View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5744-Insertion-3 (Length: 750)

Name: NF5744-Insertion-3
Description: NF5744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5744-Insertion-3
NF5744-Insertion-3
[»] chr6 (16 HSPs)
chr6 (8-664)||(33582896-33583556)
chr6 (6-124)||(17543504-17543622)
chr6 (8-124)||(7223754-7223870)
chr6 (8-124)||(11327336-11327452)
chr6 (8-124)||(19748572-19748688)
chr6 (8-124)||(7918124-7918240)
chr6 (8-124)||(22498214-22498330)
chr6 (6-120)||(26053074-26053188)
chr6 (6-120)||(26073127-26073241)
chr6 (8-116)||(15527892-15528000)
chr6 (8-124)||(17103434-17103550)
chr6 (83-123)||(3573674-3573714)
chr6 (8-124)||(27890625-27890741)
chr6 (18-118)||(31108404-31108504)
chr6 (87-129)||(17250375-17250417)
chr6 (23-120)||(27614434-27614531)
[»] chr7 (13 HSPs)
chr7 (8-123)||(17811587-17811702)
chr7 (14-121)||(8304331-8304438)
chr7 (8-123)||(24989549-24989663)
chr7 (87-126)||(10285675-10285714)
chr7 (8-123)||(44944620-44944735)
chr7 (19-123)||(5058778-5058882)
chr7 (40-124)||(1981099-1981182)
chr7 (8-65)||(5715524-5715582)
chr7 (440-506)||(18475429-18475495)
chr7 (15-123)||(14055503-14055610)
chr7 (15-123)||(14365531-14365638)
chr7 (13-53)||(23618273-23618314)
chr7 (8-68)||(26565377-26565438)
[»] chr1 (20 HSPs)
chr1 (8-123)||(14074258-14074373)
chr1 (8-124)||(25146542-25146658)
chr1 (8-130)||(13100429-13100551)
chr1 (8-122)||(21846050-21846164)
chr1 (13-121)||(17197306-17197414)
chr1 (582-638)||(25122857-25122913)
chr1 (430-506)||(25122987-25123063)
chr1 (16-124)||(22789430-22789538)
chr1 (8-121)||(16125232-16125345)
chr1 (8-65)||(23528895-23528953)
chr1 (8-124)||(9351837-9351953)
chr1 (8-68)||(18304640-18304701)
chr1 (8-115)||(9954816-9954923)
chr1 (13-124)||(17055694-17055804)
chr1 (8-116)||(9128619-9128728)
chr1 (87-125)||(9954769-9954807)
chr1 (87-124)||(18304592-18304629)
chr1 (87-124)||(30619259-30619295)
chr1 (87-124)||(41032547-41032584)
chr1 (16-124)||(42179845-42179953)
[»] chr5 (11 HSPs)
chr5 (8-122)||(18843954-18844068)
chr5 (14-123)||(15051872-15051981)
chr5 (8-123)||(41688441-41688556)
chr5 (14-123)||(27339962-27340071)
chr5 (8-125)||(41427658-41427775)
chr5 (13-124)||(19579187-19579299)
chr5 (8-123)||(20321182-20321297)
chr5 (8-65)||(19042260-19042318)
chr5 (8-124)||(18051307-18051423)
chr5 (8-67)||(19377842-19377902)
chr5 (87-124)||(6852340-6852377)
[»] chr8 (13 HSPs)
chr8 (8-124)||(11879839-11879955)
chr8 (8-124)||(11897255-11897371)
chr8 (8-119)||(45403268-45403379)
chr8 (13-114)||(2040363-2040464)
chr8 (8-121)||(5922287-5922400)
chr8 (8-123)||(17647236-17647351)
chr8 (8-125)||(7489056-7489173)
chr8 (87-124)||(29384086-29384123)
chr8 (46-123)||(31424442-31424518)
chr8 (8-124)||(40541594-40541710)
chr8 (8-62)||(15294908-15294963)
chr8 (8-62)||(15475277-15475332)
chr8 (16-65)||(27836131-27836181)
[»] chr4 (10 HSPs)
chr4 (8-124)||(9770351-9770467)
chr4 (14-124)||(6346729-6346839)
chr4 (8-122)||(23064737-23064851)
chr4 (8-124)||(55476227-55476343)
chr4 (8-124)||(5375904-5376020)
chr4 (8-123)||(36121062-36121177)
chr4 (32-125)||(7045207-7045300)
chr4 (87-124)||(8889534-8889571)
chr4 (44-120)||(46664152-46664227)
chr4 (87-124)||(24719886-24719923)
[»] chr2 (9 HSPs)
chr2 (8-124)||(20063962-20064078)
chr2 (8-124)||(974577-974694)
chr2 (8-124)||(19245828-19245944)
chr2 (8-125)||(19262089-19262206)
chr2 (13-113)||(27523881-27523981)
chr2 (13-124)||(7302026-7302137)
chr2 (13-116)||(20034004-20034107)
chr2 (8-123)||(30433054-30433169)
chr2 (8-123)||(1405022-1405137)
[»] chr3 (13 HSPs)
chr3 (15-116)||(3041469-3041570)
chr3 (8-124)||(8592173-8592289)
chr3 (8-124)||(28746015-28746131)
chr3 (14-125)||(22971054-22971164)
chr3 (14-124)||(29067522-29067631)
chr3 (8-125)||(27090681-27090798)
chr3 (8-124)||(8560231-8560347)
chr3 (8-124)||(20766675-20766791)
chr3 (87-124)||(41671497-41671534)
chr3 (13-123)||(22355841-22355951)
chr3 (87-124)||(24649523-24649560)
chr3 (8-120)||(27676675-27676787)
chr3 (88-125)||(42697166-42697203)
[»] scaffold0016 (1 HSPs)
scaffold0016 (8-125)||(56198-56315)
[»] scaffold0186 (1 HSPs)
scaffold0186 (8-124)||(8680-8796)
[»] scaffold0048 (1 HSPs)
scaffold0048 (8-68)||(61143-61204)
[»] scaffold0079 (1 HSPs)
scaffold0079 (13-124)||(14700-14811)
[»] scaffold0603 (1 HSPs)
scaffold0603 (14-116)||(8741-8843)
[»] scaffold0027 (1 HSPs)
scaffold0027 (13-65)||(132947-133000)
[»] scaffold0017 (1 HSPs)
scaffold0017 (87-124)||(38301-38338)


Alignment Details
Target: chr6 (Bit Score: 522; Significance: 0; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 8 - 664
Target Start/End: Complemental strand, 33583556 - 33582896
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaatcttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatcc 107  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  33583556 atatcgattctacaaaagtccttaagtaaaatcttcgattttgattttgattttacgatttacgattattgctaacccctttcgaccggaagtaaaatcc 33583457  T
Q  108 cgattttgacaaccttgtccatacttattacccatatttcaattnnnnnnnttatcaattacaaaaatattgtatgatattaaaacaattaatatcagct 207  Q
    ||||||||||||| ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  33583456 cgattttgacaacgttgtccatacttattacccatatttcaattaaaaaaattatcaattacaaaaatattgtatgatattaaaacaattaatatcatct 33583357  T
Q  208 gataatgtcgtactcgtgtccacaattaatatcacctgtataagccattctaaattaacccaaaccaatcgtcctcccagattacaaatcctggataaca 307  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||    
T  33583356 gataatgtcgtactcgagtccacaattaatatcatctgtataagccattctaaattcacccaaaccaatcgtcctcctggattacaaatcctggataaca 33583257  T
Q  308 gaactcttagtggaaaactggacaaatgaagataatgaattacatattttagatcgagattgaaatctgaggaatataaaaattggtgatcgaaataaat 407  Q
    ||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  33583256 gaactcttagtggaaaactggacaaagcaagataatgatttacatattttagatcgagtttgaaatttgaggaatataaaaattggtgatcgaaataaat 33583157  T
Q  408 atggggaaaaatgaacattactagcatggtggactaaaatagaaaaaccatttggaaggttagcatttataggtttaatcttgtaaaatgatgtaaaaca 507  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33583156 atgggaaaaaatgaacattactagcatgatggactaaaatagaaaaaccatttggaaggttagcatttataggtttaatcttgtaaaatgaagtaaaaca 33583057  T
Q  508 attnnnnnnnttacaattgtgatcatagcttatgtatgaatcttttagagaataatcagatgaagaatgaataaaacaagaaataaaactatgtatacct 607  Q
    |||       ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33583056 attaaaagaattacaattgtgatcatagcttatatatcaatcttttagagaataatcagatgaagaatgaataaaacaagaaataaaactatgtatacct 33582957  T
Q  608 gtctgagaagcatca----ataggtgaatgacctaaagaagagacggtgcttatatgatta 664  Q
    |||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||    
T  33582956 gtctgagaagcatcaatatataggtgaatgacctaaagaagagacggtgcttatatgatta 33582896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 6 - 124
Target Start/End: Complemental strand, 17543622 - 17543504
Alignment:
Q  6 caatatggattctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaa 104  Q
