View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5744-Insertion-6 (Length: 584)
Name: NF5744-Insertion-6
Description: NF5744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5744-Insertion-6 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] chr2 (6 HSPs) |
| |
|
| [»] chr4 (6 HSPs) |
| |
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| [»] scaffold0536 (2 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 169 - 584
Target Start/End: Complemental strand, 12540875 - 12540460
Alignment:
| Q |
169 |
tggatgccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtgg |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12540875 |
tggatgccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtgg |
12540776 |
T |
|
| Q |
269 |
ggggatttatgacacattgtgggggaaactcaattgtagaggctgttggtgcgggagttccaatgataacgtggccgtgtcatggagatcacttattcaa |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12540775 |
ggggatttatgacacattgtgggggaaactcaattgtagaggctgttggtgcgggagttccaatgataacgtggccgtgtcatggagatcacttattcaa |
12540676 |
T |
|
| Q |
369 |
cgagaaactaataacacaggtccgaggaattggagtagaagtaggtgcaacagaatggtgtacaaatggtaatggggagagaaagaagttggttggcaga |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12540675 |
cgagaaactaataacacaggtccgaggaattggagtagaagtaggtgcaacagaatggtgtacaaatggtaatggggagagaaagaagttggttggcaga |
12540576 |
T |
|
| Q |
469 |
gatggcatagagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctagacgag |
568 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12540575 |
gatggcatagagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctagacgag |
12540476 |
T |
|
| Q |
569 |
ctgttcaagaaggtgg |
584 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
12540475 |
ctgttcaagaaggtgg |
12540460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 173 - 584
Target Start/End: Complemental strand, 28385520 - 28385109
Alignment:
| Q |
173 |
tgccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtgggggg |
272 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||| || || ||||||||||||||||| ||| |||||||||| |||||||||||||||| |
|
|
| T |
28385520 |
tgccaaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtgggggg |
28385421 |
T |
|
| Q |
273 |
atttatgacacattgtgggggaaactcaattgtagaggctgttggtgcgggagttccaatgataacgtggccgtgtcatggagatcacttattcaacgag |
372 |
Q |
| |
|
|||| |||||||||| || || ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||| ||| ||| |
|
|
| T |
28385420 |
atttctgacacattgcggagggaactcaattgtagaggctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaatgag |
28385321 |
T |
|
| Q |
373 |
aaactaataacacaggtccgaggaattggagtagaagtaggtgcaacagaatggtgtacaaatggtaatggggagagaaagaagttggttggcagagatg |
472 |
Q |
| |
|
||| | |||||| |||||| |||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28385320 |
aaattgataacaacagtccgaagaattggagtggaagtaggtgtaacggaatggtgtacaaatggtaatggggagagaaagaagttggtgagcagagata |
28385221 |
T |
|
| Q |
473 |
gcatagagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctagacgagctgt |
572 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||| |||||| |||||| | ||||||||||||| ||||||||| |
|
|
| T |
28385220 |
acatagagaaggctatgaggaaattgatggacggtggcgatgaagctgaaaatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgt |
28385121 |
T |
|
| Q |
573 |
tcaagaaggtgg |
584 |
Q |
| |
|
| |||||||||| |
|
|
| T |
28385120 |
taaagaaggtgg |
28385109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 12541036 - 12540921
Alignment:
| Q |
8 |
ttaactcagtggtgtacatatgttttggaagcataaatcatttctttgacaaacaactatatgagattgcatgtgcagtagaaggaatgggtcacccatt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12541036 |
