View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5744_high_12 (Length: 363)

Name: NF5744_high_12
Description: NF5744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5744_high_12
NF5744_high_12
[»] chr5 (4 HSPs)
chr5 (41-183)||(1815906-1816048)
chr5 (273-322)||(1815569-1815618)
chr5 (249-281)||(1815808-1815840)
chr5 (250-318)||(18345685-18345753)
[»] chr7 (3 HSPs)
chr7 (279-318)||(37757528-37757567)
chr7 (279-318)||(37763276-37763315)
chr7 (279-318)||(30969768-30969807)
[»] chr6 (2 HSPs)
chr6 (268-312)||(28754740-28754784)
chr6 (279-317)||(14536134-14536172)
[»] chr3 (3 HSPs)
chr3 (252-316)||(36822592-36822656)
chr3 (268-316)||(43341004-43341052)
chr3 (286-318)||(39736694-39736726)
[»] chr8 (1 HSPs)
chr8 (279-318)||(39421529-39421568)
[»] chr1 (2 HSPs)
chr1 (266-316)||(30773721-30773771)
chr1 (285-318)||(51672481-51672514)


Alignment Details
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 41 - 183
Target Start/End: Complemental strand, 1816048 - 1815906
Alignment:
Q  41 catcgttatatgtgatcgtgacatcacaaattgtacaaaattgaaaatatatgtcacatttatacggtacataaattaagaaatataaattagtttatat 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1816048 catcgttatatgtgatcgtgacatcacaaattgtacaaaattgaaaatatatgtcacatttatacggtacataaattaagaaatataaactagtttatat 1815949  T
Q  141 gagaaatannnnnnnngactgactttacaaaattacctatcct 183  Q
    ||||||||        |||||||||||||||||||||||||||    
T  1815948 gagaaatattttttttgactgactttacaaaattacctatcct 1815906  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 322
Target Start/End: Complemental strand, 1815618 - 1815569
Alignment:
Q  273 aaaatataaagcgagaaaatcaaaggttgttattgtaacaaactcaccta 322  Q
    ||||||||||||||||||||||||| || |||| ||||||||||||||||    
T  1815618 aaaatataaagcgagaaaatcaaagattcttatcgtaacaaactcaccta 1815569  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 281
Target Start/End: Complemental strand, 1815840 - 1815808
Alignment:
Q  249 ggacaaggatcttttataatgagtaaaatataa 281  Q
    |||||||||||||||||||||||||||||||||    
T  1815840 ggacaaggatcttttataatgagtaaaatataa 1815808  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 318
Target Start/End: Original strand, 18345685 - 18345753
Alignment:
Q  250 gacaaggatcttttataatgagtaaaatataaagcgagaaaatcaaaggttgttattgtaacaaactca 318  Q
    |||||||||| | || | |||||||| |||||||   ||||||||| ||||||||||| ||||||||||    
T  18345685 gacaaggatcgtctaaagtgagtaaagtataaagtacgaaaatcaagggttgttattgcaacaaactca 18345753  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 318
Target Start/End: Complemental strand, 37757567 - 37757528
Alignment:
Q  279 taaagcgagaaaatcaaaggttgttattgtaacaaactca 318  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  37757567 taaagcgagaaaatcaaaggttgttattttaacaaactca 37757528  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 318
Target Start/End: Complemental strand, 37763315 - 37763276
Alignment:
Q  279 taaagcgagaaaatcaaaggttgttattgtaacaaactca 318  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  37763315 taaagcgagaaaatcaaaggttgttattttaacaaactca 37763276  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 318
Target Start/End: Original strand, 30969768 - 30969807
Alignment:
Q  279 taaagcgagaaaatcaaaggttgttattgtaacaaactca 318  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  30969768 taaagtgagaaaatcaagggttgttattgtaacaaactca 30969807  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 28754740 - 28754784
Alignment:
Q  268 tgagtaaaatataaagcgagaaaatcaaaggttgttattgtaaca 312  Q
    ||||||||||||||| ||| ||||||||||| |||||||||||||    
T  28754740 tgagtaaaatataaaccgataaaatcaaaggatgttattgtaaca 28754784  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 317
Target Start/End: Original strand, 14536134 - 14536172
Alignment:
Q  279 taaagcgagaaaatcaaaggttgttattgtaacaaactc 317  Q
    ||||| ||||||||||||||||||||||| |||||||||    
T  14536134 taaagtgagaaaatcaaaggttgttattgcaacaaactc 14536172  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 316
Target Start/End: Complemental strand, 36822656 - 36822592
Alignment:
Q  252 caaggatcttttataatgagtaaaatataaagcgagaaaatcaaaggttgttattgtaacaaact 316  Q
    ||||||||||||| ||| |||||||| ||||  || ||||||||  |||||||||||||||||||    
T  36822656 caaggatcttttaaaataagtaaaatgtaaaatgataaaatcaatagttgttattgtaacaaact 36822592  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 316
Target Start/End: Original strand, 43341004 - 43341052
Alignment:
Q  268 tgagtaaaatataaagcgagaaaatcaaaggttgttattgtaacaaact 316  Q
    |||||||| ||||||| |||||||||||||||| ||||| |||||||||    
T  43341004 tgagtaaactataaagtgagaaaatcaaaggttattattataacaaact 43341052  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 318
Target Start/End: Complemental strand, 39736726 - 39736694
Alignment:
Q  286 agaaaatcaaaggttgttattgtaacaaactca 318  Q
    |||||||||||||||||||| ||||||||||||    
T  39736726 agaaaatcaaaggttgttatggtaacaaactca 39736694  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 318
Target Start/End: Original strand, 39421529 - 39421568
Alignment:
Q  279 taaagcgagaaaatcaaaggttgttattgtaacaaactca 318  Q
    ||||| |||||||||||||||||||||| |||||||||||    
T  39421529 taaagtgagaaaatcaaaggttgttattttaacaaactca 39421568  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 30773721 - 30773771
Alignment:
Q  266 aatgagtaaaatataaagcgagaaaatcaaaggttgttattgtaacaaact 316  Q
    |||||||||||||||||| || |||||||||  |||||||| |||||||||    
T  30773721 aatgagtaaaatataaagtgaaaaaatcaaatattgttattttaacaaact 30773771  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 318
Target Start/End: Original strand, 51672481 - 51672514
Alignment:
Q  285 gagaaaatcaaaggttgttattgtaacaaactca 318  Q
    ||||||||||||||||||||||||| ||||||||    
T  51672481 gagaaaatcaaaggttgttattgtatcaaactca 51672514  T

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