    |||||| |||||||||||||||||| ||||||||| |||||||||||||| ||||||| || |  ||||| ||||||  ||||||||||||||||||||     
T  17543622 caatatcgattctacaaaagtccttgagtaaaatccttcgattttgatttcgattttatgagtcccgatt-ttgctattccttttcgacctgaagtaaag 17543524  T
Q  105 tcccgattttgacaaccttg 124  Q
    |||| ||||| |||||||||    
T  17543523 tcccaattttaacaaccttg 17543504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 7223754 - 7223870
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| |||||||||||||||||| ||||||||| |||||||||||||   ||||||||| |  ||||| ||||||  || ||||||||||||||||| ||    
T  7223754 atatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcaattttacgagtcccgatt-ttgctattccctttcgacctgaagtaaagtc 7223852  T
Q  107 ccgattttgacaaccttg 124  Q
    ||||||||||||||||||    
T  7223853 ccgattttgacaaccttg 7223870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 11327452 - 11327336
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaat-cttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| |||||||||||||||||| |||||||| ||||||||||||||  |||||||||| |  ||||| ||||||  || |||| ||||||||||||  |    
T  11327452 atatcgattctacaaaagtccttgagtaaaattcttcgattttgattgcgattttacgagtctcgatt-ttgctattccctttcaacctgaagtaaagcc 11327354  T
Q  107 ccgattttgacaaccttg 124  Q
    ||||||||||||||||||    
T  11327353 ccgattttgacaaccttg 11327336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 19748572 - 19748688
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| |||||||||||||||||| ||||||||| |||||||||||||  |||||||||| |  ||||| ||||||  || |||| ||||||| |||| ||    
T  19748572 atatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttacgaatcccgatt-ttgctattccctttcaacctgaattaaagtc 19748670  T
Q  107 ccgattttgacaaccttg 124  Q
    ||||||||||||||||||    
T  19748671 ccgattttgacaaccttg 19748688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 7918240 - 7918124
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaa-tcttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| |||||||||||||||||| ||||||| |||||||||||||||   ||||||||| |   ||||  |||||  || |||||||||||||||||  |    
T  7918240 atattgattctacaaaagtccttgagtaaaattcttcgattttgattgcaattttacgagtcctgatt-ctgctattccctttcgacctgaagtaaagcc 7918142  T
Q  107 ccgattttgacaaccttg 124  Q
    ||||||||||||||||||    
T  7918141 ccgattttgacaaccttg 7918124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 22498330 - 22498214
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| ||||||||||||||| || ||||||||| ||| |||||||||  |||||||||| |  | ||| ||||||  || ||||||||||||||||| ||    
T  22498330 atatcgattctacaaaagtctttgagtaaaatcgttcaattttgattgcgattttacgagtcccaatt-ttgctattccctttcgacctgaagtaaagtc 22498232  T
Q  107 ccgattttgacaaccttg 124  Q
    || |||||||||||||||    
T  22498231 ccaattttgacaaccttg 22498214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 120
Target Start/End: Complemental strand, 26053188 - 26053074
Alignment:
Q  6 caatatggattctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaa 104  Q
    |||||| ||||||||||||||| || ||||||||| |||||||||||||  |||||||||| |  | ||| ||||||   | |||||||||||||||||     
T  26053188 caatatcgattctacaaaagtcattgagtaaaatcattcgattttgattgggattttacgagtcccaatt-ttgctatttcctttcgacctgaagtaaag 26053090  T
Q  105 tcccgattttgacaac 120  Q
    ||| ||||||||||||    
T  26053089 tcctgattttgacaac 26053074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 120
Target Start/End: Complemental strand, 26073241 - 26073127
Alignment:
Q  6 caatatggattctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaa 104  Q
    |||||| ||||||||||||||| || ||||||||| |||||||||||||  |||||||||| |  | ||| ||||||   | |||||||||||||||||     
T  26073241 caatatcgattctacaaaagtcattgagtaaaatcattcgattttgattgggattttacgagtcccaatt-ttgctatttcctttcgacctgaagtaaag 26073143  T
Q  105 tcccgattttgacaac 120  Q
    ||| ||||||||||||    
T  26073142 tcctgattttgacaac 26073127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 15528000 - 15527892
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaat-cttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| |||||||||||||||||| |||||||| ||||||||||||||  |||||| ||| || ||||| ||||||   | ||||||||||||||||| ||    
T  15528000 atatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttccgagttccgatt-ttgctatttcctttcgacctgaagtaaagtc 15527902  T
Q  107 ccgattttga 116  Q
      ||||||||    
T  15527901 aggattttga 15527892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 17103434 - 17103550
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| |||||||||||||||||| ||||||||| |||| | ||||||  |||||||||| |   |||| ||| ||  || ||||||| ||||||||| ||    
T  17103434 atatcgattctacaaaagtccttgagtaaaatccttcggtattgattgcgattttacgagtcctgatt-ttgttattccctttcgacttgaagtaaagtc 17103532  T
Q  107 ccgattttgacaaccttg 124  Q
    ||||||||||||||||||    
T  17103533 ccgattttgacaaccttg 17103550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 3573714 - 3573674
Alignment:
Q  83 cccttttcgacctgaagtaaaatcccgattttgacaacctt 123  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  3573714 cccttttcgacctgaagtaaagtcccgattttgacaacctt 3573674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 27890625 - 27890741
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaat-cttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| |||||||||||||||||| |||||||| |||| |||||||||  |||||||||| || | ||| || |||  || |||| || ||||||||| ||    
T  27890625 atatcgattctacaaaagtccttgagtaaaatccttcaattttgattacgattttacgagttccaatt-ttactactccctttcaacttgaagtaaagtc 27890723  T
Q  107 ccgattttgacaaccttg 124  Q
     ||| |||||||||||||    
T  27890724 tcgaatttgacaaccttg 27890741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 31108404 - 31108504
Alignment:
Q  18 tacaaaagtccttaagtaaaatcttc-gattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatcccgattttga 116  Q
    ||||||||||||| |||||||||||  ||||||||||  | |||||||| |  ||||| ||||||  || ||||||||||||||||| ||| ||||||||    
T  31108404 tacaaaagtcctttagtaaaatcttttgattttgattgcggttttacgaatctcgatt-ttgctattccctttcgacctgaagtaaagtcctgattttga 31108502  T
Q  117 ca 118  Q
    ||    
T  31108503 ca 31108504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 17250375 - 17250417
Alignment:
Q  87 tttcgacctgaagtaaaatcccgattttgacaaccttgtccat 129  Q
    ||||||||||||||||| |||||||||||| ||||||| ||||    
T  17250375 tttcgacctgaagtaaagtcccgattttgataaccttgcccat 17250417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 27614531 - 27614434
Alignment:
Q  23 aagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatcccgattttgacaac 120  Q
    ||||| || ||||||||| ||||||||||||| ||||||||||| |  ||||| || |||  || ||||||||||||||||| |||  |||||||||||    
T  27614531 aagtcattgagtaaaatccttcgattttgattgtgattttacgagtcccgatt-ttactattccctttcgacctgaagtaaattcctaattttgacaac 27614434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 17811587 - 17811702
