View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5743_high_5 (Length: 381)

Name: NF5743_high_5
Description: NF5743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5743_high_5
NF5743_high_5
[»] chr8 (6 HSPs)
chr8 (6-287)||(22512355-22512636)
chr8 (90-270)||(2688803-2688984)
chr8 (209-283)||(26377776-26377850)
chr8 (218-282)||(22922162-22922226)
chr8 (148-255)||(23573220-23573334)
chr8 (255-287)||(24730821-24730853)
[»] chr4 (7 HSPs)
chr4 (134-283)||(22716287-22716440)
chr4 (134-283)||(22988777-22988930)
chr4 (90-259)||(10494553-10494726)
chr4 (207-261)||(9260315-9260369)
chr4 (113-162)||(6659756-6659805)
chr4 (194-270)||(7635027-7635103)
chr4 (218-265)||(13085423-13085470)
[»] chr3 (11 HSPs)
chr3 (90-270)||(8536655-8536839)
chr3 (140-287)||(365858-366008)
chr3 (218-287)||(3064046-3064115)
chr3 (9-74)||(35724428-35724493)
chr3 (13-74)||(35708529-35708590)
chr3 (246-287)||(43304265-43304306)
chr3 (207-287)||(2472964-2473044)
chr3 (13-74)||(35726234-35726295)
chr3 (113-159)||(43304322-43304368)
chr3 (255-287)||(43306979-43307011)
chr3 (255-287)||(53012778-53012810)
[»] chr5 (3 HSPs)
chr5 (112-283)||(18252071-18252246)
chr5 (172-282)||(21845202-21845316)
chr5 (218-259)||(19677630-19677671)
[»] chr2 (10 HSPs)
chr2 (90-270)||(280286-280469)
chr2 (198-287)||(27952632-27952721)
chr2 (93-255)||(32162254-32162419)
chr2 (149-287)||(31635975-31636117)
chr2 (168-282)||(35681913-35682031)
chr2 (218-282)||(2165637-2165701)
chr2 (134-259)||(33053094-33053222)
chr2 (218-287)||(22011145-22011214)
chr2 (141-283)||(36648555-36648701)
chr2 (209-282)||(23457389-23457461)
[»] chr1 (9 HSPs)
chr1 (90-287)||(13441896-13442095)
chr1 (90-287)||(40805488-40805689)
chr1 (90-287)||(31915167-31915370)
chr1 (194-282)||(10926933-10927022)
chr1 (113-195)||(8220155-8220236)
chr1 (207-264)||(8966030-8966087)
chr1 (148-282)||(10927792-10927929)
chr1 (134-282)||(23988898-23989050)
chr1 (254-287)||(50857751-50857784)
[»] scaffold0054 (3 HSPs)
scaffold0054 (99-270)||(48954-49127)
scaffold0054 (159-283)||(10349-10477)
scaffold0054 (141-266)||(37396-37524)
[»] chr7 (10 HSPs)
chr7 (91-287)||(1217467-1217665)
chr7 (194-287)||(4303146-4303239)
chr7 (141-287)||(13882990-13883141)
chr7 (132-283)||(11001085-11001240)
chr7 (134-270)||(1369488-1369629)
chr7 (136-283)||(8915432-8915582)
chr7 (207-281)||(1786426-1786500)
chr7 (90-154)||(11001256-11001320)
chr7 (255-287)||(4888960-4888992)
chr7 (255-287)||(29175573-29175605)
[»] chr6 (15 HSPs)
chr6 (149-283)||(22873500-22873638)
chr6 (159-283)||(22888953-22889081)
chr6 (159-283)||(22910496-22910624)
chr6 (115-255)||(34374074-34374218)
chr6 (133-270)||(18203109-18203249)
chr6 (151-282)||(12881715-12881849)
chr6 (218-282)||(3541960-3542024)
chr6 (218-282)||(30049630-30049694)
chr6 (218-282)||(30051917-30051981)
chr6 (240-287)||(11194401-11194448)
chr6 (140-259)||(12778692-12778813)
chr6 (204-271)||(32361106-32361173)
chr6 (90-166)||(8047760-8047836)
chr6 (218-261)||(8047661-8047704)
chr6 (207-256)||(18720020-18720069)
[»] scaffold0024 (2 HSPs)
scaffold0024 (90-179)||(144274-144363)
scaffold0024 (93-278)||(145364-145555)
[»] scaffold0110 (1 HSPs)
scaffold0110 (218-282)||(45928-45992)
[»] scaffold0240 (1 HSPs)
scaffold0240 (132-197)||(15676-15741)


Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 6 - 287
Target Start/End: Complemental strand, 22512636 - 22512355
Alignment:
Q  6 agttaataattgaagactatcctcttgtcaatgatgatcttcaaatatgggatgcaattaaacaatgggatcctggtaaatcaattcaatggcataaagg 105  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22512636 agttaataattgaagactatcctcttgtcaatgatggtcttcaaatatgggatgcaattaaacaatgggatcctggtaaatcaattcaatggcataaagg 22512537  T
Q  106 caattactatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaacatgggaagctt 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  22512536 caattactatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggtcttatgttcgttggatgagtcaacatgggaagctt 22512437  T
Q  206 cttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagtag 287  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22512436 cttatcagaataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagtag 22512355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 270
Target Start/End: Original strand, 2688803 - 2688984
Alignment:
Q  90 ttcaatggcataaaggcaattactatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgag 189  Q
    |||||||| |||||||||| ||||||||||| | ||| ||  ||||||| |||||||| |||||||||||| ||||| | |||| ||||| ||||| |||    
T  2688803 ttcaatgggataaaggcaactactatatttt-cgaactaaaccatcttttcatttcacccaatgggatccatgagggtgatctcatgttcattggaggag 2688901  T
Q  190 tcaa----catgggaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttt 270  Q
    ||||    |||||||| ||   ||| | ||| |||||||| | |||||||||| | |||||||||||||| ||| ||||| ||||    
T  2688902 tcaacatgcatgggaaact--ctattagaatgagaactcgtgatcgagttcttcataggtggaggagactcatgtaggagggttt 2688984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 283
Target Start/End: Original strand, 26377776 - 26377850
Alignment:
Q  209 atcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaattta 283  Q
    |||| ||| |||||| |||||||||||||| | |||||||||||||||||| ||||| ||||| |||||||||||    
T  26377776 atcagaatgagaacttggggtcgagttcttcaaaggtggaggagactgatgtaggagggttttcttagtaattta 26377850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 218 - 282