ttaactcagtggtgtacatatgttttggaagcataaatcatttctttgacaaacaactatatgagattgcatgtgcagtagaaggaatgggtcacccatt |
12540937 |
T |
|
| Q |
108 |
catatgggttgttcct |
123 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
12540936 |
catatgggttgttcct |
12540921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 28385685 - 28385570
Alignment:
| Q |
8 |
ttaactcagtggtgtacatatgttttggaagcataaatcatttctttgacaaacaactatatgagattgcatgtgcagtagaaggaatgggtcacccatt |
107 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| |||||||||| | ||||||||||| |
|
|
| T |
28385685 |
ttaactcagttgtgtacatatgttttggaagcataaaccatttctctgataaacaactatatgagattgcatgcgcagtagaagcatcaggtcacccatt |
28385586 |
T |
|
| Q |
108 |
catatgggttgttcct |
123 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
28385585 |
catatgggttgttcct |
28385570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 173 - 584
Target Start/End: Original strand, 3417520 - 3417931
Alignment:
| Q |
173 |
tgccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtgggggg |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
3417520 |
tgccgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccaccctgcggtaggggg |
3417619 |
T |
|
| Q |
273 |
atttatgacacattgtgggggaaactcaattgtagaggctgttggtgcgggagttccaatgataacgtggccgtgtcatggagatcacttattcaacgag |
372 |
Q |
| |
|
||||||||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||| || ||||| ||| |
|
|
| T |
3417620 |
atttatgacacattgtggggggaactcatttgttgaggctgttggtgcaggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgag |
3417719 |
T |
|
| Q |
373 |
aaactaataacacaggtccgaggaattggagtagaagtaggtgcaacagaatggtgtacaaatggtaatggggagagaaagaagttggttggcagagatg |
472 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||| || || |||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
3417720 |
aaactaataacacaagtccgaggaattggagtggaagtaggtgcaacagaatggcgtgcacatggtattggggagagaaagaagttggtgagcagagatg |
3417819 |
T |
|
| Q |
473 |
gcatagagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctagacgagctgt |
572 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || || |||| |||||| ||||||||||||||| |||||| ||||||||||||||| ||||||| | |
|
|
| T |
3417820 |
acatagagaaggcaatgaggagattgatggacagtagtgatgaggctgaaggtatgagactacgtgctcgagagcttggagagaaggctaaacgagctat |
3417919 |
T |
|
| Q |
573 |
tcaagaaggtgg |
584 |
Q |
| |
|
|||||||||||| |
|
|
| T |
3417920 |
tcaagaaggtgg |
3417931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 3417355 - 3417468
Alignment:
| Q |
8 |
ttaactcagtggtgtacatatgttttggaagcataaatcatttctttgacaaacaactatatgagattgcatgtgcagtagaaggaatgggtcacccatt |
107 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||| |||||| ||| |||||||||||||||||||||| ||| |||||| | |||||||||||| |
|
|
| T |
3417355 |
ttaactcagtgttgtacatatgttttggaagcttaaactatttctctgataaacaactatatgagattgcatacgcaatagaagcatcgggtcacccatt |
3417454 |
T |
|
| Q |
108 |
catatgggttgttc |
121 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
3417455 |
catatgggttgttc |
3417468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 175 - 584
Target Start/End: Complemental strand, 13448547 - 13448138
Alignment:
| Q |
175 |
ccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggggggat |
274 |
Q |
| |
|
|||||||||||||| |||||||| || || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13448547 |
ccgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcagtggggggat |
13448448 |
T |
|
| Q |
275 |
ttatgacacattgtgggggaaactcaattgtagaggctgttggtgcgggagttccaatgataacgtggccgtgtcatggagatcacttattcaacgagaa |
374 |
Q |
| |
|
||||||| ||||| ||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||| || | ||| ||||| |
|
|
| T |
