View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5743_low_4 (Length: 474)
Name: NF5743_low_4
Description: NF5743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5743_low_4 |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 393; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 10 - 457
Target Start/End: Complemental strand, 16875871 - 16875430
Alignment:
| Q |
10 |
attattctatggttctcagctgtttgattaggaatatgaaatttcaactatctattatgttacagatgggtaaataataggtatcctttcttggtgtctt |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16875871 |
attagtctatggttctcagctgtttgattaggaatatgaaatttcaactatctattatgttacagatgggtaaataataggtatcctttcttggtgtctt |
16875772 |
T |
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| Q |
110 |
cctttaacttcaacttgggcatgtgtaggtctagccccacgtgatttttgagtactaacaaaatactttcattgattgtgttgtgtggctgtactctttt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16875771 |
cctttaacttcaacttgggcatgtgtaggtctagccccacgtgatttttgagtactaacaaaatactttcattgattgtgttgtgtggctgtactctttt |
16875672 |
T |
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| Q |
210 |
caacaagtaatcacaaaatataggatcagctttcattatattacacacaaaatcacataatagaccagaatgataatactatgcaagtt--acactcatt |
307 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
16875671 |
caacaagttatcacaaaatataggatcagcttgcattatattacacacaaaatcac---atagaccagaatgataatactatgcaagttacacactcatt |
16875575 |
T |
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| Q |
308 |
tcaaataatgagtaatttaatttattgtttcaggcaattgattgtttcgttgtatttcagttttaactgcaatcaaaccataacacaagacggtcacaac |
407 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16875574 |
tcaaataatgag-----taatttattgtttcaggcaattgattgtttcgttgtatttcagttttaactgcaatcaaaccataacacaagacggtcacaac |
16875480 |
T |
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| Q |
408 |
agttaaatttcatctttagtttatatacagcttcataaagatctttaatt |
457 |
Q |
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| T |
16875479 |
agttaaatttcatctttagtttatatacagcttcataaagatctttaatt |
16875430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 328 - 457
Target Start/End: Complemental strand, 16581626 - 16581497
Alignment:
| Q |
328 |
tttattgtttcaggcaattgattgtttcgttgtatttcagttttaactgcaatcaaaccataacacaagacggtcacaacagttaaatttcatctttagt |
427 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||| |||||||| |
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| T |
16581626 |
tttactgtttcaggcaattgattgtttcgttgtatttcagttttaactgcaatcaaatcttaacacaagatggtcacaacagttaaatttcctctttagt |
16581527 |
T |
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| Q |
428 |
ttatatacagcttcataaagatctttaatt |
457 |
Q |
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| T |
16581526 |
ttatgtacagctccataaagatctttaatt |
16581497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 328 - 457
Target Start/End: Original strand, 16613754 - 16613883
Alignment:
| Q |
328 |
tttattgtttcaggcaattgattgtttcgttgtatttcagttttaactgcaatcaaaccataacacaagacggtcacaacagttaaatttcatctttagt |
427 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||| |||||||| |
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| T |
16613754 |
tttactgtttcaggcaattgattgtttcgttgtatttcagttttaactgcaatcaaatcttaacacaagatggtcacaacagttaaatttcctctttagt |
16613853 |
T |
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| Q |
428 |
ttatatacagcttcataaagatctttaatt |
457 |
Q |
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| T |
16613854 |
ttatgtacagctccataaagatctttaatt |
16613883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 167 - 268
Target Start/End: Original strand, 16783139 - 16783240
Alignment:
| Q |
167 |
acaaaatactttcattgattgtgttgtgtggctgtactcttttcaacaagtaatcacaaaatataggatcagctttcattatattacacacaaaatcaca |
266 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
16783139 |
acaaaatactttcattgattgtgttgtgtggctgtaatcttttcaacaagttatcacaaaatataggatcagcttgcattatattacacacaaaatcaca |
16783238 |
T |
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| Q |
267 |
ta |
268 |
Q |
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|| |
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| T |
16783239 |
ta |
16783240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 167 - 362
Target Start/End: Complemental strand, 38942244 - 38942055
Alignment:
| Q |
167 |
acaaaatactttcattgattgtgttgtgtggctgtactcttttcaacaagtaatcacaaaatataggatcagctttcattatattacacacaaaatcaca |
266 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
38942244 |
acaaaatactttcattgattgtgttgtgtggctgtaatattttcaacaagttatcacaaaatataggatcagcttgcattatgttacacacaaaatcac- |
38942146 |
T |
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| Q |
267 |
taatagaccagaatgataatactatgcaagttacactc--atttcaaataatgagtaatttaatttattgtttcaggcaattgattgtttcgttgtat |
362 |
Q |
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| T |
38942145 |
--atagaccagaatgataataatatgcaagttacactctgatttgaaagaatgag-----taattaactatttcatgcaattgattgtttcgttgtat |
38942055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 10507 - 10554
Alignment:
| Q |
27 |
agctgtttgattaggaatatgaaatttcaac--tatctattatgttac |
72 |
Q |
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| T |
10507 |
agctgtttggtcaggaatatgaaatttcaactatatctattatgttac |
10554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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