Target Start/End: Complemental strand, 22922226 - 22922162
Alignment:
Q  218 agaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaattt 282  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||| | ||  ||||||||||    
T  22922226 agaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaattt 22922162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 255
Target Start/End: Original strand, 23573220 - 23573334
Alignment:
Q  148 tcaatgggatccaggagggcggt---ctcttgttcgttggatgagtcaacatg----ggaagcttcttatcataataagaactcggggtcgagttcttta 240  Q
    ||||||||| ||||||||| |||   || |||||| ||||| |||||||||||    |||||||  |||||| ||| | ||||| ||||||||||||| |    
T  23573220 tcaatgggaaccaggagggtggtggtcttttgttcattggaggagtcaacatgcatgggaagctctttatcaaaatgaaaactccgggtcgagttcttca 23573319  T
Q  241 gaggtggaggagact 255  Q
    |||||||||||||||    
T  23573320 gaggtggaggagact 23573334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 287
Target Start/End: Original strand, 24730821 - 24730853
Alignment:
Q  255 tgatgcaggagagttttattagtaatttagtag 287  Q
    ||||||||||| |||||||||||||||||||||    
T  24730821 tgatgcaggagggttttattagtaatttagtag 24730853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 8e-43; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 134 - 283
Target Start/End: Original strand, 22716287 - 22716440
Alignment:
Q  134 tctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaacatg----ggaagcttcttatcataataagaactcggggt 229  Q
    |||||||||||||||||||| ||| |||||||| |||||||||||| ||||| |||||||||||    |||||||  |||||| ||| ||||||||||||    
T  22716287 tctttgcatttcactcaatgtgattcaggagggtggtctcttgttcattggaggagtcaacatgaatgggaagctctttatcaaaatgagaactcggggt 22716386  T
Q  230 cgagttctttagaggtggaggagactgatgcaggagagttttattagtaattta 283  Q
    |||||||||||||| ||||||||||||||||||  |||||||||||||||||||    
T  22716387 cgagttctttagagctggaggagactgatgcagttgagttttattagtaattta 22716440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 134 - 283
Target Start/End: Complemental strand, 22988930 - 22988777
Alignment:
Q  134 tctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaacatg----ggaagcttcttatcataataagaactcggggt 229  Q
    |||||||||||||||||||| ||| |||||||| |||||||||||| ||||| |||||||||||    |||||||  |||||| ||| ||||||||||||    
T  22988930 tctttgcatttcactcaatgtgattcaggagggtggtctcttgttcattggaggagtcaacatgaatgggaagctctttatcaaaatgagaactcggggt 22988831  T
Q  230 cgagttctttagaggtggaggagactgatgcaggagagttttattagtaattta 283  Q
    |||||||||||||| ||||||||||||||||||  |||||||||||||||||||    
T  22988830 cgagttctttagagctggaggagactgatgcagttgagttttattagtaattta 22988777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 259
Target Start/End: Original strand, 10494553 - 10494726
Alignment:
Q  90 ttcaatggcataaaggcaattactatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgag 189  Q
    |||||||| |||| ||||| | |||||||||| |||||||   |||||||||||||||||| ||| || ||  |||| |||||||||||| ||||| |||    
T  10494553 ttcaatgggataagggcaactgctatattttttaaaccaaactatctttgcatttcactcagtggaattcaaaagggtggtctcttgttcattggaggag 10494652  T
Q  190 tcaa----catgggaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagactgatg 259  Q
    || |    |||||||||||  ||||||  || |||||| | |||||||||||| ||| || ||| |||||||||    
T  10494653 tcgacatgcatgggaagctatttatcaggatcagaacttgaggtcgagttcttcagaagtagagaagactgatg 10494726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 207 - 261
Target Start/End: Original strand, 9260315 - 9260369
Alignment:
Q  207 ttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgca 261  Q
    |||||| ||||||||||||||||||||||||||||| || ||||||| |||||||    
T  9260315 ttatcaaaataagaactcggggtcgagttctttagacgtagaggagattgatgca 9260369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 6659805 - 6659756
Alignment:
Q  113 tatatttttcaaaccaagtcatctttgcatttcactcaatgggatccagg 162  Q
    |||||||||||||||||   ||||| ||||||||||||||||||||||||    
T  6659805 tatatttttcaaaccaaacaatcttggcatttcactcaatgggatccagg 6659756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 7635027 - 7635103
Alignment:
Q  194 catgggaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttt 270  Q
    |||||| ||||| |||| | ||| |||| | |||||||||||||| |||| |||||||||||||||  |||||||||    
T  7635027 catggggagctttttattagaatgagaatttggggtcgagttcttcagagatggaggagactgatgtgggagagttt 7635103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 218 - 265
Target Start/End: Complemental strand, 13085470 - 13085423
Alignment:
Q  218 agaactcggggtcgagttctttagaggtggaggagactgatgcaggag 265  Q
    ||||||||||||||||||||| |||| |||| |||||||||| |||||    
T  13085470 agaactcggggtcgagttcttcagagatggaagagactgatgtaggag 13085423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 8e-40; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 90 - 270
Target Start/End: Complemental strand, 8536839 - 8536655
Alignment:
Q  90 ttcaatggcataaaggcaattactatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgag 189  Q
    ||||||||||||||||||| | ||||| |||| |||| ||  ||||||||||||| ||||||||||||||||||||| | |||||||||| ||||| |||    
T  8536839 ttcaatggcataaaggcaactgctatagtttttaaacgaaaccatctttgcattttactcaatgggatccaggagggtgatctcttgttcattggaagag 8536740  T
Q  190 tcaac----atgggaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttt 270  Q
    |||||    ||| ||| ||| |||||| ||||||||||||| ||||||||||||||||||||| ||| |||||| ||||| ||||    