13448447 |
ttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattctacaatgagaa |
13448348 |
T |
|
| Q |
375 |
actaataacacaggtccgaggaattggagtagaagtaggtgcaacagaatggtgtacaaatggtaatggggagagaaagaagttggttggcagagatggc |
474 |
Q |
| |
|
||| |||||||| |||||||||||||||| ||||| |||||||||||||||||||| | |||| | ||||||||||||||| || |||||||| || |
|
|
| T |
13448347 |
actgataacacaattccgaggaattggagttgaagtcggtgcaacagaatggtgtacgagtggtgtcgcggagagaaagaagttagtgagcagagatagc |
13448248 |
T |
|
| Q |
475 |
atagagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctagacgagctgttc |
574 |
Q |
| |
|
|||||||||||| | |||||||||||||| |||||| |||||||||||||||| || |||||||| |||||| ||||||| || |||| || |||| ||| |
|
|
| T |
13448247 |
atagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacgtgctcgagagtttggagaaaaagctatacaagctattc |
13448148 |
T |
|
| Q |
575 |
aagaaggtgg |
584 |
Q |
| |
|
|||||||||| |
|
|
| T |
13448147 |
aagaaggtgg |
13448138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 173 - 584
Target Start/End: Complemental strand, 13455020 - 13454609
Alignment:
| Q |
173 |
tgccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtgggggg |
272 |
Q |
| |
|
|||||||||||||||| |||| |||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| |
|
|
| T |
13455020 |
tgccgaagggatttgaagagaaaaacatcgagaaaaagggtttgatcattaggggttgggccccacaagttaagatattgagtcaccctgcagtgggggg |
13454921 |
T |
|
| Q |
273 |
atttatgacacattgtgggggaaactcaattgtagaggctgttggtgcgggagttccaatgataacgtggccgtgtcatggagatcacttattcaacgag |
372 |
Q |
| |
|
||||||||| ||||| ||||| |||||||| |||||||||||| | |||||||||||||||||||||||| ||||||||||| || | ||||||| |
|
|
| T |
13454920 |
atttatgacgcattgcggggggaactcaatcgtagaggctgttagcatgggagttccaatgataacgtggccagtccatggagatcaattctacaacgag |
13454821 |
T |
|
| Q |
373 |
aaactaataacacaggtccgaggaattggagtagaagtaggtgcaacagaatggtgtacaaatggtaatggggagagaaagaagttggttggcagagatg |
472 |
Q |
| |
|
|||||||||||||| || |||||||||||| | ||||| |||||||||||||||||||||| |||| || ||||||| |||||||||| ||| |||| |
|
|
| T |
13454820 |
aaactaataacacaagttcgaggaattggaattgaagtcggtgcaacagaatggtgtacaagtggtgttgcggagagagagaagttggtgagcaaagata |
13454721 |
T |
|
| Q |
473 |
gcatagagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctagacgagctgt |
572 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||| |||||||| ||||||| || ||||||| |||||| ||||||| ||||||| || |||| | |
|
|
| T |
13454720 |
gcatagagaaggctgtgaggagattgatgggcggtggtgatgaagctaaaaatatcagggtacgtgctcgagagtttggagaaaaggctacacaagctat |
13454621 |
T |
|
| Q |
573 |
tcaagaaggtgg |
584 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
13454620 |
tcaaaaaggtgg |
13454609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 173 - 584
Target Start/End: Complemental strand, 13440386 - 13439975
Alignment:
| Q |
173 |
tgccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtgggggg |
272 |
Q |
| |
|
|||| |||||||| || |||||||||||| | | | |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13440386 |
tgccaaagggattcgaagagagaaacattaggaggatgggtttgatcattaagggttgggccccacaagttaagatattgagccaccctgcggtgggggg |
13440287 |
T |
|
| Q |
273 |
atttatgacacattgtgggggaaactcaattgtagaggctgttggtgcgggagttccaatgataacgtggccgtgtcatggagatcacttattcaacgag |
372 |
Q |
| |
|
||||||||| ||||| ||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||| || | ||||||| |
|
|
| T |
13440286 |
atttatgacgcattgcggggggaactcaattgtagagtctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattctacaacgag |
13440187 |
T |
|
| Q |
373 |
aaactaataacacaggtccgaggaattggagtagaagtaggtgcaacagaatggtgtacaaatggtaatggggagagaaagaagttggttggcagagatg |
472 |
Q |
| |
|