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaatctt-cgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| |||||||||||||||||| ||||||||||| |||||||||||  |||||||||| |  ||||| ||||||  || ||| ||||||||||||| ||    
T  17811587 atatcgattctacaaaagtccttgagtaaaatctttcgattttgattgcgattttacgaatcccgatt-ttgctattcccttttgacctgaagtaaagtc 17811685  T
Q  107 ccgattttgacaacctt 123  Q
    |||||||||||||||||    
T  17811686 ccgattttgacaacctt 17811702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 8304331 - 8304438
Alignment:
Q  14 attctacaaaagtccttaagtaaaat-cttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatcccgatt 112  Q
    ||||||||||||||||| |||||||| |||||||||||||| ||||||||||| |  ||||| ||||||  |  ||||||| ||||||||| || |||||    
T  8304331 attctacaaaagtccttgagtaaaatccttcgattttgattgtgattttacgagtcgcgatt-ttgctactctctttcgacttgaagtaaagtctcgatt 8304429  T
Q  113 ttgacaacc 121  Q
    |||||||||    
T  8304430 ttgacaacc 8304438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 24989663 - 24989549
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| ||||||||||||||||||| |||||||| |||||||||||||   ||||||||| |  ||||| ||| ||  || ||||||||| ||||||| ||    
T  24989663 atatcgattctacaaaagtcctta-gtaaaatccttcgattttgattgccattttacgagtcccgatt-ttgttattccctttcgacctaaagtaaagtc 24989566  T
Q  107 ccgattttgacaacctt 123  Q
    |||||||||||||||||    
T  24989565 ccgattttgacaacctt 24989549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 126
Target Start/End: Complemental strand, 10285714 - 10285675
Alignment:
Q  87 tttcgacctgaagtaaaatcccgattttgacaaccttgtc 126  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  10285714 tttcgacctgaagtaaaatcccgattttgacaaccttgtc 10285675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 44944735 - 44944620
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaa-tcttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| |||||||||||||||||||||||||| | ||||||||| |||  |||||||||| |  ||  | ||||||   | |||||| |||||||||| ||    
T  44944735 atatcgattctacaaaagtccttaagtaaaattgttcgattttaattgcgattttacgagtcccgcat-ttgctatttcctttcgatctgaagtaaagtc 44944637  T
Q  107 ccgattttgacaacctt 123  Q
    |||||||||||||||||    
T  44944636 ccgattttgacaacctt 44944620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 5058778 - 5058882
Alignment:
Q  19 acaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatcccgattttgac 117  Q
    |||||| ||||| | ||||||| |||||||||||||   ||||||||| || ||||| ||||||  || ||| || |||||||||| |||||||||||||    
T  5058778 acaaaattccttgattaaaatccttcgattttgattgcaattttacgaattccgatt-ttgctattcccttttgatctgaagtaaagtcccgattttgac 5058876  T
Q  118 aacctt 123  Q
    ||||||    
T  5058877 aacctt 5058882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 124
Target Start/End: Complemental strand, 1981182 - 1981099
Alignment:
Q  40 cttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatcccgattttgacaaccttg 124  Q
    ||||||||||||||  |||||||||| || | ||| || |||| || ||||||| ||||||||| |||||||||||| |||||||    
T  1981182 cttcgattttgattacgattttacgagttccaattttt-ctaatccctttcgacttgaagtaaagtcccgattttgataaccttg 1981099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 5715524 - 5715582
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaat-cttcgattttgattttgattttacga 65  Q
    |||| |||||||||||||||||| |||||||| | ||||||||||||  ||||||||||    
T  5715524 atatcgattctacaaaagtccttgagtaaaatccctcgattttgattgcgattttacga 5715582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 440 - 506
Target Start/End: Complemental strand, 18475495 - 18475429
Alignment:
Q  440 actaaaatagaaaaaccatttggaaggttagcatttataggtttaatcttgtaaaatgatgtaaaac 506  Q
    ||||||| |||  ||| ||||||||| ||| |||| ||||||||||| || ||||||||||||||||    
T  18475495 actaaaacagatgaacaatttggaagattaacattgataggtttaattttataaaatgatgtaaaac 18475429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 14055503 - 14055610
Alignment:
Q  15 ttctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatcccgattt 113  Q
    ||||||||||||  || ||||||||| |||||||||| ||  |||||||| |||  ||||| ||||| | |  ||||||||||||| ||||| |||||||    
T  14055503 ttctacaaaagtagttgagtaaaatccttcgattttggttgcgattttaccattgtcgatt-ttgctcatctctttcgacctgaagcaaaat-ccgattt 14055600  T
Q  114 tgacaacctt 123  Q
    ||||||||||    
T  14055601 tgacaacctt 14055610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 14365531 - 14365638
Alignment:
Q  15 ttctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatcccgattt 113  Q
    ||||||||||||  || ||||||||| |||||||||| ||  |||||||| |||  ||||| ||||| | |  ||||||||||||| ||||| |||||||    
T  14365531 ttctacaaaagtagttgagtaaaatccttcgattttggttgcgattttaccattgtcgatt-ttgctcatctctttcgacctgaagcaaaat-ccgattt 14365628  T
Q  114 tgacaacctt 123  Q
    ||||||||||    
T  14365629 tgacaacctt 14365638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 23618314 - 23618273
Alignment:
Q  13 gattctacaaaagtccttaagtaaaa-tcttcgattttgatt 53  Q
    |||||||||||||||||| ||||||| |||||||||||||||    
T  23618314 gattctacaaaagtccttgagtaaaattcttcgattttgatt 23618273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 26565438 - 26565377
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgattt 68  Q
    |||| ||||||||||||||  || ||||||||| |||||||||||||  |||||||||||||    
T  26565438 atattgattctacaaaagtagttgagtaaaatccttcgattttgattacgattttacgattt 26565377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 5e-21; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 14074373 - 14074258
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| |||||||||||||||||| ||||||||| ||||||||||||| |||||||| || || | ||| ||||||  || ||||||||||||||||| ||    
T  14074373 atatcgattctacaaaagtccttgagtaaaatccttcgattttgattgtgattttatgagttccaatt-ttgctattccctttcgacctgaagtaaagtc 14074275  T
Q  107 ccgattttgacaacctt 123  Q
    | |||||||||||||||    
T  14074274 ctgattttgacaacctt 14074258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 25146658 - 25146542
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| |||||||| |||| |||| ||||||||| |||||||||||||  ||||||||||||| ||||| ||||||  || |||| |||||||||||| ||    
T  25146658 atatcgattctacgaaagaccttgagtaaaatccttcgattttgattgcgattttacgatttccgatt-ttgctattccctttcaacctgaagtaaagtc 25146560  T
Q  107 ccgattttgacaaccttg 124  Q
    | ||||||||||||||||    
T  25146559 ctgattttgacaaccttg 25146542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 13100429 - 13100551
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| ||||||||||| |||||| ||||||||| || ||||||||||  |||||||||| || ||||| |||| |  || ||||||| ||||||||| ||    
T  13100429 atatcgattctacaaatgtccttgagtaaaatcctttgattttgattgcgattttacgagttccgatt-ttgccattccctttcgacttgaagtaaagtc 13100527  T
Q  107 ccgattttgacaaccttgtccata 130  Q
    |||||||||||||||||| |||||    
T  13100528 ccgattttgacaaccttgcccata 13100551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 21846164 - 21846050
