 16472357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 408
Target Start/End: Original strand, 1180938 - 1180996
Alignment:
Q  350 acaaacaaatggtttcttgaactgtttccaaaatttcctttccttgagagtttggaatt 408  Q
    |||||||| |||||||||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  1180938 acaaacaagtggtttcttgaattgtttccgaaattcccttttcttgagagtttgaaatt 1180996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 1180636 - 1180697
Alignment:
Q  81 gagacgaaaatgcaattgaacatctcatttcttgttgtcctttgattgaacatataactttg 142  Q
    |||| ||| |||||||| | || ||||| |||| |||||||||||||||| |||||||||||    
T  1180636 gagatgaacatgcaattaaccaactcatctctttttgtcctttgattgaatatataactttg 1180697  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 408
Target Start/End: Original strand, 1186313 - 1186373
Alignment:
Q  348 tcacaaacaaatggtttcttgaactgtttccaaaatttcctttccttgagagtttggaatt 408  Q
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T  1186313 tcaccaacaagtggtttcttgaattgtttccgaaattcccctttcttgagagtttgaaatt 1186373  T

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