||||| ||||||| | |||||||||||||| ||||| |||||||| |||||||||| |||||| || ||||||| |||||||||| |||| ||| |
|
|
| T |
13440186 |
aaactggtaacacaatttcgaggaattggagtggaagtcggtgcaacggaatggtgtaagaatggtgttgcggagagagagaagttggtgagcagggata |
13440087 |
T |
|
| Q |
473 |
gcatagagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctagacgagctgt |
572 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||| |||||||| |||||||||| |||| ||| | |||| ||||||| ||||||| || |||| | |
|
|
| T |
13440086 |
acatagagaaggctgtgaggagattgatggagaatggtgatgaagctaaaaatatgaggctacttgctcaagagtttggagaaaaggctacacaagctat |
13439987 |
T |
|
| Q |
573 |
tcaagaaggtgg |
584 |
Q |
| |
|
|||||||||||| |
|
|
| T |
13439986 |
tcaagaaggtgg |
13439975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 13448714 - 13448599
Alignment:
| Q |
8 |
ttaactcagtggtgtacatatgttttggaagcataaatcatttctttgacaaacaactatatgagattgcatgtgcagtagaaggaatgggtcacccatt |
107 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| || |||| | ||| ||||||||||| ||||| |||||||| |||||| | ||||||||||| |
|
|
| T |
13448714 |
ttaactcagtgttgtacatatgttttggaagcatcaactatttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccatt |
13448615 |
T |
|
| Q |
108 |
catatgggttgttcct |
123 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
13448614 |
catatgggttgttcct |
13448599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 13440551 - 13440436
Alignment:
| Q |
8 |
ttaactcagtggtgtacatatgttttggaagcataaatcatttctttgacaaacaactatatgagattgcatgtgcagtagaaggaatgggtcacccatt |
107 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||| || |||||| ||| ||||||||||||||||| || || ||| |||||| | |||||||||| |
|
|
| T |
13440551 |
ttaactcggtgttgtacatatgttttggaagcatcaactatttctctgataaacaactatatgagatggcgtgcgcaatagaagcatctagtcacccatt |
13440452 |
T |
|
| Q |
108 |
catatgggttgttcct |
123 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
13440451 |
catatgggttgttcct |
13440436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 13455185 - 13455071
Alignment:
| Q |
8 |
ttaactcagtggtgtacatatgttttggaagcataaatcatttctttgacaaacaactatatgagattgcatgtgcagtagaaggaatgggtcacccatt |
107 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||| ||| | | | ||||||||||||||||| ||||| || |||||| | ||||| || || |
|
|
| T |
13455185 |
ttaactcagtattgtacatatgttttggaagcatcaattattcatctaataaacaactatatgagatggcatgctcactagaagcagcaggtcaaccgtt |
13455086 |
T |
|
| Q |
108 |
catatgggttgttcc |
122 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
13455085 |
catatgggttgttcc |
13455071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 1e-55; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 178 - 584
Target Start/End: Complemental strand, 48965510 - 48965104
Alignment:
| Q |
178 |
aagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggggggattta |
277 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||||||||| |||||||||||||| || |||||| ||| |||||||||| || ||||| | |||| |
|
|
| T |
48965510 |
aagggattcgaagagagaaacattggaaagaagggtttgattattaggggttgggctccgcaggttctgattctgagccaccccgctgtgggtgccttta |
48965411 |
T |
|
| Q |
278 |
tgacacattgtgggggaaactcaattgtagaggctgttggtgcgggagttccaatgataacgtggccgtgtcatggagatcacttattcaacgagaaact |
377 |
Q |
| |
|
|||| |||||||| | ||||| | || ||||||||||||||||| ||||| ||||| || ||||| | |||||||| || || | |||||| ||||| |
|
|
| T |
48965410 |
tgactcattgtggttggaactccacagtggaggctgttggtgcgggggttccgatgattacatggccttcacatggagaacaattctacaacgaaaaact |
48965311 |
T |
|
| Q |
378 |
aataacacaggtccgaggaattggagtagaagtaggtgcaacagaatggtgtacaaatggtaatggggagagaaagaagttggttggcagagatggcata |
477 |
Q |
| |
|
|||||| | || ||||| |||||||| ||||| |||||||||||||||||| | |||| || || ||| ||||| |||| | || ||| ||||| |