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaat-cttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| |||||||||||||||||| |||||||| ||||||||||||||  ||||||| || |  ||||| ||||||  || |||||||||| |||||| ||    
T  21846164 atatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttaagagtcccgatt-ttgctattccctttcgacctggagtaaagtc 21846066  T
Q  107 ccgattttgacaacct 122  Q
    | ||||||||||||||    
T  21846065 ctgattttgacaacct 21846050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 121
Target Start/End: Complemental strand, 17197414 - 17197306
Alignment:
Q  13 gattctacaaaagtccttaagtaaaat-cttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatcccgat 111  Q
    |||||||||||||||||| |||||||| ||||||||||  ||  |||||||||| || ||||| ||||||  || ||||||| ||||||||| |||||||    
T  17197414 gattctacaaaagtccttgagtaaaatccttcgattttagttgcgattttacgagttccgatt-ttgctactccctttcgacttgaagtaaagtcccgat 17197316  T
Q  112 tttgacaacc 121  Q
    ||||| ||||    
T  17197315 tttgataacc 17197306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 582 - 638
Target Start/End: Complemental strand, 25122913 - 25122857
Alignment:
Q  582 aacaagaaataaaactatgtatacctgtctgagaagcatcaataggtgaatgaccta 638  Q
    |||||||||||| ||||| ||||||| |||||||||||||| |||||||||||||||    
T  25122913 aacaagaaataacactatatatacctatctgagaagcatcactaggtgaatgaccta 25122857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 430 - 506
Target Start/End: Complemental strand, 25123063 - 25122987
Alignment:
Q  430 agcatggtggactaaaatagaaaaaccatttggaaggttagcatttataggtttaatcttgtaaaatgatgtaaaac 506  Q
    |||||| || ||||||| |||| ||||||||||||| ||| ||| |||| ||||||||||||||||||| |||||||    
T  25123063 agcatgttgaactaaaacagaagaaccatttggaagattaacatgtataagtttaatcttgtaaaatgaagtaaaac 25122987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 22789430 - 22789538
Alignment:
Q  16 tctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatcccgatttt 114  Q
    ||||||||||||| | ||||||||| || |||||||||| |||||||||||||| ||||| || |||| || ||| |||||||||| |||||| ||| ||    
T  22789430 tctacaaaagtccattagtaaaatcctttgattttgattgtgattttacgatttgcgatt-tttctaatcccttttgacctgaagtcaaatcctgatatt 22789528  T
Q  115 gacaaccttg 124  Q
     ||| |||||    
T  22789529 aacatccttg 22789538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 16125345 - 16125232
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaat-cttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| ||||||||||| |||||| |||||||| ||||||||||||||  |||||||||| |  | ||| || |||  || ||||||||||||||||| |     
T  16125345 atatcgattctacaaatgtccttgagtaaaatccttcgattttgattgcgattttacgagtcccaatt-ttactattccctttcgacctgaagtaaagtt 16125247  T
Q  107 ccgattttgacaacc 121  Q
    |||||||| ||||||    
T  16125246 ccgattttaacaacc 16125232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 23528895 - 23528953
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaat-cttcgattttgattttgattttacga 65  Q
    |||| |||||||||||||||||| |||||||| ||||||||||||||  ||||||||||    
T  23528895 atatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttacga 23528953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 9351953 - 9351837
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaatctt-cgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| ||||||||||||||||||   ||||||| | |||||||||||  |||||||||| |  ||||| ||||||  |  ||||||||||||||||| ||    
T  9351953 atatagattctacaaaagtccttggataaaatcctacgattttgattgcgattttacgagtcccgatt-ttgctattcgctttcgacctgaagtaaagtc 9351855  T
Q  107 ccgattttgacaaccttg 124  Q
      ||||||||||||||||    
T  9351854 ttgattttgacaaccttg 9351837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 18304701 - 18304640
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaat-cttcgattttgattttgattttacgattt 68  Q
    |||| |||||||||||||||||| |||||||| |||||||||||| |  |||||||||||||    
T  18304701 atatcgattctacaaaagtcctttagtaaaatccttcgattttgaatgcgattttacgattt 18304640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 9954923 - 9954816
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||||||||||  ||||||||||  |||||||| |||||||||||||  |||||||||| |  ||||| ||||||  || ||||||||| ||||||| |     
T  9954923 atatggattcttgaaaagtcctttggtaaaatccttcgattttgattgcgattttacgagtcccgatt-ttgctattccctttcgaccttaagtaaagtt 9954825  T
Q  107 ccgattttg 115  Q
    |||||||||    
T  9954824 ccgattttg 9954816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 17055804 - 17055694
Alignment:
Q  13 gattctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatcccgat 111  Q
    ||||||||||||||  || ||||||||| |||||||||||||  |||||||||| |  ||||| || | | ||| ||||||||| |||||||  ||||||    
T  17055804 gattctacaaaagtagttgagtaaaatccttcgattttgattgcgattttacgagtcccgatt-ttacaatcccctttcgacct-aagtaaagacccgat 17055707  T
Q  112 tttgacaaccttg 124  Q
    |||||||||||||    
T  17055706 tttgacaaccttg 17055694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 9128728 - 9128619
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaa-cccttttcgacctgaagtaaaat 105  Q
    |||| ||| |||||||| ||||| ||||||||| ||||||||||||  ||||||||||| |  ||||| ||||||  |||||||  || ||| |||||||    
T  9128728 atatcgatcctacaaaaatcctttagtaaaatccttcgattttgatcgtgattttacgagtcccgatt-ttgctattcccttttttacttgaggtaaaat 9128630  T
Q  106 cccgattttga 116  Q
    |||||||||||    
T  9128629 cccgattttga 9128619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 125
Target Start/End: Complemental strand, 9954807 - 9954769
Alignment:
Q  87 tttcgacctgaagtaaaatcccgattttgacaaccttgt 125  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  9954807 tttcgaccttaagtaaagtcccgattttgacaaccttgt 9954769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 18304629 - 18304592
Alignment:
Q  87 tttcgacctgaagtaaaatcccgattttgacaaccttg 124  Q
    |||||||||||||| || ||||||||||||||||||||    
T  18304629 tttcgacctgaagtgaagtcccgattttgacaaccttg 18304592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 30619259 - 30619295
Alignment:
Q  87 tttcgacctgaagtaaaatcccgattttgacaaccttg 124  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  30619259 tttcgacctgaag-aaaatcccgattttgacaaccttg 30619295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 41032584 - 41032547
Alignment:
Q  87 tttcgacctgaagtaaaatcccgattttgacaaccttg 124  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  41032584 tttcaacctgaagtaaaatccctattttgacaaccttg 41032547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 42179953 - 42179845
Alignment:
Q  16 tctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatcccgatttt 114  Q
    ||||||||||||||  | ||||||| |||||||||||||  |||||||||| || |||||| |||||  || |||  ||| |||||||| | | ||||||    
T  42179953 tctacaaaagtcctcgaataaaatccttcgattttgattgcgattttacgagtttcgatta-tgctattcccttttaacccgaagtaaatttctgatttt 42179855  T
Q  115 gacaaccttg 124  Q
    ||||||||||    
T  42179854 gacaaccttg 42179845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 18843954 - 18844068
