View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5743_low_9 (Length: 218)
Name: NF5743_low_9
Description: NF5743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5743_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 79 - 197
Target Start/End: Original strand, 48193887 - 48194006
Alignment:
| Q |
79 |
agtagcggagccagaatatttagatcatgggg-catataagatatagatttgtctcaatgactattttcaaaatattatctttttctataatttttgcta |
177 |
Q |
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| T |
48193887 |
agtagcggagccagaatatttagatcgtgggggcatataagatatggatttgtctcaatgagtattttcaaaatattatctttttctataatttttgcta |
48193986 |
T |
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| Q |
178 |
atagatgattataagtatta |
197 |
Q |
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| T |
48193987 |
atagatgattataagtatta |
48194006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 82 - 197
Target Start/End: Complemental strand, 1532759 - 1532643
Alignment:
| Q |
82 |
agcggagccagaatatttagatcatgggg-catataagatatagatttgtctcaatgactattttcaaaatattatctttttctataatttttgctaata |
180 |
Q |
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| T |
1532759 |
agcggagccagaatatttagatcgtgggggcatataagatatggatttgtctcaatgagtattttcaaaatattatctttttctataatttttgctaata |
1532660 |
T |
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| Q |
181 |
gatgattataagtatta |
197 |
Q |
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| T |
1532659 |
gatgattataagtatta |
1532643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 81 - 197
Target Start/End: Original strand, 51265419 - 51265536
Alignment:
| Q |
81 |
tagcggagccagaatatttagatcatgggg-catataagatatagatttgtctcaatgactattttcaaaatattatctttttctataatttttgctaat |
179 |
Q |
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| T |
51265419 |
tagcggagccagaatatttagatcgtgggggcatataagatatggatttgtctcaatgagtatttttaaaatattatctttttctataatttttgctaat |
51265518 |
T |
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| Q |
180 |
agatgattataagtatta |
197 |
Q |
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| T |
51265519 |
agatgattataagtatta |
51265536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 7e-45; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 83 - 197
Target Start/End: Complemental strand, 18470723 - 18470608
Alignment:
| Q |
83 |
gcggagccagaatatttagatcatggggc-atataagatatagatttgtctcaatgactattttcaaaatattatctttttctataatttttgctaatag |
181 |
Q |
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| T |
18470723 |
gcggagccagaatatttagatcgtgggggtatataagatatggatttgtctcaatgagtattttcaaaatattatctttttctataatttttgctaatag |
18470624 |
T |
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| Q |
182 |
atgattataagtatta |
197 |
Q |
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| T |
18470623 |
atgattataagtatta |
18470608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 32141656 - 32141595
Alignment:
| Q |
16 |
attaaagataatcattataaagttgcaagaagttcacaaagtggtgtgattgtgatcttaat |
77 |
Q |
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| T |
32141656 |
attaaagataatcattataaagttgcaagaagttctcaaagtggtgtgattgtgatcataat |
32141595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 16026572 - 16026518
Alignment:
| Q |
143 |
tttcaaaatattatctttttctataatttttgctaatagatgattataagtatta |
197 |
Q |
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| T |
16026572 |
tttcaaaatattatatttttctataatttttgctaatagatgattataagtatta |
16026518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 16027009 - 16026939
Alignment:
| Q |
83 |
gcggagccagaatatttagatcatgggg-catataagatatagatttgtctcaatgactattttcaaaata |
152 |
Q |
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| T |
16027009 |
gcggagccagaatatttagatcgtgggggcatataagatatggatttgtctcaatgagtattttcaaaata |
16026939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 36218683 - 36218650
Alignment:
| Q |
122 |
tagatttgtctcaatgactattttcaaaatatta |
155 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
36218683 |
tagatttgtctcaatgaatattttcaaaatatta |
36218650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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