|
|
| T |
48965310 |
gataacagaagtgcgagggattggagtggaagttggtgcaacagaatggtgtttgactggttttgaagaaagagagaagctggtgagtagtgatagcata |
48965211 |
T |
|
| Q |
478 |
gagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctagacgagctgttcaag |
577 |
Q |
| |
|
||||||||| |||||||||||||||| ||||| |||||||||| || || ||| ||||| | |||| ||||||| |||||||||||||| |||||| |
|
|
| T |
48965210 |
gagaaggctgtgaggagattgatggacagtggtgatgaagctgagaaaattagaagtcgtgctcaagagtttggagaaaaggctagacgagccattcaag |
48965111 |
T |
|
| Q |
578 |
aaggtgg |
584 |
Q |
| |
|
||||||| |
|
|
| T |
48965110 |
aaggtgg |
48965104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 173 - 584
Target Start/End: Complemental strand, 48958333 - 48957919
Alignment:
| Q |
173 |
tgccgaagggatttgaggagagaaacattggaaaaaag---ggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggg |
269 |
Q |
| |
|
||||||| ||||| || ||||||||||||||||| ||| ||||||||||||||||| ||||||||||| ||| ||| |||||||| ||| ||||| |
|
|
| T |
48958333 |
tgccgaaaggattcgaagagagaaacattggaaagaagaaaggtttgatcattagggggtgggccccacaagttttgattctgagccacattgccgtggg |
48958234 |
T |
|
| Q |
270 |
gggatttatgacacattgtgggggaaactcaattgtagaggctgttggtgcgggagttccaatgataacgtggccgtgtcatggagatcacttattcaac |
369 |
Q |
| |
|
| ||||||||||||||| ||| | ||||| | ||| ||||||||| | ||||| ||||||||||| ||||||||| |||||||| || || | ||| |
|
|
| T |
48958233 |
tgcatttatgacacattgcgggtggaactccactgtggaggctgttagcgcgggggttccaatgatcacgtggccggtgcatggagaacaattctacaat |
48958134 |
T |
|
| Q |
370 |
gagaaactaataacacaggtccgaggaattggagtagaagtaggtgcaacagaatggtgtacaaatggtaatggggagagaaagaagttggttggcagag |
469 |
Q |
| |
|
||||| | ||||| | || ||||||||||| || || || ||||||||||| |||||| ||| ||| || ||||| | ||||| | || | | || |
|
|
| T |
48958133 |
gagaagttgataactaatgtgcgaggaattggggtggaggttggtgcaacagagtggtgtgtaaacggttttgaggagaaacagaagattgtgagtaaag |
48958034 |
T |
|
| Q |
470 |
atggcatagagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctagacgagc |
569 |
Q |
| |
|
|| | ||||| |||||| ||| |||||||||||| |||||| |||||||||| | || | || ||||| | |||| | ||||| ||||||| |||||| |
|
|
| T |
48958033 |
atagtatagaaaaggctgtgaagagattgatggacggtggtgatgaagctgaggaaatcaaacagcgtgctcaagagttcggagaaaaggctacacgagc |
48957934 |
T |
|
| Q |
570 |
tgttcaagaaggtgg |
584 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
48957933 |
tgttcaagaaggtgg |
48957919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 215 - 562
Target Start/End: Original strand, 48912380 - 48912727
Alignment:
| Q |
215 |
tgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggggggatttatgacacattgtgggggaaactcaattgtagaggctgt |
314 |
Q |
| |
|
|||| |||| ||||||||| |||||||||| ||| |||||||| | || ||||| | ||||||||||||||||||| | || || | ||| ||||| || |
|
|
| T |
48912380 |
tgattattaagggttgggctccacaggttatgattctgagccacacagccgtgggtgcatttatgacacattgtgggtggaattccactgttgaggcagt |
48912479 |
T |
|
| Q |
315 |
tggtgcgggagttccaatgataacgtggccgtgtcatggagatcacttattcaacgagaaactaataacacaggtccgaggaattggagtagaagtaggt |
414 |
Q |
| |
|
| |||| || ||||||||||| ||||||||| |||||||| || || | ||| ||||| | ||||||||||| | || ||||| || || || ||| |
|
|
| T |
48912480 |
tagtgcaggggttccaatgatcacgtggccgatgcatggagaacagttttacaatgagaagttgataacacaggtgcatgggattggggtggaggtcggt |
48912579 |
T |
|
| Q |
415 |
gcaacagaatggtgtacaaatggtaatggggagagaaagaagttggttggcagagatggcatagagaaggctatgaggagattgatggatggtggttatg |
514 |
Q |
| |
|
||||| |||||| | |||| ||||| |||||| ||| ||||| ||||| | || ||| || ||||||| | ||| | |||||||||| ||||| ||| |
|
|
| T |
48912580 |
gcaacggaatggagcacaactggtattggggaaagagagaaggtggtttggagggataatattgagaaggttgtgaagcgattgatggacagtggtgatg |
48912679 |
T |
