View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5744_high_13 (Length: 349)
Name: NF5744_high_13
Description: NF5744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5744_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 347
Target Start/End: Complemental strand, 32177337 - 32177008
Alignment:
| Q |
18 |
tctgatggggttctagttccaggcattccattttcacctttaccatattcatctatcccaccatttcttctccaacctacttctatattgagaaaccttg |
117 |
Q |
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| T |
32177337 |
tctgatggggttctagttccaggcattccattttcacctttaccatattcatctatcccaccatttcttctccaacctacttctatattgagaaaccttg |
32177238 |
T |
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| Q |
118 |
cgatggaagatagtcctaagctcgttaacttacacggtgtttttgccaacacttttgaagcacttgagtctcattcactagaggctcttaatagtggaaa |
217 |
Q |
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| T |
32177237 |
cgatggaagatagtcctaagctcgtttacttacacggtgtttttgccaacacttttgaagcacttgagtctcattcactagaggctcttaatagtggaaa |
32177138 |
T |
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| Q |
218 |
agttgtcaaaaatatgcctcctgtatatgcagttggtccttttgttccttttgaatttgaaaaaggtcaaaaggaagcgtcatcaccacggtcgatcaag |
317 |
Q |
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| T |
32177137 |
agttgtcaaaaatatgcctcctgtttatgcagttggtccttttgttccttttgagtttgaaaaaggtcaaaaggaagcgtcatcaccacggtcgatcaag |
32177038 |
T |
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| Q |
318 |
tggcttgatgatcaacctattggttctgtg |
347 |
Q |
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| T |
32177037 |
tggcttgatgatcaacctattggttctgtg |
32177008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 32 - 347
Target Start/End: Complemental strand, 32184499 - 32184178
Alignment:
| Q |
32 |
agttccaggcattccattttcacctttaccatattcatctatcccaccatttcttctccaacctacttctatattgagaaaccttgcgatggaagatagt |
131 |
Q |
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| T |
32184499 |
agttccaggtattgcattttcacctttaccatattcatctatcccaccgattcttttcaagcctacc---atattcagaaatcttatgatggaagatagt |
32184403 |
T |
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| Q |
132 |
cctaagctcgttaacttacacggtgtttttgccaacacttttgaagcacttgagtctcattcactagaggctcttaatagtggaaaagttgtcaaaaata |
231 |
Q |
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| T |
32184402 |
cctaacctaacaaaactacaaggtgtttttctcaacacctttaaagcacttgaatctcattcactacaagctcttaataatggagaagttgttaaaggaa |
32184303 |
T |
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| Q |
232 |
tgcctcctgtatatgcagttggtccttttgttccttttgaatttgaaaaag---gtcaaaaggaagcgtc------atcaccacggtcgatcaagtggct |
322 |
Q |
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|||||||||| ||||| |||||||||||||||||| |||| ||||| |||| ||||||||||| | || |||||||| | || ||||||||| |
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| T |
32184302 |
tgcctcctgtttatgctgttggtccttttgttcctcttgagtttgagaaagaaagtcaaaaggaaacatcatcagaatcaccaccattgaccaagtggct |
32184203 |
T |
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| Q |
323 |
tgatgatcaacctattggttctgtg |
347 |
Q |
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|||||| ||||||||||| |||||| |
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| T |
32184202 |
tgatgaacaacctattggatctgtg |
32184178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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