View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5743_low_6 (Length: 339)
Name: NF5743_low_6
Description: NF5743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5743_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 14598757 - 14598862
Alignment:
| Q |
2 |
gtaattgacatgagccataaccatattgcatcttcatttggattggtcactctccaatgtaaaaagaagcacatcactactaagcgaatagcaataagag |
101 |
Q |
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| T |
14598757 |
gtaattgacatgagccataaccatattgcatcttcatttggattggtcactctccaatgtaaaaagaagcacatcactaccaagcgaatagcaataagag |
14598856 |
T |
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| Q |
102 |
ccctgt |
107 |
Q |
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| T |
14598857 |
ccctgt |
14598862 |
T |
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Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 14609719 - 14609622
Alignment:
| Q |
2 |
gtaattgacatgagccataaccatattgcatcttcatttggattggtcactctccaatgtaaaaagaagcacatcactactaagcgaatagcaataag |
99 |
Q |
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| T |
14609719 |
gtaattgacataacccacaaccatactgcctctttatttggatgtgtcactctccaatgtaaaaagaagcacattactactaagcgaacaccaataag |
14609622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 14599032 - 14599077
Alignment:
| Q |
277 |
ggagttatgatgccatttggaattggtgttcttctacacaaaggct |
322 |
Q |
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| T |
14599032 |
ggagttatgatgccatttggaattggtgttcttctacacaaaggct |
14599077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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