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaat-cttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    ||||||||||||||||||||||| |||||||| || |||||||||||  |||||||||| |  ||||| ||||||  || ||||||||||||||||| |     
T  18843954 atatggattctacaaaagtccttgagtaaaatactccgattttgattgcgattttacgagtcccgatt-ttgctattccctttcgacctgaagtaaagtt 18844052  T
Q  107 ccgattttgacaacct 122  Q
    ||||||||||||||||    
T  18844053 ccgattttgacaacct 18844068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 15051981 - 15051872
Alignment:
Q  14 attctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatcccgatt 112  Q
    ||||||||||||||||| ||||||||| |||||||||||||  |||||||||| |  ||||| ||||||  |||||||||| ||||||||| ||||||||    
T  15051981 attctacaaaagtccttgagtaaaatccttcgattttgattgcgattttacgagtcccgatt-ttgctactccttttcgacttgaagtaaagtcccgatt 15051883  T
Q  113 ttgacaacctt 123  Q
    |||| ||||||    
T  15051882 ttgataacctt 15051872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 41688556 - 41688441
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaat-cttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| ||||||||||||||||||||||||||| ||||||||||| ||  ||||||| || |  ||||| ||||||  || ||||| ||| ||||||| ||    
T  41688556 atatcgattctacaaaagtccttaagtaaaatccttcgattttggttgcgattttaggagtcccgatt-ttgctattccctttcgtcctaaagtaaagtc 41688458  T
Q  107 ccgattttgacaacctt 123  Q
    |||||||||||||||||    
T  41688457 ccgattttgacaacctt 41688441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 27340071 - 27339962
Alignment:
Q  14 attctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatcccgatt 112  Q
    ||||||||||||||| | ||||||||| |||||||||||||  ||||| ||||||| ||||| ||||||  || |||| || ||||||||| | ||||||    
T  27340071 attctacaaaagtccgtgagtaaaatccttcgattttgattgcgatttcacgattttcgatt-ttgctattccctttcaacttgaagtaaagttccgatt 27339973  T
Q  113 ttgacaacctt 123  Q
    |||||||||||    
T  27339972 ttgacaacctt 27339962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 41427658 - 41427775
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| |||||||||||||||||  ||||||||| |||||||||||||  |||||||||| |  ||||| ||||||  || |||||||  |||||||| ||    
T  41427658 atatcgattctacaaaagtcctcgagtaaaatccttcgattttgattgcgattttacgagtcccgatt-ttgctactccctttcgactcgaagtaaagtc 41427756  T
Q  107 ccgattttgacaaccttgt 125  Q
     ||||||||||||||||||    
T  41427757 tcgattttgacaaccttgt 41427775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 19579187 - 19579299
Alignment:
Q  13 gattctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaac-ccttttcgacctgaagtaaaatcccga 110  Q
    |||||||||||||||||| ||| ||||| |||||||||||||  ||||||| || |  | ||| ||||| || || ||||||||||||||||||||||||    
T  19579187 gattctacaaaagtccttgagtgaaatccttcgattttgattgcgattttatgagtcccaatt-ttgcttactccctttcgacctgaagtaaaatcccga 19579285  T
Q  111 ttttgacaaccttg 124  Q
    ||||||| ||||||    
T  19579286 ttttgactaccttg 19579299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 20321182 - 20321297
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| |||||||||||||||||| ||||||||| ||| |||||||||  ||||||| || |  ||||| || |||  |||||| ||||||||||||| ||    
T  20321182 atatagattctacaaaagtccttcagtaaaatccttcaattttgattgcgattttatgagtcccgatt-ttactattcctttttgacctgaagtaaagtc 20321280  T
Q  107 ccgattttgacaacctt 123  Q
    || ||||||||||||||    
T  20321281 ccaattttgacaacctt 20321297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 19042318 - 19042260
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaa-tcttcgattttgattttgattttacga 65  Q
    |||| |||||||||||||||||||||||||| ||||||||||| ||| |||||||||||    
T  19042318 atatcgattctacaaaagtccttaagtaaaattcttcgattttaattgtgattttacga 19042260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 18051423 - 18051307
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaat-cttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| |||||||||||||||||| | |||||| ||| ||||||||||  |||| ||| | |  ||||| || |||  || ||||||||| ||||||||||    
T  18051423 atatcgattctacaaaagtccttcaataaaattctttgattttgattgcgattctacaagtcccgattttt-ctattccctttcgacctaaagtaaaatc 18051325  T
Q  107 ccgattttgacaaccttg 124  Q
    ||||||||||| ||||||    
T  18051324 ccgattttgactaccttg 18051307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 19377842 - 19377902
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaat-cttcgattttgattttgattttacgatt 67  Q
    |||| |||||||||||||||||| |||||||| |||||||||||||| | | |||||||||    
T  19377842 atatcgattctacaaaagtccttgagtaaaatccttcgattttgattgtaaatttacgatt 19377902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 6852377 - 6852340
Alignment:
Q  87 tttcgacctgaagtaaaatcccgattttgacaaccttg 124  Q
    |||||||||||||| || ||||||||||||||||||||    
T  6852377 tttcgacctgaagtgaagtcccgattttgacaaccttg 6852340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 11879839 - 11879955
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| ||||||| |||||| |||| |||||||| |||||||||||||  |||||||||| || ||||| || |||  || ||| ||||||||||||||||    
T  11879839 atatcgattctataaaagttcttaggtaaaatccttcgattttgattgcgattttacgagttccgatt-ttactattcccttttgacctgaagtaaaatc 11879937  T
Q  107 ccgattttgacaaccttg 124  Q
    ||||||||||||||||||    
T  11879938 ccgattttgacaaccttg 11879955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 11897255 - 11897371
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| ||||||| |||||| |||| |||||||| |||||||||||||  |||||||||| || ||||| || |||  || ||| ||||||||||||||||    
T  11897255 atatcgattctataaaagttcttaggtaaaatccttcgattttgattgcgattttacgagttccgatt-ttactattcccttttgacctgaagtaaaatc 11897353  T
Q  107 ccgattttgacaaccttg 124  Q
    ||||||||||||||||||    
T  11897354 ccgattttgacaaccttg 11897371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 8 - 119
Target Start/End: Original strand, 45403268 - 45403379
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaat-cttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| ||||||||||||||| ||||||||||| ||||||||||||||  |||||||||| |  ||||| ||||||  || ||||||| |||| |||| ||    
T  45403268 atatcgattctacaaaagtctttaagtaaaatccttcgattttgattgcgattttacgagtctcgatt-ttgctattccctttcgacgtgaaataaagtc 45403366  T
Q  107 ccgattttgacaa 119  Q
    |||||||||||||    
T  45403367 ccgattttgacaa 45403379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 2040363 - 2040464
Alignment:
Q  13 gattctacaaaagtccttaagtaaaat-cttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatcccgat 111  Q
    |||||||||||||||| | |||||||| ||||||||||||||  |||||||||| || ||||| ||||||  |  ||||||| ||||||||| |||||||    
T  2040363 gattctacaaaagtccatgagtaaaatccttcgattttgattgcgattttacgagttccgatt-ttgctactctctttcgacttgaagtaaagtcccgat 2040461  T
Q  112 ttt 114  Q
    |||    
T  2040462 ttt 2040464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 5922287 - 5922400
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| |||||||||||||| ||| ||||||||| |||||||||||||  |||| |||   ||  |||| ||||||  || ||||||||||||||||| ||    