|
| Q |
515 |
aagctgaaaatatgagactacgtgcacgagagattggagagaaggcta |
562 |
Q |
| |
|
||||||| || || |||| || ||| |||||| |||| ||||| |||| |
|
|
| T |
48912680 |
aagctgagaaaatcagacaacatgctcgagagtttggggagaaagcta |
48912727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 577
Target Start/End: Complemental strand, 48961482 - 48961073
Alignment:
| Q |
173 |
tgccgaagggatttgaggagagaaacattggaaaaaag---ggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggg |
269 |
Q |
| |
|
||||||| |||||||| ||||||||||||| ||| ||| ||||||||||||| ||| ||||||||||| |||| ||| || ||||| | |||||||| |
|
|
| T |
48961482 |
tgccgaaaggatttgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtggg |
48961383 |
T |
|
| Q |
270 |
gggatttatgacacattgtgggggaaa--ctcaattgtagaggctgttggtgcgggagttccaatgataacgtggccgtgtcatggagatcacttattca |
367 |
Q |
| |
|
| |||||||| ||||| ||| | || ||| | | ||||||| | |||| || | ||||||||||| ||||| |||||||| || || | || |
|
|
| T |
48961382 |
tgtgtttatgacgcattgcgggtggaactctccaccattgaggctggtagtgcagggatcccaatgataacatggcccgtacatggagaacaattctaca |
48961283 |
T |
|
| Q |
368 |
acgagaaactaataacacaggtccgaggaattggagtagaagtaggtgcaacagaatggtgtacaaatggtaatggggagagaaagaagttggttggcag |
467 |
Q |
| |
|
||||||| | ||||| | || || || |||||| | ||||| |||||||||||||||||| |||||| || |||||||| ||| || | || |
|
|
| T |
48961282 |
acgagaagttgataactgatgtgcggggtattggaattgaagttggtgcaacagaatggtgtgtggatggtattgaagagagaaataaggtgatcaacaa |
48961183 |
T |
|
| Q |
468 |
agatggcatagagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctagacga |
567 |
Q |
| |
|
|||| ||||||||||| |||| | ||| ||||| |||||| ||||||| ||| |||| |||| ||||| |||||| |||| || ||||||| | || |
|
|
| T |
48961182 |
agataatatagagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatga |
48961083 |
T |
|
| Q |
568 |
gctgttcaag |
577 |
Q |
| |
|
|||||||||| |
|
|
| T |
48961082 |
gctgttcaag |
48961073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 48958497 - 48958424
Alignment:
| Q |
9 |
taactcagtggtgtacatatgttttggaagcataaatcatttctttgacaaacaactatatgagattgcatgtg |
82 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||| | |||| | ||| |||||||| ||||||||||| |||| |
|
|
| T |
48958497 |
taactcagtgttgtacatatgctttggaagcatatgttatttatctgataaacaactttatgagattgcgtgtg |
48958424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 584
Target Start/End: Complemental strand, 48967352 - 48967233
Alignment:
| Q |
465 |
cagagatggcatagagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctaga |
564 |
Q |
| |
|
||||||| ||||||||| ||||| || ||||||||||| || |||||||||| || || |||| |||||| ||||| ||||||| ||||||| | |
|
|
| T |
48967352 |
cagagataacatagagaaagctataagaagattgatggacaatgacgatgaagctgagaagatcagacaacgtgctcgagactttggagaaaaggctaca |
48967253 |
T |
|
| Q |
565 |
cgagctgttcaagaaggtgg |
584 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
48967252 |
cgagcacttcaagaaggtgg |
48967233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 208 - 521
Target Start/End: Original strand, 6539 - 6852
Alignment:
| Q |
208 |
aagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggggggatttatgacacattgtgggggaaactcaattgtag |
307 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| |||| ||| ||||||||| || |||| | |||||||| ||||||||| | || || | ||| | |
|
|
| T |
6539 |
aagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctctgggtgcgtttatgacgcattgtgggtggaattccactgttg |
6638 |
T |
|
| Q |
308 |
aggctgttggtgcgggagttccaatgataacgtggccgtgtcatggagatcacttattcaacgagaaactaataacacaggtccgaggaattggagtaga |
407 |
Q |
| |
|
|||||||| |||| || ||||| ||||| ||||||||| |||||||| || || | ||| || || | ||||||||||| ||| ||||||| || | |
|
|
| T |
6639 |
