View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5743_low_7 (Length: 286)
Name: NF5743_low_7
Description: NF5743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5743_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 46302934 - 46302661
Alignment:
| Q |
1 |
tatatcaataaacaaaattacactataaaattctaattgcagtaaactatatagacattgctgttaatgacatcattctgaacctgaagagcgacggg-t |
99 |
Q |
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| T |
46302934 |
tatatcaataatcaaaattacactataaaattctaattgcagtaaactatatagacattgctgttaatgacatcattctgaacctgaagagcgacggggt |
46302835 |
T |
|
| Q |
100 |
gtcaaatcaagagacacgtat-aaaaaactgtttaaaactacattagttaagaaaatcctaaattaaaaatttcccttttttaagtagagtcaatttaac |
198 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
46302834 |
gtcaaatcaagagacacatatcaaaaaactgtttaaaactacattagttaagaaaatcctaaattacaaattttccttttttaagtagagtcaatttaac |
46302735 |
T |
|
| Q |
199 |
tgatgatgttgatattattaggttggacacacattcaacaacatagttcgaactcgagatttcatggttggatgtg |
274 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46302734 |
tgatgatgttgatattattaggttgga--cacattcaacaacatagttcgaactcgagatttcatggttggatgtg |
46302661 |
T |
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