T  5922287 atatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattgtacatgttctgatt-ttgctattccctttcgacctgaagtaaagtc 5922385  T
Q  107 ccgattttgacaacc 121  Q
    |||||||||||||||    
T  5922386 ccgattttgacaacc 5922400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 17647236 - 17647351
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| |||||||||||| |  || ||||||||| |||||||||||||  ||||||| ||||  ||||| ||||| | |  ||||||||||||| ||||||    
T  17647236 atatcgattctacaaaactagttgagtaaaatccttcgattttgattgcgattttatgattgtcgatt-ttgctcatctctttcgacctgaagcaaaatc 17647334  T
Q  107 ccgattttgacaacctt 123  Q
    |||||||| ||||||||    
T  17647335 ccgattttaacaacctt 17647351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 7489173 - 7489056
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaat-cttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| |||||||||||||||||| |||||||| || |||||||||||  ||||||||||  | | | | ||||||   | ||||||| ||||||||| ||    
T  7489173 atatcgattctacaaaagtccttgagtaaaatcctccgattttgattgcgattttacga-gtcctaattttgctatttcctttcgacttgaagtaaagtc 7489075  T
Q  107 ccgattttgacaaccttgt 125  Q
    | |||||||||||||||||    
T  7489074 ctgattttgacaaccttgt 7489056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 29384123 - 29384086
Alignment:
Q  87 tttcgacctgaagtaaaatcccgattttgacaaccttg 124  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  29384123 tttcgacctgaagcaaaatcccgattttgacaaccttg 29384086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 31424442 - 31424518
Alignment:
Q  46 ttttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatcccgattttgacaacctt 123  Q
    ||||||||  ||||||||||||  ||||| ||||| | |  |||||||||||||||||||| ||||||||||||||||    
T  31424442 ttttgattgcgattttacgattgtcgatt-ttgctcatctctttcgacctgaagtaaaatctcgattttgacaacctt 31424518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 40541710 - 40541594
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaatctt-cgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| ||||||||| |||||||| | ||||||||| | |||||||||  |||||||||| |  ||||| ||||||   | ||||||| ||||||||| ||    
T  40541710 atatcgattctacagaagtccttgaataaaatctttcaattttgattgcgattttacgagtcccgatt-ttgctacttcctttcgacttgaagtaaagtc 40541612  T
Q  107 ccgattttgacaaccttg 124  Q
    |||||||||| |||||||    
T  40541611 ccgattttgataaccttg 40541594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 15294908 - 15294963
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaat-cttcgattttgattttgatttta 62  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||||||  |||||||    
T  15294908 atatggattctacaaaagttcttgagtaaaatccttcgattttgattgcgatttta 15294963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 15475277 - 15475332
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaat-cttcgattttgattttgatttta 62  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||||||  |||||||    
T  15475277 atatggattctacaaaagttcttgagtaaaatccttcgattttgattgcgatttta 15475332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 27836181 - 27836131
Alignment:
Q  16 tctacaaaagtccttaagtaaaat-cttcgattttgattttgattttacga 65  Q
    ||||||||||||||| |||||||| ||||||||||||||  ||||||||||    
T  27836181 tctacaaaagtccttgagtaaaatccttcgattttgattgcgattttacga 27836131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 9770351 - 9770467
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| ||||||||||||| |||| ||||||||| |||||||||||||  |||||||||| |  ||||| ||||||  || ||||||||| ||||||| ||    
T  9770351 atatcgattctacaaaagaccttgagtaaaatccttcgattttgattgcgattttacgagtcccgatt-ttgctattccctttcgacctaaagtaaagtc 9770449  T
Q  107 ccgattttgacaaccttg 124  Q
    ||||||||||||||||||    
T  9770450 ccgattttgacaaccttg 9770467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 6346839 - 6346729
Alignment:
Q  14 attctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatcccgatt 112  Q
    |||||||||||||  || ||||||||| ||||||||||||| |||||||||||||| ||||| |||||   || ||||||||||||| ||| | ||||||    
T  6346839 attctacaaaagtagttgagtaaaatccttcgattttgattgtgattttacgattttcgatt-ttgctcttccctttcgacctgaagcaaatttccgatt 6346741  T
Q  113 ttgacaaccttg 124  Q
    ||||||||||||    
T  6346740 ttgacaaccttg 6346729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 23064851 - 23064737
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| |||||||||||||||||| | ||||||| ||| |||||||||  |||||||||| || ||||| | | ||  || ||||||||||||||||| ||    
T  23064851 atatcgattctacaaaagtccttgaataaaatccttcaattttgattgcgattttacgagttccgatt-tcgttattccctttcgacctgaagtaaagtc 23064753  T
Q  107 ccgattttgacaacct 122  Q
    ||||||||||||||||    
T  23064752 ccgattttgacaacct 23064737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 55476227 - 55476343
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaat-cttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| |||||||||||||||||| |||||||| ||||||||||||||  |||||||||| |  ||||| ||  ||  || ||||||| ||||||||| ||    
T  55476227 atatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttacgagtaccgatt-ttattactccctttcgacttgaagtaaagtc 55476325  T
Q  107 ccgattttgacaaccttg 124  Q
    |||||||||| |||||||    
T  55476326 ccgattttgataaccttg 55476343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 5375904 - 5376020
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| ||||||||| |||||||| ||||||||| |||||||||||||  |||||||||| |  ||||| || |||    |||| ||||||||||||| ||    
T  5375904 atatagattctacagaagtccttgagtaaaatccttcgattttgattgcgattttacgagtcccgatt-ttactatttatttttgacctgaagtaaagtc 5376002  T
Q  107 ccgattttgacaaccttg 124  Q
    || |||||||||||||||    
T  5376003 ccaattttgacaaccttg 5376020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 36121062 - 36121177
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| ||| |||||||||||||| ||||||||| |||||||||||||  |||||||||| |  ||||||  ||||  || |||| || |||||||||  |    
T  36121062 atatcgatactacaaaagtccttgagtaaaatctttcgattttgattccgattttacgagtcccgatta-agctattccctttcaacttgaagtaaagac 36121160  T
Q  107 ccgattttgacaacctt 123  Q
    |||||||||||||||||    
T  36121161 ccgattttgacaacctt 36121177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 125
Target Start/End: Original strand, 7045207 - 7045300
Alignment:
Q  32 agtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatcccgattttgacaaccttgt 125  Q
    ||||||||| |||||||||||||  ||||||| |||||  |||| |||||   || ||||||||||||||||||| || ||||||||||||||||    
T  7045207 agtaaaatccttcgattttgattgcgattttatgatttttgatt-ttgctcttccctttcgacctgaagtaaaattcctattttgacaaccttgt 7045300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 8889534 - 8889571
Alignment:
Q  87 tttcgacctgaagtaaaatcccgattttgacaaccttg 124  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  8889534 tttcgacctgaagcaaaatcccgattttgacaaccttg 8889571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 46664227 - 46664152
Alignment:
Q  44 gattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatcccgattttgacaac 120  Q
    ||||||||||  |||||| |||||| ||||| ||||||   ||||||||||||||| |||||||| |||||||||||    
T  46664227 gattttgattgcgattttccgattttcgatt-ttgctatttcttttcgacctgaagcaaaatcccaattttgacaac 46664152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 24719886 - 24719923
Alignment:
Q  87 tttcgacctgaagtaaaatcccgattttgacaaccttg 124  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  24719886 tttcgacctgaagcaaaatctcgattttgacaaccttg 24719923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 20063962 - 20064078
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaat-cttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| |||||||||||||||||| |||||||| ||||||||||||||  |||||||||| |  ||||| ||||||  || |||| ||||||||||||  |    
T  20063962 atatcgattctacaaaagtccttgagtaaaattcttcgattttgattgcgattttacgagtctcgatt-ttgctattccctttcaacctgaagtaaagcc 20064060  T
Q  107 ccgattttgacaaccttg 124  Q
    ||||||||||||||||||    
T  20064061 ccgattttgacaaccttg 20064078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 974577 - 974694
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaat-cttcgattttgattttgattttacga-tttacgattattgctaacccttttcgacctgaagtaaaat 105  Q
    |||| |||||||||||||||||| |||||||| ||||||||||||||  |||||||||| ||| ||||| ||||||  || ||||||| ||||||||| |    
T  974577 atatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttacgagtttccgatt-ttgctactccctttcgacttgaagtaaagt 974675  T
Q  106 cccgattttgacaaccttg 124  Q
    |||||| |||| |||||||    
T  974676 cccgatattgataaccttg 974694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 19245828 - 19245944
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| ||||||||||||||  |||||||||||| || ||||||||||  |||||||||||||  |||| ||||||  || |||| || ||||| ||||||    
T  19245828 atatcgattctacaaaagtagttaagtaaaatccttagattttgattgcgattttacgatttttgatt-ttgctattccctttcaacttgaagcaaaatc 19245926  T
Q  107 ccgattttgacaaccttg 124  Q
    ||||||||||||||||||    
T  19245927 ccgattttgacaaccttg 19245944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 19262206 - 19262089
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| |||||||||||||||||| ||||||||| |||||||||||||  |||||||||| |  ||||| ||||||  ||  |||||| ||||||||| |     
T  19262206 atatcgattctacaaaagtccttgagtaaaatctttcgattttgattgcgattttacgagtcccgatt-ttgctattcccattcgacttgaagtaaagtt 19262108  T
Q  107 ccgattttgacaaccttgt 125  Q
    ||||||| |||||||||||    
T  19262107 ccgatttcgacaaccttgt 19262089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 27523981 - 27523881
Alignment:
Q  13 gattctacaaaagtccttaagtaaaat-cttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatcccgat 111  Q
    |||||||||||||||||| |||||||| ||||||||||||||  |||||||||| |  ||||| ||||||  || ||||||| ||||||||| |||||||    
T  27523981 gattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttacgagtcccgatt-ttgctactccctttcgacttgaagtaaagtcccgat 27523883  T
Q  112 tt 113  Q
    ||    
T  27523882 tt 27523881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 7302026 - 7302137
Alignment:
Q  13 gattctacaaaagtccttaagtaaaat-cttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatcccgat 111  Q
    |||||||||||||||||| |||||||| ||||||||||||||   ||||||||| |  ||||| |||||| |||  ||| || ||||||||| |||||||    
T  7302026 gattctacaaaagtccttgagtaaaatccttcgattttgattgcaattttacgagtcccgatt-ttgctaccccccttcaacttgaagtaaagtcccgat 7302124  T
Q  112 tttgacaaccttg 124  Q
    ||||| |||||||    
T  7302125 tttgataaccttg 7302137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 20034107 - 20034004
Alignment:
Q  13 gattctacaaaagtccttaagtaaaat-cttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatcccgat 111  Q
    |||||||||||||||||| |||||||| |||| |||||||||  |||||||||| |  ||||| ||||||  || ||||||| ||||||||| |||||||    
T  20034107 gattctacaaaagtccttgagtaaaatccttcaattttgattgcgattttacgagtctcgatt-ttgctactccctttcgacttgaagtaaagtcccgat 20034009  T
Q  112 tttga 116  Q
    |||||    
T  20034008 tttga 20034004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 30433054 - 30433169
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| ||||||| |||||||||| ||||||||| |||||||||||||  ||||||| || |  ||||| || |||   ||||||||||||||||||  ||    
T  30433054 atatcgattctataaaagtccttgagtaaaatcattcgattttgattgcgattttatgagtcccgattttt-ctattgcttttcgacctgaagtaatgtc 30433152  T
Q  107 ccgattttgacaacctt 123  Q
    |||||||||||||||||    
T  30433153 ccgattttgacaacctt 30433169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 1405022 - 1405137
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaat-cttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| |||||||||||||| ||| |||||||| ||||||||||||||  ||||||| || |  ||||| ||||||  || ||| ||||| || |||| ||    
T  1405022 atatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattttatgagtaccgatt-ttgctattcccttttgacctaaattaaagtc 1405120  T
Q  107 ccgattttgacaacctt 123  Q
     ||||||||||||||||    
T  1405121 tcgattttgacaacctt 1405137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 15 - 116
Target Start/End: Original strand, 3041469 - 3041570
Alignment:
Q  15 ttctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatcccgattt 113  Q
    |||||||||||||||| ||||||||| |||||||||||||  |||||||||| |  ||||| ||||||  || ||||||| |||||||||||||||||||    
T  3041469 ttctacaaaagtccttgagtaaaatccttcgattttgattgcgattttacgagtcccgatt-ttgctactccatttcgacttgaagtaaaatcccgattt 3041567  T
Q  114 tga 116  Q
    |||    
T  3041568 tga 3041570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 8592289 - 8592173
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaat-cttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| |||||||||||||||||| |||||||| ||||||||||||||  |||||||||| |  ||||| ||||||   | ||||||| ||||||||| ||    
T  8592289 atatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttacgagtctcgatt-ttgctatttcctttcgacttgaagtaaagtc 8592191  T
Q  107 ccgattttgacaaccttg 124  Q
    ||||||| ||||||||||    
T  8592190 ccgatttcgacaaccttg 8592173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 28746015 - 28746131
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaa-tcttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| |||||||||||||| ||| ||||||| |||||||||||||||  |||||||||| |  ||||| ||||||     ||||||||||||||||| ||    
T  28746015 atatcgattctacaaaagttcttgagtaaaattcttcgattttgattgcgattttacgagtcccgatt-ttgctattttctttcgacctgaagtaaagtc 28746113  T
Q  107 ccgattttgacaaccttg 124  Q
    || |||||||||||||||    
T  28746114 ccaattttgacaaccttg 28746131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 22971054 - 22971164
Alignment:
Q  14 attctacaaaagtccttaagtaaaat-cttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatcccgatt 112  Q
    ||||||||||||||||| |||||||| ||||||||||||||  |||||||||| |  ||||| ||||||  ||||||  || ||||||||| |||| |||    
