View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5743_low_2 (Length: 558)
Name: NF5743_low_2
Description: NF5743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5743_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 3e-68; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 232 - 393
Target Start/End: Original strand, 12381295 - 12381453
Alignment:
| Q |
232 |
accaggttgttccttcaaatataaccagaatcgagaagaagaaaattgtctttgaaaacaatatagaaagagagtttgatgcaattgtttttgctaccgg |
331 |
Q |
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| T |
12381295 |
accaggttgttccttcaaatataaccagaattgagaagaagaaaattgtctttgaaaacaatgtagaaagagagtttgatgcaattgtttttgctaccgg |
12381394 |
T |
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| Q |
332 |
ctacaaaagcatagctaatggatggctcaaggtataaaagttcttcttattcttgatagaaa |
393 |
Q |
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| T |
12381395 |
ctataaaagtatagctaatggatggctcaaggtataaaag---ttcttattcttgatagaaa |
12381453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 412 - 539
Target Start/End: Original strand, 12381447 - 12381583
Alignment:
| Q |
412 |
atagaaaattaatgaaccaatcttattggtaatttgcaaattaataagattattgt---------gcatttttgaaggactacaaatatgctcttaatga |
502 |
Q |
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| T |
12381447 |
atagaaaattaatgaaccaatcttattggtaatttgcaaattaataagattattgtttgatatttgcatttttgaaggactacaaatatgctcttaatga |
12381546 |
T |
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| Q |
503 |
taaaggaatgccgaaaaatgctttcccgaaacattgg |
539 |
Q |
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| T |
12381547 |
taaaggaatgcctaaaaatgctttcccaaaacattgg |
12381583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 12380989 - 12381064
Alignment:
| Q |
14 |
aatattacaggaaagtcggccgttattgatgttggaaccattggaaagattaaggagggagctataaaggtaaatt |
89 |
Q |
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| T |
12380989 |
aatattacaggaaagtctgccgttattgatgttggaaccattggaaagattaaggagggtgctataaaggtaaatt |
12381064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 12381110 - 12381151
Alignment:
| Q |
190 |
ttttttaagtttattcaatatctaatgtatttggtctatata |
231 |
Q |
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| T |
12381110 |
ttttttaggttcattcaatatctaatgtatttggtctatata |
12381151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 234 - 367
Target Start/End: Original strand, 14353959 - 14354092
Alignment:
| Q |
234 |
caggttgttccttcaaatataaccagaatcgagaagaagaaaattgtctttgaaaacaatatagaaagagagtttgatgcaattgtttttgctaccggct |
333 |
Q |
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| T |
14353959 |
caggttgtttcttcatatattacgagaattgagaaaaagaaagttgtatttgaaaacaacatggaaaaagagtttgatgcgatcgtttttgcaactggct |
14354058 |
T |
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| Q |
334 |
acaaaagcatagctaatggatggctcaaggtata |
367 |
Q |
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| T |
14354059 |
acaaaagcatagctaatgggtggcttaaggtata |
14354092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 14353805 - 14353879
Alignment:
| Q |
11 |
aagaatattacaggaaagtcggccgttattgatgttggaaccattggaaagattaaggagggagctataaaggta |
85 |
Q |
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| T |
14353805 |
aagaatgtgacaggaaagtctgcagttattgatgttggaaccgttgaaaagattaaggaggggtctataaaggta |
14353879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 477 - 531
Target Start/End: Original strand, 14354264 - 14354318
Alignment:
| Q |
477 |
aaggactacaaatatgctcttaatgataaaggaatgccgaaaaatgctttcccga |
531 |
Q |
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| T |
14354264 |
aaggattacaaatatgctcttaatgagaaagggatgccaaaaaatgcttacccga |
14354318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 367
Target Start/End: Complemental strand, 43883628 - 43883491
Alignment:
| Q |
234 |
caggttgttccttcaaatata-accagaatcgagaagaagaaaattgtc---tttgaaaacaatatagaaagagagtttgatgcaattgtttttgctacc |
329 |
Q |
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| T |
43883628 |
caggttgttccttcagatatttacgagaattgagaaaaagaaagttgtactatttggaaacaacatggaaaaagagtttgatgtaatcgttttcgcgact |
43883529 |
T |
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| Q |
330 |
ggctacaaaagcatagctaatggatggctcaaggtata |
367 |
Q |
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| T |
43883528 |
ggctacaaaagcatagctaatgggtggcttaatgtata |
43883491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 32082198 - 32082160
Alignment:
| Q |
191 |
tttttaagtttattcaatatctaatgtatttggtctata |
229 |
Q |
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| T |
32082198 |
tttttaagtttattcaacatctaatatatttggtctata |
32082160 |
T |
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