T  8536739 tcaacatatatgagaaactttttatcagaataagaactcggagtcgagttctttagaggtggaagaggctgatgtaggagggttt 8536655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 140 - 287
Target Start/End: Complemental strand, 366008 - 365858
Alignment:
Q  140 catttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaacatg---ggaagcttcttatcataataagaactcggggtcgagttc 236  Q
    |||||||||||||||||||| |||||| |||||| ||||| ||||| ||||||||||    |||||||  |||||| ||  |||||||| ||||||||||    
T  366008 catttcactcaatgggatcccggagggtggtctcctgttcattggaagagtcaacatacatggaagctctttatcaaaacgagaactcgaggtcgagttc 365909  T
Q  237 tttagaggtggaggagactgatgcaggagagttttattagtaatttagtag 287  Q
    || |||||||||||||| |||||||||||  ||||||||||||||||||||    
T  365908 ttcagaggtggaggagattgatgcaggaggattttattagtaatttagtag 365858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 218 - 287
Target Start/End: Complemental strand, 3064115 - 3064046
Alignment:
Q  218 agaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagtag 287  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||    
T  3064115 agaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttgttagtaatttagtag 3064046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 35724428 - 35724493
Alignment:
Q  9 taataattgaagactatcctcttgtcaatgatgatcttcaaatatgggatgcaattaaacaatggg 74  Q
    |||||||||||||||| ||| ||| |||||||| ||||| ||||||||||||||||||||||||||    
T  35724428 taataattgaagactacccttttgccaatgatggtcttctaatatgggatgcaattaaacaatggg 35724493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 35708529 - 35708590
Alignment:
Q  13 aattgaagactatcctcttgtcaatgatgatcttcaaatatgggatgcaattaaacaatggg 74  Q
    |||||||||||| ||| ||| |||||||| ||||| ||||||||||||||| ||||||||||    
T  35708529 aattgaagactacccttttgccaatgatggtcttctaatatgggatgcaatcaaacaatggg 35708590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 43304306 - 43304265
Alignment:
Q  246 ggaggagactgatgcaggagagttttattagtaatttagtag 287  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  43304306 ggaggagactgatgcaggagggttttattagtaatttagtag 43304265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 207 - 287
Target Start/End: Complemental strand, 2473044 - 2472964
Alignment:
Q  207 ttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagtag 287  Q
    |||||| ||| ||||||||||||||||||||||| | ||||||||  ||||| ||  |  |||||||||||||||||||||    
T  2473044 ttatcagaatgagaactcggggtcgagttctttaaaagtggaggaagctgatacacaaaggttttattagtaatttagtag 2472964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 35726295 - 35726234
Alignment:
Q  13 aattgaagactatcctcttgtcaatgatgatcttcaaatatgggatgcaattaaacaatggg 74  Q
    |||||||||||| ||| ||| |||||||| |||||  |||||||||||||| ||||||||||    
T  35726295 aattgaagactacccttttgccaatgatggtcttctcatatgggatgcaatcaaacaatggg 35726234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 43304368 - 43304322
Alignment:
Q  113 tatatttttcaaaccaagtcatctttgcatttcactcaatgggatcc 159  Q
    |||||||||||||||||   ||||| |||||||||||||||||||||    
T  43304368 tatatttttcaaaccaaacaatcttggcatttcactcaatgggatcc 43304322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 43307011 - 43306979
Alignment:
Q  255 tgatgcaggagagttttattagtaatttagtag 287  Q
    ||||||||||| |||||||||||||||||||||    
T  43307011 tgatgcaggagggttttattagtaatttagtag 43306979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 287
Target Start/End: Original strand, 53012778 - 53012810
Alignment:
Q  255 tgatgcaggagagttttattagtaatttagtag 287  Q
    ||||||||||| |||||||||||||||||||||    
T  53012778 tgatgcaggagggttttattagtaatttagtag 53012810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 112 - 283
Target Start/End: Original strand, 18252071 - 18252246
Alignment:
Q  112 ctatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaacatg----ggaagcttct 207  Q
    ||||||||||||||||||  ||||||||||||||||| |||||||| |||||||| |||||||||| | ||||| ||||| |||||    | |||||  |    
T  18252071 ctatatttttcaaaccaaaccatctttgcatttcactaaatgggattcaggagggtggtctcttgtccattggaggagtccacatgcatggaaagctgtt 18252170  T
Q  208 tatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaattta 283  Q
    ||||||||| ||||||||||||| ||||||| |||||| |||||| |||||||||||| ||||  |||||| ||||    
T  18252171 tatcataatgagaactcggggtcaagttcttcagaggtagaggaggctgatgcaggagggtttccttagtatttta 18252246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 172 - 282
Target Start/End: Complemental strand, 21845316 - 21845202
Alignment:
Q  172 tcttgttcgttggatgagtcaacatg----ggaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagag 267  Q
    |||||||| ||||| |||||||||||    |||||||  |||||| ||| ||||||||||||||||||||| |||||||||  ||||||||||| ||| |    
T  21845316 tcttgttcattggaggagtcaacatgcatgggaagctctttatcagaatgagaactcggggtcgagttcttcagaggtggaacagactgatgcaagaggg 21845217  T
Q  268 ttttattagtaattt 282  Q
    |||| ||||||||||    
T  21845216 ttttcttagtaattt 21845202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 19677671 - 19677630
Alignment:
Q  218 agaactcggggtcgagttctttagaggtggaggagactgatg 259  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  19677671 agaactcggggtcgagttcttcagaggtggaggagactgatg 19677630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 90 - 270
Target Start/End: Complemental strand, 280469 - 280286
Alignment:
Q  90 ttcaatggcataaaggcaattactatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgag 189  Q