T  22971054 attctacaaaagtccttgagtaaaatccttcgattttgattgcgattttacgagtcccgatt-ttgctactcctttt-aacttgaagtaaagtcccaatt 22971151  T
Q  113 ttgacaaccttgt 125  Q
    |||| ||||||||    
T  22971152 ttgataaccttgt 22971164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 29067522 - 29067631
Alignment:
Q  14 attctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatcccgatt 112  Q
    ||||||||||| ||||| ||||||||| |||||||| ||||  ||||||| || || ||||| ||||||  ||  |||||||||||||||| | ||||||    
T  29067522 attctacaaaaatccttgagtaaaatccttcgattt-gattgagattttatgagttccgatt-ttgctattcccattcgacctgaagtaaagttccgatt 29067619  T
Q  113 ttgacaaccttg 124  Q
    ||||||||||||    
T  29067620 ttgacaaccttg 29067631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 27090681 - 27090798
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| |||| ||||||| ||||| ||||||||| ||||||||| |||  ||| ||||||||| | ||| || |||  || ||||||||| ||||||||||    
T  27090681 atatcgattatacaaaattccttgagtaaaatccttcgatttttattgcgatcttacgatttgcaattttt-ctattccctttcgacctaaagtaaaatc 27090779  T
Q  107 ccgattttgacaaccttgt 125  Q
     |||||| |||||||||||    
T  27090780 tcgatttcgacaaccttgt 27090798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 8560347 - 8560231
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| ||||||||||||  |||| ||||||||| |||||||||||||  ||||| |||| |  ||||| ||||||  || ||| ||| ||||||||| ||    
T  8560347 atattgattctacaaaaaaccttgagtaaaatccttcgattttgattgcgatttcacgagtctcgatt-ttgctactcccttttgacttgaagtaaagtc 8560249  T
Q  107 ccgattttgacaaccttg 124  Q
    |||||||||| |||||||    
T  8560248 ccgattttgataaccttg 8560231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 20766791 - 20766675
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaatctt-cgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| |||||| |||||| |||| |||||||| || |||||||||||  |||||||||| |  ||||| ||||||  |  ||||||  ||||||||| ||    
T  20766791 atatcgattctccaaaagcccttgagtaaaatttttcgattttgattgcgattttacgagtctcgatt-ttgctactctctttcgagttgaagtaaagtc 20766693  T
Q  107 ccgattttgacaaccttg 124  Q
    ||||||||||||||||||    
T  20766692 ccgattttgacaaccttg 20766675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 41671497 - 41671534
Alignment:
Q  87 tttcgacctgaagtaaaatcccgattttgacaaccttg 124  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  41671497 tttcgacctgaagcaaaatcccgattttgacaaccttg 41671534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 22355951 - 22355841
Alignment:
Q  13 gattctacaaaagtccttaagtaaaatcttc-gattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatcccgat 111  Q
    |||| ||||||||||||| | |||||||||  ||||||||||  |||||||||| |  ||||| ||||||  || ||||||||||| ||||| | |||||    
T  22355951 gattttacaaaagtccttgaataaaatcttttgattttgattgcgattttacgagtcccgatt-ttgctattccatttcgacctgatgtaaagttccgat 22355853  T
Q  112 tttgacaacctt 123  Q
    ||||| ||||||    
T  22355852 tttgagaacctt 22355841  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 24649560 - 24649523
Alignment:
Q  87 tttcgacctgaagtaaaatcccgattttgacaaccttg 124  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  24649560 tttcgacctgaagtaaagtcccaattttgacaaccttg 24649523  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 27676675 - 27676787
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaatctt-cgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| |||| |||||||||  || ||||||||||| |||||||||||  ||||||| ||||| ||||| |||||   || ||||||| ||||| ||||||    
T  27676675 atatcgattttacaaaagtagttgagtaaaatctttcgattttgattgcgattttaagattttcgatt-ttgctcttccctttcgacttgaagcaaaatc 27676773  T
Q  107 ccgattttgacaac 120  Q
    | |||||| |||||    
T  27676774 ctgattttaacaac 27676787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 42697166 - 42697203
Alignment:
Q  88 ttcgacctgaagtaaaatcccgattttgacaaccttgt 125  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  42697166 ttcgacctgaagcaaaatcctgattttgacaaccttgt 42697203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 56315 - 56198
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaat-cttcgattttgattttgattttacgat-ttacgattattgctaacccttttcgacctgaagtaaaat 105  Q
    |||| |||||||||||||||||| |||||||| ||||||||||||||  ||||||| ||| |  ||||| ||||||  || ||||||||||||||||| |    
T  56315 atatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgatttta-gatgtctcgatt-ttgctattccctttcgacctgaagtaaagt 56218  T
Q  106 cccgattttgacaaccttgt 125  Q
    | ||||||||||||||||||    
T  56217 ctcgattttgacaaccttgt 56198  T

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Target: scaffold0186 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 8680 - 8796
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatc 106  Q
    |||| |||||||| ||| | ||| ||||||||| ||| |||||||||  |||||||||| || ||||| ||| ||  || ||||||||||||||||| ||    
T  8680 atatcgattctacgaaaatacttgagtaaaatccttcaattttgattgcgattttacgagttccgatt-ttgttattccctttcgacctgaagtaaagtc 8778  T
Q  107 ccgattttgacaaccttg 124  Q
    |||||||||| |||||||    
T  8779 ccgattttgagaaccttg 8796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 61204 - 61143
Alignment:
Q  8 atatggattctacaaaagtccttaagtaaaat-cttcgattttgattttgattttacgattt 68  Q
    |||| ||||||||||||||  ||||||||||| |||||||||||||| ||||||||||||||    
T  61204 atatcgattctacaaaagtagttaagtaaaattcttcgattttgattgtgattttacgattt 61143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 14811 - 14700
Alignment:
Q  13 gattctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatcccgat 111  Q
    ||||||||||||||| || | ||||||| |||||||||||||  |||||||||| |  ||||| ||||||  || ||||||| |||||||||  ||||||    
T  14811 gattctacaaaagtctttgaataaaatccttcgattttgattgcgattttacgagtcccgatt-ttgctactccatttcgacttgaagtaaagccccgat 14713  T
Q  112 tttgacaaccttg 124  Q
    ||||| |||||||    
T  14712 tttgataaccttg 14700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 116
Target Start/End: Complemental strand, 8843 - 8741
Alignment:
Q  14 attctacaaaagtccttaagtaaaatc-ttcgattttgattttgattttacgatttacgattattgctaacccttttcgacctgaagtaaaatcccgatt 112  Q
    |||||||||||||  || ||||||||| |||||||||||||  ||||||| ||||| ||||| |||||   ||||||| |||| ||| ||||||||||||    
T  8843 attctacaaaagtagttgagtaaaatccttcgattttgattacgattttatgattttcgatt-ttgctctaccttttcaacctaaagcaaaatcccgatt 8745  T
Q  113 ttga 116  Q
    ||||    
T  8744 ttga 8741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 133000 - 132947
Alignment:
Q  13 gattctacaaaagtccttaagtaaaat-cttcgattttgattttgattttacga 65  Q
    |||||||||||||||||| || ||||| ||||||||||||||  ||||||||||    
T  133000 gattctacaaaagtccttgaggaaaatccttcgattttgattgcgattttacga 132947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 38338 - 38301
Alignment:
Q  87 tttcgacctgaagtaaaatcccgattttgacaaccttg 124  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  38338 tttcgacttgaagtaaagtcccgattttgacaaccttg 38301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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