View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5743_low_10 (Length: 214)
Name: NF5743_low_10
Description: NF5743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5743_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 14598684 - 14598482
Alignment:
| Q |
1 |
tgaccttgccgtcctttatgagaaatttgatgctccatccccagaaaatcccacagggagatctgatctgcctggttgtgacctctttgtgtcaactgct |
100 |
Q |
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| T |
14598684 |
tgaccttgccgtcctttatgagaaatttgatgctccatccccagaaaatcccacagggagatctgatctgcctggttgtgacctctttgtgtcaactgct |
14598585 |
T |
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| Q |
101 |
gatcctgaaaaggagccgcctcttgtaactgccaataccattctttccatattagcagttgattaccctgtggagaaactcgcttgttatgtttcagatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14598584 |
gatcctgaaaaggagccgcctcttgtaactgccaataccattctttccatattagcagttgattaccctgtggagaaactcgcttgttatgtttcagatg |
14598485 |
T |
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| Q |
201 |
atg |
203 |
Q |
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||| |
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| T |
14598484 |
atg |
14598482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 46 - 203
Target Start/End: Original strand, 14609837 - 14609994
Alignment:
| Q |
46 |
aaatcccacagggagatctgatctgcctggttgtgacctctttgtgtcaactgctgatcctgaaaaggagccgcctcttgtaactgccaataccattctt |
145 |
Q |
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| T |
14609837 |
aaatcccacagcaagatctgatctgcctggttgtgacctctttgtgtcgacggctgatcctgataaagagccgcctcttgtaactgccaataccattctt |
14609936 |
T |
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| Q |
146 |
tccatattagcagttgattaccctgtggagaaactcgcttgttatgtttcagatgatg |
203 |
Q |
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| T |
14609937 |
tccatattagcagttgattatccagtggagaagctcgcttgttatgtttcagatgatg |
14609994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 41 - 192
Target Start/End: Complemental strand, 12194952 - 12194801
Alignment:
| Q |
41 |
ccagaaaatcccacagggagatctgatctgcctggttgtgacctctttgtgtcaactgctgatcctgaaaaggagccgcctcttgtaactgccaatacca |
140 |
Q |
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|||| |||||| ||||||| ||||||||| || || ||| | |||||||||||||| ||||| ||||| ||||| || ||||| || || ||||||| |
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| T |
12194952 |
ccagcaaatccaacagggaaatctgatctcccgggaattgatatgtttgtgtcaactgccgatccagaaaaagagccaccccttgttaccgcaaatacca |
12194853 |
T |
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| Q |
141 |
ttctttccatattagcagttgattaccctgtggagaaactcgcttgttatgt |
192 |
Q |
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||||||| || ||||||||||||||||||| || |||||||| |||||||| |
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| T |
12194852 |
ttctttcaattctagcagttgattaccctgttgataaactcgcatgttatgt |
12194801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 203
Target Start/End: Original strand, 44632884 - 44633032
Alignment:
| Q |
55 |
agggagatctgatctgcctggttgtgacctctttgtgtcaactgctgatcctgaaaaggagccgcctcttgtaactgccaataccattctttccatatta |
154 |
Q |
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|||||| |||||||| ||||| ||| ||||||| |||||||| ||||| ||||| ||||| |||||||||||||| || |||||| | || || | |
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| T |
44632884 |
agggaggtctgatctccctggaattgatgtctttgtttcaactgcagatccagaaaaagagccacctcttgtaactgcaaacaccattttatctatcctt |
44632983 |
T |
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| Q |
155 |
gcagttgattaccctgtggagaaactcgcttgttatgtttcagatgatg |
203 |
Q |
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||||||||||| |||||||| ||| | ||||||||| | || ||||||| |
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| T |
44632984 |
gcagttgattatcctgtggaaaaagttgcttgttatttgtctgatgatg |
44633032 |
T |
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