    |||||||||||||| |||| | ||||||||| |||| |||  ||||| |||||||||||||||||||||||| |||  ||||||| |||| ||||| ||     
T  280469 ttcaatggcataaaagcaactgctatattttccaaatcaaaccatctatgcatttcactcaatgggatccagaaggatggtctct-gttcattggaggat 280371  T
Q  190 tcaacatgg----gaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttt 270  Q
    ||||||||     ||||||  |||||| ||| ||||||||||||||||||||| |||||||||||||||||||| || |||||||    
T  280370 tcaacatgcatgtgaagctctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtagaagagttt 280286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 198 - 287
Target Start/End: Complemental strand, 27952721 - 27952632
Alignment:
Q  198 ggaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagtag 287  Q
    |||||||  |||||| ||| ||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||    
T  27952721 ggaagctctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggttttattaataatttagtag 27952632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 93 - 255
Target Start/End: Complemental strand, 32162419 - 32162254
Alignment:
Q  93 aatggcataaaggcaattactatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtca 192  Q
    |||||||||||||||| ||||||||||| |||| |||  ||||||  ||||||||||||||||||| ||||||| |||||||||||| || || ||||||    
T  32162419 aatggcataaaggcaactactatattttccaaagcaaaccatcttctcatttcactcaatgggatcaaggagggtggtctcttgttcattaga-gagtca 32162321  T
Q  193 a----catgggaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagact 255  Q
    |    |||||||||||  |||||| ||| |||||||  ||| ||||| || |||| |||||||||||    
T  32162320 acatgcatgggaagctctttatcagaatgagaactcaaggttgagtttttcagagatggaggagact 32162254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 149 - 287
Target Start/End: Original strand, 31635975 - 31636117
Alignment:
Q  149 caatgggatccaggagggcggtctcttgttcgttggatgagtcaacatg----ggaagcttcttatcataataagaactcggggtcgagttctttagagg 244  Q
    ||||||||||| || ||| |  ||||||||| ||||| |||||||||||    |||| ||  |||||  ||| |||||||||  |||||||||| |||||    
T  31635975 caatgggatccgggtgggtgtgctcttgttcattggaggagtcaacatgcatgggaaactctttatctaaatgagaactcggattcgagttcttcagagg 31636074  T
Q  245 tggaggagactgatgcaggagagttttattagtaatttagtag 287  Q
    ||||||||||||||| ||||| |||||||||||||||||||||    
T  31636075 tggaggagactgatgtaggagggttttattagtaatttagtag 31636117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 168 - 282
Target Start/End: Original strand, 35681913 - 35682031
Alignment:
Q  168 ggtctcttgttcgttggatgagtcaacatg----ggaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcagg 263  Q
    |||||||||||| ||| | |||||||||||    | |||||  |||||| ||  |||||| |||||||||||||| ||||||||||||||||||||||||    
T  35681913 ggtctcttgttcattgaaggagtcaacatgcatagaaagctctttatcagaaagagaacttggggtcgagttcttcagaggtggaggagactgatgcagg 35682012  T
Q  264 agagttttattagtaattt 282  Q
    || ||||| ||||||||||    
T  35682013 agggttttcttagtaattt 35682031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 218 - 282
Target Start/End: Original strand, 2165637 - 2165701
Alignment:
Q  218 agaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaattt 282  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||  ||||||||||    
T  2165637 agaactcggggtcgagttcttcagaggtggaggagactgatgtaggagagtttccttagtaattt 2165701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 134 - 259
Target Start/End: Original strand, 33053094 - 33053222
Alignment:
Q  134 tctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaacatgg----gaagcttcttatcataataagaactcggggt 229  Q
    |||||||||| ||||||||||||| |||||||| |||||||||||  || || ||||| |||||     ||||||  |||| | ||||||||| ||||||    
T  33053094 tctttgcattccactcaatgggattcaggagggtggtctcttgtttattagaggagtcgacatgaatgagaagctctttattagaataagaac-cggggt 33053192  T
Q  230 cgagttctttagaggtggaggagactgatg 259  Q
    ||||||||| ||||||||||||||||||||    
T  33053193 cgagttcttcagaggtggaggagactgatg 33053222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 218 - 287
Target Start/End: Original strand, 22011145 - 22011214
Alignment:
Q  218 agaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagtag 287  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||   |||||||||||    
T  22011145 agaactcagggtcgagttctttagaggtggaggagagtgatgcaggagggttttatctttaatttagtag 22011214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 283
Target Start/End: Original strand, 36648555 - 36648701
Alignment:
Q  141 atttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaacatg---ggaagct-tcttatcataataagaactcggggtcgagttc 236  Q
    |||||| ||||| ||||| | ||||| |||||||| ||| ||||| |||||| ||||   ||||||  | |||||| || ||||||| || |||||||||    
T  36648555 atttcaatcaataggatctaagagggtggtctcttattcattggaagagtcatcatgcatggaagcacttttatcagaacaagaactgggagtcgagttc 36648654  T
Q  237 tttagaggtggaggagactgatgcaggagagttttattagtaattta 283  Q
    || | || ||||||||||| ||| ||||| ||||  |||||||||||    
T  36648655 ttcatagatggaggagactcatgtaggagggtttccttagtaattta 36648701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 282
Target Start/End: Original strand, 23457389 - 23457461
Alignment:
Q  209 atcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaattt 282  Q
    |||| ||| ||||||||||   |||||||| ||||||||||| |||||||| ||||| ||||| ||||||||||    
T  23457389 atcagaatgagaactcgggtcagagttcttcagaggtggaggcgactgatgtaggag-gttttcttagtaattt 23457461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 90 - 287
Target Start/End: Complemental strand, 13442095 - 13441896