aggctgttagtgcaggggttccgatgatcacgtggccggtgcatggagaacaattttacaatgaaaagttgataacacaggtgcgacgaattggggtggt |
6738 |
T |
|
| Q |
408 |
agtaggtgcaacagaatggtgtacaaatggtaatggggagagaaagaagttggttggcagagatggcatagagaaggctatgaggagattgatggatggt |
507 |
Q |
| |
|
|| || ||| | || ||| || ||| ||||| |||||||||| ||||| |||| || || ||| | || ||||||||| |||||||||||||||||||| |
|
|
| T |
6739 |
ggtgggggcagctgagtggagttcaactggtattggggagagagagaaggtggtggggagggatagtattgagaaggctgtgaggagattgatggatggt |
6838 |
T |
|
| Q |
508 |
ggttatgaagctga |
521 |
Q |
| |
|
||| | |||||||| |
|
|
| T |
6839 |
ggtgacgaagctga |
6852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 344
Target Start/End: Original strand, 10521 - 10657
Alignment:
| Q |
208 |
aagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggggggatttatgacacattgtgggggaaactcaattgtag |
307 |
Q |
| |
|
||||||||||| |||| |||||||||||| ||||||| ||| | |||||| ||| ||||| | |||||||||||||||||| | || || | || | |
|
|
| T |
10521 |
aagggtttgattattaagggttgggcccctcaggttatgattctaagccacactgttgtgggtgcgtttatgacacattgtgggtggaattccaccgtgg |
10620 |
T |
|
| Q |
308 |
aggctgttggtgcgggagttccaatgataacgtggcc |
344 |
Q |
| |
|
|||| ||| |||| || ||||||||||| |||||||| |
|
|
| T |
10621 |
aggcggttagtgcaggggttccaatgatcacgtggcc |
10657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 173 - 429
Target Start/End: Original strand, 12483454 - 12483716
Alignment:
| Q |
173 |
tgccgaagggatttgaggagagaaacattgga------aaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggt |
266 |
Q |
| |
|
||||||||||||||||||||||||||||| || || | |||||| ||||| ||||| ||||| |||||||| ||| |||||||||||||| || |
|
|
| T |
12483454 |
tgccgaagggatttgaggagagaaacattagaaggaataagatgggtttaatcatcagggggtgggcaccacaggtactgattttgagccaccctgcagt |
12483553 |
T |
|
| Q |
267 |
ggggggatttatgacacattgtgggggaaactcaattgtagaggctgttggtgcgggagttccaatgataacgtggccgtgtcatggagatcacttattc |
366 |
Q |
| |
|
||| | ||||||||| || ||||| | || || |||| || || ||| |||| || |||||||||| ||||||||| ||| || || || || | | |
|
|
| T |
12483554 |
gggtgcatttatgactcactgtggatggaattctgttgtggaagcggttagtgcagggattccaatgatcacgtggccggttcacggtgaacatttttac |
12483653 |
T |
|
| Q |
367 |
aacgagaaactaataacacaggtccgaggaattggagtagaagtaggtgcaacagaatggtgt |
429 |
Q |
| |
|
|| |||||||| ||||| | || ||||| ||||| || ||||| ||||||||||| |||||| |
|
|
| T |
12483654 |
aatgagaaactcataactaatgtgcgagggattggtgtggaagtcggtgcaacagagtggtgt |
12483716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 208 - 290
Target Start/End: Original strand, 12590200 - 12590282
Alignment:
| Q |
208 |
aagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggggggatttatgacacattgtgg |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || | ||| |||||||| ||| ||||| | ||||||||||||||||| |
|
|
| T |
12590200 |
aagggtttgatcattaggggttgggccccacaagtaatgattatgagccacaatgcagtgggcgcgtttatgacacattgtgg |
12590282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 344
Target Start/End: Original strand, 12641512 - 12641645
Alignment:
| Q |
211 |
ggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggggggatttatgacacattgtgggggaaactcaattgtagagg |
310 |
Q |
| |
|
||||| |||||||||| ||||||||||| || | ||| || |||||| |||| ||||| | ||| ||||| ||||| ||| ||||| | ||||||| |
|
|
| T |
12641512 |
ggttttatcattagggagtgggccccacaagtaatgattttaagccacgctgctgtgggtgcattcatgacgcattgcgggtcgaactccttggtagagg |
12641611 |
T |
|
| Q |
311 |
ctgttggtgcgggagttccaatgataacgtggcc |
344 |
Q |
| |
|
||||| |||| || |||||||||| |||||||| |
|
|
| T |
12641612 |
ctgttagtgcagggattccaatgatcacgtggcc |
12641645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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