View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5744_high_15 (Length: 312)
Name: NF5744_high_15
Description: NF5744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5744_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 13 - 164
Target Start/End: Original strand, 38108571 - 38108722
Alignment:
| Q |
13 |
aatatataaacaaaaacgaaagcagcatgtgggtgttgagattgtattgattgacattatattagactacataaaggttggaaccctcttaaaattaaat |
112 |
Q |
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| T |
38108571 |
aatatataaacaaaaacgaaagcagcatgtgggtgttgagattgtattgattgacattatattagactacataaaggttggaaccctcttaaaattaaat |
38108670 |
T |
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| Q |
113 |
ccattattgttgaaacattctgatgtaatctatctatgatctaataaaagat |
164 |
Q |
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| T |
38108671 |
ccattattgttgaaacattctgatgtaatctatctatgatctaataaaagat |
38108722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 190 - 294
Target Start/End: Original strand, 38108740 - 38108844
Alignment:
| Q |
190 |
gggatccaaagaactccaccattttaaagaagaagagaagcaactcaagctcaaaagcaacttaagctcatcgtagaaggaaactccaaatgaaggaaaa |
289 |
Q |
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| T |
38108740 |
gggatccaaagaactccacctttttaaagaagaagagaagcaactgaagctcaaaagcaacttaagctcatcgtagaaagaaactccaaatgaaggaaaa |
38108839 |
T |
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| Q |
290 |
gcgtg |
294 |
Q |
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| T |
38108840 |
gcgtg |
38108844 |
T |
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