Alignment:
Q  90 ttcaatggcataaaggcaattactatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgag 189  Q
    |||||||| ||||||| || |  | |||||||||||||||   |||||||||||||||||||||||||||||||||  | ||||||| || ||||| |||    
T  13442095 ttcaatggtataaaggaaactgttttatttttcaaaccaaactatctttgcatttcactcaatgggatccaggaggatgatctcttgctcattggaggag 13441996  T
Q  190 tcaacatg----ggaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagt 285  Q
    ||||||||    |||||||  |||||| ||| |||||| |   |||| ||||| ||||||||||||||||||||||| || ||||| |||||||||||||    
T  13441995 tcaacatgcatgggaagctctttatcagaatgagaacttga--tcgaattcttcagaggtggaggagactgatgcagaagggttttgttagtaatttagt 13441898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 90 - 287
Target Start/End: Original strand, 40805488 - 40805689
Alignment:
Q  90 ttcaatggcataaaggcaattactatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgag 189  Q
    |||||||| |||||| ||| | ||||||| | |||| ||| |||||||||||||||| |||||| ||| |||||||| | || ||||||| | ||| |||    
T  40805488 ttcaatgggataaagacaactgctatattctccaaatcaaatcatctttgcatttcattcaatgagattcaggagggtgatcccttgttcatcggaggag 40805587  T
Q  190 tcaacatgg----gaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagt 285  Q
    ||| ||||     ||| || ||||||| || |||||||||||||||| ||||||| |||||||||||||||||| |||| |||||  ||| |||||| ||    
T  40805588 tcatcatgcatgtgaaactccttatcagaacaagaactcggggtcgacttctttaaaggtggaggagactgatgtaggatagtttccttattaattttgt 40805687  T
Q  286 ag 287  Q
    ||    
T  40805688 ag 40805689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 90 - 287
Target Start/End: Original strand, 31915167 - 31915370
Alignment:
Q  90 ttcaatggcataaaggcaattactatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgag 189  Q
    |||||||| ||||||||||   | ||||||| ||||||||  |||||||  |||||||||||| ||||||||||||  | |||||||||| ||||| |||    
T  31915167 ttcaatgggataaaggcaacatcaatattttacaaaccaaaccatctttagatttcactcaatcggatccaggaggtag-tctcttgttcattggaggag 31915265  T
Q  190 tcaaca-tg---ggaagcttcttatcataataagaactcggggtcgagttctttagaggtggag---gagactgatgcaggagagttttattagtaattt 282  Q
    |||||| ||   ||||   |||||| | ||  |||||||||||| |||||||| ||||||||||   |||||||||||| ||| ||||||||||||||||    
T  31915266 tcaacaatgaatggaaaactcttattagaacgagaactcggggttgagttcttcagaggtggaggaggagactgatgcatgagggttttattagtaattt 31915365  T
Q  283 agtag 287  Q
    |||||    
T  31915366 agtag 31915370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 10926933 - 10927022
Alignment:
Q  194 catgggaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcagga-gagttttattagtaattt 282  Q
    ||||||||| |  |||||| ||| ||||||||||||||||||||| |||||||||||||||||||| |||| || ||| |||||||||||    
T  10926933 catgggaagttctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggatgattttcattagtaattt 10927022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 195
Target Start/End: Original strand, 8220155 - 8220236
Alignment:
Q  113 tatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaaca 195  Q
    |||||| ||||||||| | ||||| |||||||||||||||||||||||||||||  |||||||||||  |||| |||||||||    
T  8220155 tatattattcaaacca-gccatctatgcatttcactcaatgggatccaggagggtcgtctcttgttcactggaggagtcaaca 8220236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 264
Target Start/End: Complemental strand, 8966087 - 8966030
Alignment:
Q  207 ttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcagga 264  Q
    |||||| ||| ||||||| ||||||||||||| |||||||||||||||||||| ||||    
T  8966087 ttatcagaatgagaactcagggtcgagttcttcagaggtggaggagactgatgtagga 8966030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 282
Target Start/End: Original strand, 10927792 - 10927929
Alignment:
Q  148 tcaatgggatccaggagggcggtctcttgttcgttggatgagtcaac----atgggaagcttcttatcataataagaactcggggtcgagttctttagag 243  Q
    ||||||||||| ||||||| |||||||||||  ||| | ||||||||    ||| ||| ||  |||| | ||| ||||||||||||||||||||| |||     
T  10927792 tcaatgggatctaggaggg-ggtctcttgtttattgtaagagtcaacttgcatgagaaactctttattagaatgagaactcggggtcgagttcttcagaa 10927890  T
Q  244 gtggaggagactgatgcaggagagttttattagtaattt 282  Q
    ||||||||||||| || ||||| ||||  ||||||||||    
T  10927891 gtggaggagactgttgtaggagggtttccttagtaattt 10927929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 282
Target Start/End: Original strand, 23988898 - 23989050
Alignment:
Q  134 tctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaacatg----ggaagcttcttatcataataagaactcggggt 229  Q
    ||||| ||||| |||||||||||||||| |||| | ||||||| || ||| | |||| ||||||    |||||||  ||| || ||  |||||||  |||    
T  23988898 tctttacatttaactcaatgggatccagaagggtgatctcttgctcattgaaggagttaacatgcaagggaagctctttaccaaaacgagaactcaaggt 23988997  T
Q  230 cgagttctttagaggtggaggagactgatgcaggagagttttattagtaattt 282  Q
    ||||||||| ||||||| |||||||| ||| ||||| ||||  ||||||||||    
T  23988998 cgagttcttcagaggtgtaggagactaatgtaggagggtttccttagtaattt 23989050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 287
Target Start/End: Complemental strand, 50857784 - 50857751
Alignment:
Q  254 ctgatgcaggagagttttattagtaatttagtag 287  Q
    |||||||||||| |||||||||||||||||||||    
T  50857784 ctgatgcaggagggttttattagtaatttagtag 50857751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 99 - 270
Target Start/End: Original strand, 48954 - 49127
Alignment:
Q  99 ataaaggcaattactatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaacatg- 197  Q
    |||||||||| | ||||||||||||||||||  | |  ||| ||||||||||||||||||| || ||| | |||| ||||| | ||| |||||||||||     
T  48954 ataaaggcaactgctatatttttcaaaccaaacctt--ttgtatttcactcaatgggatccgggtgggtgttctcgtgttcataggaagagtcaacatgc 49051  T
Q  198 --ggaagct-tcttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttt 270  Q
      ||||| | | |||||| |||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||    
T  49052 atggaagttcttttatcagaataagaactcggggttgagttcttcagaggtggaggagactgatgtaggagagttt 49127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 159 - 283
Target Start/End: Original strand, 10349 - 10477
Alignment:
Q  159 caggagggcggtctcttgttcgttggatgagtcaa----catgggaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagac 254  Q
    ||||||||  ||||||||||| ||||| |||||||    |||||||||||  |||||||||| |||||| |||||| | ||| ||||||||||| |||||    
T  10349 caggagggttgtctcttgttcattggaggagtcaatattcatgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagac 10448  T
Q  255 tgatgcaggagagttttattagtaattta 283  Q
    ||||| ||||| ||||| |||||||||||    
T  10449 tgatgtaggagggttttcttagtaattta 10477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 266
Target Start/End: Original strand, 37396 - 37524
Alignment:
Q  141 atttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaacatg---ggaagct-tcttatcataataagaactcggggtcgagttc 236  Q
    |||| |||||||||||||| |  ||||| ||||  |||| | ||| |||||||||||   ||||||| | |||||| |||||||| | ||| ||||||||    
T  37396 attttactcaatgggatccggttgggcgttctccggttcataggaagagtcaacatgcatggaagctcttttatcagaataagaatttggg-tcgagttc 37494  T
Q  237 tttagaggtggaggagactgatgcaggaga 266  Q
    || |||||||||||||||||||| ||||||    
T  37495 ttcagaggtggaggagactgatgtaggaga 37524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 91 - 287
Target Start/End: Complemental strand, 1217665 - 1217467
Alignment:
Q  91 tcaatggcataaaggcaattactatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgagt 190  Q
    ||||||| |||||||||| | |||||||||||||||||    |||||| ||||||| || |||||||||||||||| |||||||||||  ||||| ||      
T  1217665 tcaatgggataaaggcaactgctatatttttcaaaccagactatctttacatttcattctatgggatccaggagggtggtctcttgttaattggaggaca 1217566  T
Q  191 caacatg---ggaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagtag 287  Q
    | |||||   | || ||  |||||| ||   ||||||||| |||||||||| | |||||||||||||||||||||||| ||||||||||||||| |||||    
T  1217565 cgacatgcatgaaatctctttatcaaaacgtgaactcggg-tcgagttcttcaaaggtggaggagactgatgcaggagggttttattagtaattcagtag 1217467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 194 - 287
Target Start/End: Original strand, 4303146 - 4303239
Alignment:
Q  194 catgggaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagtag 287  Q
    |||||||||||  |||||| ||| |||||||||| |||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||    
T  4303146 catgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagggttttattagtaatttagtag 4303239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 141 - 287
Target Start/End: Complemental strand, 13883141 - 13882990
Alignment:
Q  141 atttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaacat------gggaagcttcttatcataataagaactcggggtcgagt 234  Q
    |||||| ||||||||||||||||||| |||||||||||  ||||| ||| ||||||      | ||| ||  |||| | ||| |||||||||| ||||||    
T  13883141 atttcattcaatgggatccaggagggtggtctcttgtttattggaggagccaacatatgcatgagaatctctttattagaatgagaactcggg-tcgagt 13883043  T
Q  235 tctttagaggtggaggagactgatgcaggagagttttattagtaatttagtag 287  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  13883042 tctttagaggtggacgagactgatgcaggagggttttattagtaatttagtag 13882990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 132 - 283
Target Start/End: Complemental strand, 11001240 - 11001085
Alignment:
Q  132 catctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaacatg----ggaagcttcttatcataataagaactcggg 227  Q
    ||||||| ||||||||||||||||||||||||||  | |||||| ||| ||||| |||| ||||||    |||||||  |||||| ||| |||| | |||    
T  11001240 catctttacatttcactcaatgggatccaggaggatgatctctttttcattggaggagttaacatgcatgggaagctctttatcacaatgagaatttggg 11001141  T
Q  228 gtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaattta 283  Q
    ||||||||||| |||||||||||||||||||| ||||| ||||  |||||| ||||    
T  11001140 gtcgagttcttcagaggtggaggagactgatgtaggagggtttccttagtatttta 11001085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 134 - 270
Target Start/End: Original strand, 1369488 - 1369629
Alignment:
Q  134 tctttgcatttcactcaatgggatccaggagggcggtctctt-gttcgttggatgagtcaacat----gggaagcttcttatcataataagaactcgggg 228  Q
    |||||| |||||| |||||||||||  |||||| |||| ||| |||| ||||| ||||||||||    ||||||||  |||||| ||||||||||||||     
T  1369488 tctttgaatttcattcaatgggatcgtggagggtggtcgctttgttcattggaggagtcaacattcatgggaagctctttatcagaataagaactcgggc 1369587  T
Q  229 tcgagttctttagaggtggaggagactgatgcaggagagttt 270  Q
    |||||||||| |||||||||||||||| |||||  |||||||    
T  1369588 tcgagttcttcagaggtggaggagactcatgcacaagagttt 1369629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 283
Target Start/End: Complemental strand, 8915582 - 8915432
Alignment:
Q  136 tttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaacatg---ggaagcttcttatcataataagaactcggggtcga 232  Q
    |||||||||||| |||||| ||| || |||  |||||||||||| | ||| |||||||||||   || ||||| |||| | ||| |||| |||||||| |    
T  8915582 tttgcatttcacccaatggcatctagaaggttggtctcttgttcatcggaggagtcaacatgcatgggagctttttattagaatgagaattcggggtcta 8915483  T
Q  233 gttctttagaggtggaggagactgatgcaggagagttttattagtaattta 283  Q
    |||||| |||| ||||||||||||||| ||||| ||||  |||||| ||||    
T  8915482 gttcttcagagatggaggagactgatgtaggagggtttccttagtatttta 8915432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 207 - 281
Target Start/End: Original strand, 1786426 - 1786500
Alignment:
Q  207 ttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaatt 281  Q
    |||||| ||| |||||||| |||||||||||| |||||||||||||||| ||| ||||  ||||| |||||||||    
T  1786426 ttatcaaaatgagaactcgaggtcgagttcttcagaggtggaggagactcatgtaggaaggttttcttagtaatt 1786500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 11001320 - 11001256
Alignment:
Q  90 ttcaatggcataaaggcaattactatatttttcaaaccaagtcatctttgcatttcactcaatgg 154  Q
    ||||||||||||||||||| |  |||||||| |||| |||  ||||||| |||||||||||||||    
T  11001320 ttcaatggcataaaggcaactgttatattttccaaaacaaaccatctttacatttcactcaatgg 11001256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 4888992 - 4888960
Alignment:
Q  255 tgatgcaggagagttttattagtaatttagtag 287  Q
    |||||||||||| ||||||||||||||||||||    
T  4888992 tgatgcaggagaattttattagtaatttagtag 4888960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 287
Target Start/End: Original strand, 29175573 - 29175605
Alignment:
Q  255 tgatgcaggagagttttattagtaatttagtag 287  Q
    ||||||||||| |||||||||||||||||||||    
T  29175573 tgatgcaggagggttttattagtaatttagtag 29175605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 149 - 283
Target Start/End: Original strand, 22873500 - 22873638
Alignment:
Q  149 caatgggatccaggagggcggtctcttgttcgttggatgagtcaa----catgggaagcttcttatcataataagaactcggggtcgagttctttagagg 244  Q
    ||||||||||||||||||  ||||||||||| ||||| |||||||    |||||||||||  |||||||||| |||||| ||| |||| ||| |||||||    
T  22873500 caatgggatccaggagggttgtctcttgttcattggaggagtcaatatgcatgggaagctctttatcataatgagaacttgggatcgatttccttagagg 22873599  T
Q  245 tggaggagactgatgcaggagagttttattagtaattta 283  Q
    |||| |||||||||| ||||| ||||| ||| |||||||    
T  22873600 tggatgagactgatgtaggagggttttcttaataattta 22873638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 159 - 283
Target Start/End: Original strand, 22888953 - 22889081
Alignment:
Q  159 caggagggcggtctcttgttcgttggatgagtcaa----catgggaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagac 254  Q
    ||||||||  ||||||||||| ||||| |||||||    |||||||||||  |||||||||| |||||| |||||| | ||| ||||||||||| |||||    
T  22888953 caggagggttgtctcttgttcattggaggagtcaatatgcatgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagac 22889052  T
Q  255 tgatgcaggagagttttattagtaattta 283  Q
    ||||| ||||| ||||| |||||||||||    
T  22889053 tgatgtaggagggttttcttagtaattta 22889081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 159 - 283
Target Start/End: Original strand, 22910496 - 22910624
Alignment:
Q  159 caggagggcggtctcttgttcgttggatgagtcaa----catgggaagcttcttatcataataagaactcggggtcgagttctttagaggtggaggagac 254  Q
    ||||||||  ||||||||||| ||||| |||||||    |||||||||||  |||||||||| |||||| |||||| | ||| ||||||||||| |||||    
T  22910496 caggagggttgtctcttgttcattggaggagtcaatatacatgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagac 22910595  T
Q  255 tgatgcaggagagttttattagtaattta 283  Q
    ||||| ||||| ||||| |||||||||||    
T  22910596 tgatgtaggagggttttcttagtaattta 22910624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 115 - 255
Target Start/End: Complemental strand, 34374218 - 34374074
Alignment:
Q  115 tatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaacatg----ggaagcttcttat 210  Q
    ||||||||||| |||  |||||  ||| |||||||||||||||||| ||| | |||||||||||| ||||| |||||||||||    |||| ||  ||||    
T  34374218 tatttttcaaatcaaaccatctccgcaattcactcaatgggatccaagagagtggtctcttgttcattggaagagtcaacatgcatgggaatctctttat 34374119  T
Q  211 cataataagaactcggggtcgagttctttagaggtggaggagact 255  Q
    || ||| |||||||||||| |||||||| ||| ||||||||||||    
T  34374118 caaaatgagaactcggggtggagttcttcagatgtggaggagact 34374074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 133 - 270
Target Start/End: Original strand, 18203109 - 18203249
Alignment:
Q  133 atctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaa----catgggaagcttcttatcataataagaactcgggg 228  Q
    ||||| |||||||||| ||||||||| ||||||| |||||||||||| || || |||||||    ||||| || ||  |||| | ||| ||||||| |||    
T  18203109 atcttggcatttcactgaatgggatctaggagggtggtctcttgttcattcgaggagtcaacatgcatggaaaactctttattaaaatgagaactc-ggg 18203207  T
Q  229 tcgagttctttagaggtggaggagactgatgcaggagagttt 270  Q
    |||||||||| |||||||||||||||||||| ||||| ||||    
T  18203208 tcgagttcttcagaggtggaggagactgatgtaggagggttt 18203249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 151 - 282
Target Start/End: Original strand, 12881715 - 12881849
Alignment:
Q  151 atgggatccaggagggcggtctcttgttcgttggatgagtcaacatg----ggaagcttcttatcataataagaactcggggtcgagttctttagaggtg 246  Q
    |||||||||||||||| |||||||||||| ||| |  ||||||||||    ||||| ||||||||  ||| ||| |||||||||||||||||   |||||    
T  12881715 atgggatccaggagggtggtctcttgttcattgaagaagtcaacatgcatgggaag-ttcttatcggaatgagagctcggggtcgagttcttcttaggtg 12881813  T
Q  247 gaggagactgatgcaggagagttttattagtaattt 282  Q
    ||||||||||||| ||||| ||||  ||||||||||    
T  12881814 gaggagactgatgtaggagggtttccttagtaattt 12881849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 218 - 282
Target Start/End: Original strand, 3541960 - 3542024
Alignment:
Q  218 agaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaattt 282  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||| | ||  ||||||||||    
T  3541960 agaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaattt 3542024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 218 - 282
Target Start/End: Original strand, 30049630 - 30049694
Alignment:
Q  218 agaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaattt 282  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||| | ||  ||||||||||    
T  30049630 agaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaattt 30049694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 218 - 282
Target Start/End: Original strand, 30051917 - 30051981
Alignment:
Q  218 agaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaattt 282  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||| | ||  ||||||||||    
T  30051917 agaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaattt 30051981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 11194401 - 11194448
Alignment:
Q  240 agaggtggaggagactgatgcaggagagttttattagtaatttagtag 287  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||    
T  11194401 agaggtggaggagactgatgtaggagagttttcttagtaatttagtag 11194448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 259
Target Start/End: Complemental strand, 12778813 - 12778692
Alignment:
Q  140 catttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaacatg----ggaagcttcttatcataataagaactcggggtcgagtt 235  Q
    ||||||||| ||||||||||| |||||  ||||||||||| ||||| |||||||||||    |||| ||   ||||| ||| |||| | |||||| ||||    
T  12778813 catttcacttaatgggatccaagagggttgtctcttgttcattggaggagtcaacatgcaaaggaaact--ctatcagaatgagaatttggggtcaagtt 12778716  T
Q  236 ctttagaggtggaggagactgatg 259  Q
    ||| ||||||||||||||||||||    
T  12778715 cttcagaggtggaggagactgatg 12778692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 271
Target Start/End: Original strand, 32361106 - 32361173
Alignment:
Q  204 ttcttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagtttt 271  Q
    ||||||||||||| |||||||| ||||||||| ||||||||||||| ||||| ||| ||||| |||||    
T  32361106 ttcttatcataatgagaactcgaggtcgagttttttagaggtggagaagactaatgtaggagggtttt 32361173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 8047836 - 8047760
Alignment:
Q  90 ttcaatggcataaaggcaattactatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggaggg 166  Q
    |||| |||||||| || |||| ||||||||||||||  ||  ||||||| ||||| ||||||||||||| |||||||    
T  8047836 ttcactggcataatggaaattgctatatttttcaaattaaaccatctttacattttactcaatgggatcgaggaggg 8047760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 218 - 261
Target Start/End: Complemental strand, 8047704 - 8047661
Alignment:
Q  218 agaactcggggtcgagttctttagaggtggaggagactgatgca 261  Q
    ||||||||||||| ||||||| ||||||||||||||| ||||||    
T  8047704 agaactcggggtcaagttcttcagaggtggaggagaccgatgca 8047661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 18720020 - 18720069
Alignment:
Q  207 ttatcataataagaactcggggtcgagttctttagaggtggaggagactg 256  Q
    |||||| ||| |||| |||||||||||||||| | |||||||||||||||    
T  18720020 ttatcaaaattagaattcggggtcgagttcttcaaaggtggaggagactg 18720069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 90 - 179
Target Start/End: Complemental strand, 144363 - 144274
Alignment:
Q  90 ttcaatggcataaaggcaattactatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggtctcttgttc 179  Q
    |||||||| |||||||||| |||||||||||||||| |||  ||||||||||||||| |||||||||||||| ||||  |||||||||||    
T  144363 ttcaatgggataaaggcaactactatatttttcaaatcaaaccatctttgcatttcattcaatgggatccagaagggtcgtctcttgttc 144274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 278
Target Start/End: Original strand, 145364 - 145555
Alignment:
Q  93 aatggcataaaggcaattactatatttttcaaaccaagtcatctttgcatttcactcaatgggatccaggagggcggt--ctcttgttcgttggatgagt 190  Q
    ||||| |||||||||| | |||||||||||||| |||  ||| |||| |||| |||||||||||||||| || |  ||  ||||||||| ||| | ||||    
T  145364 aatgggataaaggcaactgctatatttttcaaatcaaaccatatttgtattttactcaatgggatccagaagagtagtgtctcttgttcattgaaggagt 145463  T
Q  191 caaca-tg---gga-agcttcttatcataataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagta 278  Q
    ||||| ||   ||| | ||  |||||| ||||| |||||||| || |||||||  ||||||||||||||||||| ||||| ||||||||||||    
T  145464 caacaatgaacggacaactctttatcagaataataactcggg-tcaagttcttctgaggtggaggagactgatgtaggagggttttattagta 145555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 218 - 282
Target Start/End: Complemental strand, 45992 - 45928
Alignment:
Q  218 agaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaattt 282  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||| | ||  ||||||||||    
T  45992 agaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaattt 45928  T

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Target: scaffold0240 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 15676 - 15741
Alignment:
Q  132 catctttgcatttcactcaatgggatccaggagggcggtctcttgttcgttggatgagtcaacatg 197  Q
    ||||||| ||||||| ||||||||| |  |||||| |||||| ||||| ||||| |||||||||||    
T  15676 catcttttcatttcattcaatgggaccttggagggtggtctcctgttcattggaggagtcaacatg 15741  T

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